RNA id: LOC118940975


Basic Information

Item Value
RNA id LOC118940975
length 1424
RNA type mRNA
GC content 0.59
exon number 4
gene id LOC118940975
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34235388 ~ 34237566 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAGAGCTTCCTGGGCCTGACCTTGTACTACAGGAGGTTTGTATGGGGCTTCTCAAGCGTCGCTGCTCCCCTGAACCGCCTGATGCTGAAGGACAAGGCCTTGGAGTGTGAGGAGGCCTTCAACACCCTCAAACATGTACTTATCAGGGCCCCCGTGCTTGCCCCTCCTGATCTCACCTTGCCCTTTATCCTGGACACAGACGCAAGCAATGTGGGCATGGGTGGGGTGCTGGCCCAGGTGGGgccagagtgggagagagtggaGCAAAACATTTGACAAACATGAGCGCTGCTACTGTGTCACCCGGCGGGAGCTCCTTGCTGTTGTGGCTTCCATCAAACACATCAAGTACTAACTGGGTGGCCTGCCATTTATAGTAAGAACTGACCACTCTGCTCTTCAGTGGCTCATGTCTTTCAGAGAGCCAGAGGGGCAGGTGGCACGCTGGTTGCAGGAGCTTCAGCCCGTACGACTTCATAGTGGTGCACAGGGCAGGGGCACGCCATTCCAATGCCGACGCCATGTCCCGTACTGTACTGCAGACGGCTGCCGCcactgagcagagagagggacGTGAGAAAGAGCTGTGTGCAGAGGAGGGGGTCTGTGCCACAGTGTGTCGGTTACCAGTGGGGGCTCCcatggagagggtgggaggggatGTAGTTGGGCCGTTCCCCACCACAGACAGTGGAAACCGCTGGGTGCTCACGGCCATGGACTATTTCACAAAATGGCCCGAGGCCTATGCTCTGCATGACCAGGAGGCAGAGACCATCGTCGATGCCCTGACAGCGGGGATGTTCAGCAGGTTTGGCGCTGCGGAGTCCATCCACAGCGACCAAGGCAGAAACATTGAGTCCCGTGTGTTCGCCACCATGTGTGAGAGGCTGGGTATGCACAAGACAAGCACTACTCCTCTCCATCGTCAAAGTGATGGGCTTGTGGAGCGCTTCAACAAAACGCTTGGACAGCAGCTGGCCATTGTCTTTGCCAAACACCAGCGGGACTGGGACAAGCACCTGCTTATGACCTCCTGCACGCCTGCCCTCCTCATCCTGGGGAGAGAGATCCGCACCCCTGCAGAGATGGTGTTTGGTCGGCCCCTGGACAGCCATCATGTTCCCCCGGGGCCGGAGTATTCCCGGAGACTCCAGGACCGCCTGGAGACAGCCCACACCTCCACCAGAGAGCAGCTGGTGAATTCAGGTGTGAGGCAGAAGAGGAACTATGACGTGCATACCAGGGCACCCACCCCCAGGTGCCGCAGACAGGGCTCCAGACAGCCAAGTCTCCCGCCCTGTGTCACCGCACGGTTCCCTGGAGCCACGGACTATATTACCCGTTCCCGCATCCTTGTCCCACATATCCCTGCCTTCCTCCCCTGGGTCCCAGAGAGGCAGCCCCCTGCCACGAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763916 lncRNA downstream 61653 34173511 ~ 34173735 (-) True G1541337
TU1763913 lncRNA downstream 63630 34171442 ~ 34171758 (-) True G1541334
TU1763891 lncRNA downstream 75424 34159717 ~ 34159964 (-) True G1541313
TU1763885 lncRNA downstream 79935 34151912 ~ 34155453 (-) False G1541308
TU1765272 lncRNA upstream 62395 34299961 ~ 34300868 (-) True G1542514
TU1765302 lncRNA upstream 120989 34358555 ~ 34363965 (-) True G1542543
TU1765325 lncRNA upstream 164998 34402564 ~ 34402790 (-) True G1542566
TU1765326 lncRNA upstream 165480 34403046 ~ 34403265 (-) True G1542567
TU1765333 lncRNA upstream 174605 34412171 ~ 34412443 (-) True G1542574
XM_021571709.2 mRNA downstream 51497 34179033 ~ 34183891 (-) False gdf6b
XR_005037435.1 mRNA downstream 51497 34179033 ~ 34183891 (-) True gdf6b
XM_021571703.2 mRNA downstream 367957 33828341 ~ 33867431 (-) False lrp12
XM_021571702.2 mRNA downstream 422087 33783934 ~ 33813301 (-) True vps72a
XM_021571700.2 mRNA downstream 422980 33783934 ~ 33812408 (-) False vps72a
XM_021571737.2 mRNA upstream 357665 34595231 ~ 34610505 (-) False fbxl6
XM_021571738.2 mRNA upstream 357674 34595240 ~ 34610507 (-) False fbxl6
XM_036952539.1 mRNA upstream 357674 34595240 ~ 34610583 (-) False fbxl6
XM_021571736.2 mRNA upstream 357674 34595240 ~ 34619367 (-) True fbxl6
XM_021571742.2 mRNA upstream 407550 34645116 ~ 34704821 (-) False nfatc1
TU1763897 other downstream 72930 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 561157 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 624495 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 624495 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 843636 33391339 ~ 33391752 (-) True G1540473
TU1765523 other upstream 497808 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 900071 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 937740 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 1109329 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 1215052 35452618 ~ 35504157 (-) True G1543128

Expression Profile