RNA id: XM_021571710.2


Basic Information

Item Value
RNA id XM_021571710.2
length 1855
RNA type mRNA
GC content 0.46
exon number 2
gene id trhrb
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34261312 ~ 34265470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGACACAACGGCGTGCTCTCACATTTACGCACGATATGACAAGGAAAACTCAATGCTTATTTTGCAAGTGTGAGAGAAAGTGGAAAAATATGTTTTGGAATTGAAGCACAATACCTTTTAACCTTTTGGCATGGATGTATTTTTCAACTAATAGGTTGACAGGCTTACTTCCCATAGTATTATATACTAGCCTACTACCGTGTAATAACCTACTGATTCGGTTATAGGCCTACGTGTAGTGGGTAGGCTACTTTATAAATTAATTGTTTTCTCTCTACTCGACATATTCAGAGAACTGAAAATGGAAAATGTTACTGAAGCTCAAGAAAATCAGACTTGGGGGACTTGGACGGACCAAATAATCGAATACAAAGTGGTGAGCACTTTGTTAGTTTTCGTGATATGCGCCTTTGGGATCGTTGGTAATGTTATGGTGATCTTAGTGGTGCTTACCACTAAACACATGAGGACACCCACCAACTGCTACCTGGTGAGCTTGGCCGTTGCAGATCTCATCGTACTAACTGCTGCGGGCTTACCGAATATCACGGACAGCATCTTCGGGTCTTGGGTGTTCGGCCGATCAGGATGTCTCGGAATCACCTACCTCCAGTACCTGGGAATCAATGCATCGTCCTGCTCTATCACCGCCTTTACCATCGAAAGGTACATCGCTATTTGCCACCCGATAAAAGCCCAGTTGCTGTGCACACTGTCCAGAGCCAAGAAGATAATATTGTTTGTCTGGGTTTTCACTTTACTTTACTCCGTCATGTGGTTCTACCTGTCAGATATCAAAGAAGAATCATATGAGAACGGCGTGACCATCGTGACATGCAGCTACAAAGTTTCAAGACAACTCTATTTGCCCATTTACTTTTTGGATTTCGGGATATTTTTTGTTGTGCCGCTTATGCTGTCAACCATTCTGTATGGTCTCATCGCCAGAATCCTGATCATGAATCCGTTACCTTCTGAACGCAAGGATAAAAGTAAAAATGAACAAAGCAACACAACGAGGGGATGTAAAAATTCCCACCACACCAGCACTACCGCTACTTCTCGGAGACAGGTGACCAAGATGCTGGCTGTGGTGGTGATCCTGTTCGCTGTGCTGTGGATGCCATACCGCACCCTGGTGGTGGTAAACTCCTTCCTGGAGCAGGCCTACATGAATACCTGGTTTATCCTCTTCTGTCGGAGCTGTGTCTACATCAACAGCGCAATCAACCCCGTCATCTACAATGCTATGTCGCAGAAATTCCGTGCCGCCTTCCGCAAGCTCTGCCTCTGCGGACGGAAAGGCTCTGAGAAGCCTACCGGCGGCACGTACAGCGTGGCGCTAACCTACAGCGTGGTCAAGGACACATCTATGGTGGAGACTACGGACCAATTCAACACAGAGCTGGACGAGATCATGGTAACCTGTGAGTTGCCTGACAAGAAGATGGCGTTTCAGGACACCTGTGTGCACAACAAGGTGACTTTATGCAATGACTGATGTTGTAAGGTTCGAGGTTCAGGGTTCAGTCACTGAAGATGACAGCTCCTCTAAGTCTTGAGGGATGTGCTGAGGCCACAGGAATCTGACTTGCTCTCAACTGTCCATTTTCACTCACACTGAAGTTGACTATCAAGAGACCCAAGCTTGACCTTCGGTGAGTAATTGTAAGGCCCCATGTACAGTACAATGTGAAGGCTATGTGGTGACACATTACTGTGTTGTGTTAGCTCTTCAGACACAAGTCCCAAGAGCAGACACACGTTTCAAGTGTGTGCTCTTGGGACACAGACAATGTGAACTGCCCTGGTGTGACTCAAATCGCACATTTTCCACTCTTAATGAGACCTCAC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004997 thyrotropin-releasing hormone receptor activity molecular_function

KEGG:

id description
K04282 TRHR; thyrotropin-releasing hormone receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763923 lncRNA upstream 82806 34178290 ~ 34178506 (+) True G1541344
TU1763880 lncRNA upstream 109000 34151433 ~ 34152312 (+) True G1541304
TU1763876 lncRNA upstream 113466 34147598 ~ 34147846 (+) True G1541300
TU1763854 lncRNA upstream 126506 34134122 ~ 34134806 (+) True G1541278
TU1763850 lncRNA upstream 130631 34130178 ~ 34130681 (+) True LOC110496058
TU1764072 lncRNA downstream 34147 34299617 ~ 34299968 (+) True LOC110496061
TU1764081 lncRNA downstream 41380 34306850 ~ 34311736 (+) True G1541496
TU1764201 lncRNA downstream 292157 34557627 ~ 34558111 (+) True G1541610
TU1764119 lncRNA downstream 308661 34574131 ~ 34579125 (+) True pleca
TU1764244 lncRNA downstream 361007 34626477 ~ 34626974 (+) True G1541643
XM_036951387.1 mRNA upstream 127578 34127192 ~ 34133734 (+) False LOC110496058
XM_021571707.2 mRNA upstream 145030 34092247 ~ 34116282 (+) True ints8
XM_021571705.2 mRNA upstream 172752 34080108 ~ 34088560 (+) True LOC110496056
XM_036952532.1 mRNA upstream 201352 33938682 ~ 34059960 (+) True LOC110496055
XM_021571683.2 mRNA upstream 723743 33535229 ~ 33537569 (+) False LOC110496043
XM_021571711.2 mRNA downstream 31714 34297184 ~ 34300652 (+) False LOC110496061
XM_021571712.2 mRNA downstream 110626 34376096 ~ 34574937 (+) False pleca
XM_021571713.2 mRNA downstream 110626 34376096 ~ 34574937 (+) False pleca
XM_021571715.2 mRNA downstream 110626 34376096 ~ 34574937 (+) False pleca
XM_021571716.2 mRNA downstream 110626 34376096 ~ 34574937 (+) False pleca
TU1763847 other upstream 131653 34128341 ~ 34129659 (+) False LOC110496058
TU1763554 other upstream 182238 34078718 ~ 34079074 (+) True G1540996
TU1763040 other upstream 723748 33535276 ~ 33537564 (+) True LOC110496043
TU1763041 other upstream 770191 33489337 ~ 33491121 (+) True G1540551
TU1762993 other upstream 802888 33455560 ~ 33458424 (+) False LOC110496797
TU1764399 other downstream 618044 34883514 ~ 34898411 (+) False mbpa
TU1764400 other downstream 618044 34883514 ~ 34898411 (+) True mbpa
TU1764613 other downstream 1017133 35282603 ~ 35283706 (+) True G1541989
TU1764676 other downstream 1109774 35375244 ~ 35386463 (+) False G1542037
TU1764671 other downstream 1109910 35375380 ~ 35380006 (+) False G1542037

Expression Profile