RNA id: XM_021571738.2


Basic Information

Item Value
RNA id XM_021571738.2
length 2641
RNA type mRNA
GC content 0.45
exon number 9
gene id fbxl6
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34595231 ~ 34619367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCATTTATTTGAATATTTCAGTTAGGGAACATCTACTCAGAAGTGCATGTGTGCAATAACTCATTTTGCGCTCCTAAACAACGTCTACAAAATAGTCTACTCTGTTACAAATTCTATTTTTGGAAACCGAAAACCgtatggagatcaaatgtttaatcgatgagaaaatgtgcagaatttgggccaaaatccatctcgcgctatcttctcccactgccggcaaATGGGCTTCCTCCTCATcgccatatttggtagtgagtggaaacgccaactaGATGCTTCACATTAatacatccagtgaaatatctggctcattgttctgtctgtctgtctggtgctttcatgacaactgggaactcagacaAAAACGAGTTCAAATCATTATCTctgtgatcttcaggttggaaacTCTGCGCTcgagaaagaggcccgagtttcCAAGCTGGAATTTCGAGTTGGGTGGCCATTCAAAATTATTttcagtcggagctcgtttttcgGGAGTTCTCAGTTGTTGTGAACGCAGTACCATCCACTCGACTCTCGCTGCGCAACGAACGTAATAAATGTGGGCACCAGGCAGGCGCGTACTGTATTTATAGCTTCTCCTTTATTGTTTACAAGTAGCCTAGCTAGCTACTCCACGACGTGCCTCTTTTGTTGATTAATTTAAGTAAAAATGTATGATGTGGCTCATTTAAAGGAAGATACATGCAGATATTTTTGAAGATAAGTGAAGTTAGGAAACGTCAAGTGTTTGTGTAGATAAGGTGAAGATTGAGGACGAGATGGAAGATGGTACACCTGCAGGACTATCTGTGGGAATTGCTGACGATGCTCCCTCAAGCTCATCAGCAGCATCAACACGAAAGAGGAAGTCTGATGTGCCCAGAGATGCTAAgcccaagaagaaaaagaagGCCAAAGTCAGCCGCCCCCCAAGGCTTGGCTACACTGTTGAACAAGGAGAGGATATGCTTCTGATCATATCGAATACAAATCAGTATGATAACATATGGCGGCCGAACGcgaaaggaagaaagaaaaagaaaatcCTTAAAGGAAAAGCCAAAGTCACTCCAGCAAAGAAGAAGAATACGGTTCTTCCAAAGGGTAAAGCCACAAAGAAGCCACTGATCAAGAAAGGTGAACTGGAGCCCACACTGCAACACCACCAAGAGGAGGGCTTTGACAGCTGGGGTCAGAGCCTACCAGTGGAAGTGTTAGTTAATATTTTCAAGATGGTAGTTCACCAAGATGGTGCAGTACCATTCCTGTGCAGGGTGGCTACGGTGTGCCACCTATGGAATGCAGCTGCAGCCAGTCCTGCTCTGTGGCGCAGTGTGTCTGTGGGTTACTGCTGGTTGGAACCTGGTAAAACCCACTTGCCTAAAACTGTACTGAAGATCAGGAACACTGTAAGCTGGCTTGCACAGAACAGATTCTCCCAATTAAGAGACTTTTCTCTTAATCACTGGAAAAATAATGTTGACCATGTTGTGGAGGTTTTGTCCCAGTCCTGCCCCCATCTCCGCTCACTCAAGCTGTCATACTGTACAGGCGTGACTGAGAAGGCCTTTCAGAGCCTCAGTGGCAGCTGCCGGTCCCTGGATAGCATTAACGTCCAGTACTCTGAGAGAGGATGCTGCCCTGAGTTGCAATTGCTGGAAATTAACACAAAGCTGGACAGTGGATATTGCCAGCTTCCAATTTGCATCCAAGCTTTGCAAAATGGCTGTCCTAAACTGCAGACTTTCCGGATGCTGAATGTCATTCCGATGCCTAAAATGACTCGTAATGGGTCGGGTTCCACATCTGGCTTCCCTTTACTGGAGGAGCTGTGTATGGCCACTACAGCTGTTTCCTTTATGACTGACCAAGACTTGACTAAGATTGTCTACGACTCCCCAAAACTGCGTGTGCTGGACCTGAGAGGTTGTTCCCGGATCACAGCAGCCGGGCTCTCTTCTCTACCATGTGAAGAGCTTGAGTGTCTGTACTGGGGACTGTACTTCAGCAGCAATGTCACAGTATCGTTGTCCAAGAAGGGAATTCACCTGCTGACCCAGAAATGGAGTGGTACCTTGCAGGAGCTAGACCTTGCCAACCAGCTCTTCTCTGAAGAAGACATGGAGATTGCCATGGGCCATCTAGCTCAGAGAACTGGAGAAAACCCCCTACGTTCGCTCAATCTTAGCGGGACCAAGGTCACAACACCTGCCCTCCGGTTAGTTATAGGCCAGTCTACAGCACTCAATTACTTAAACTTGTCTTCCTGCCGTTACCTTCCAAGAGGTCTGAAGAAACTGTATCGTGGCCAAGAAGAAATCCACCAGCTGCTGGACAAATTTGAGTAATCTATTGGTCCAGTTATTTGTTCTAAGAATGCCTGCAAAAGGACATTGTCTTCAAACCAATCATAAAAGTGAATATGAATCCCCCCAATAGCTTAGCTTTAAAACATGGATActattgaatattttttttaaatgttttaccatGACCACTCAATCCACAATTTGTCATTtttgtcatatttttttttatctgtatTTTGGTTTTATTCTTGACTCTCTCAACATGACTGGAATGCTCTAAGCTAATGTGTAAATATGTTGAATAAAATGTGGTTTCAATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765470 lncRNA downstream 3655 34591379 ~ 34591585 (-) True G1542706
TU1765466 lncRNA downstream 5793 34589086 ~ 34589447 (-) True G1542702
TU1765465 lncRNA downstream 6224 34588767 ~ 34589016 (-) True G1542701
TU1765462 lncRNA downstream 9171 34585830 ~ 34586069 (-) True G1542698
TU1765391 lncRNA downstream 16118 34574753 ~ 34579122 (-) True G1542628
TU1765478 lncRNA upstream 14477 34624984 ~ 34625603 (-) True G1542714
TU1765486 lncRNA upstream 22830 34633337 ~ 34634208 (-) True G1542717
TU1765487 lncRNA upstream 23969 34634476 ~ 34634904 (-) True G1542718
TU1765488 lncRNA upstream 25302 34635809 ~ 34636868 (-) True G1542719
TU1765490 lncRNA upstream 31306 34641813 ~ 34642229 (-) True G1542721
LOC118940975 mRNA downstream 357674 34235388 ~ 34237566 (-) True LOC118940975
XM_021571709.2 mRNA downstream 411349 34179033 ~ 34183891 (-) False gdf6b
XR_005037435.1 mRNA downstream 411349 34179033 ~ 34183891 (-) True gdf6b
XM_021571703.2 mRNA downstream 727809 33828341 ~ 33867431 (-) False lrp12
XM_021571702.2 mRNA downstream 781939 33783934 ~ 33813301 (-) True vps72a
XM_021571742.2 mRNA upstream 34609 34645116 ~ 34704821 (-) False nfatc1
XM_021571743.2 mRNA upstream 127320 34737827 ~ 34794929 (-) False atp9b
XM_021571744.2 mRNA upstream 127320 34737827 ~ 34794929 (-) False atp9b
XM_036952540.1 mRNA upstream 184887 34795394 ~ 34808500 (-) True sall3b
XM_021571750.2 mRNA upstream 296616 34907123 ~ 34923956 (-) False zbtb22a
TU1763897 other downstream 432782 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 921009 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 984347 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 984347 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 1203488 33391339 ~ 33391752 (-) True G1540473
TU1765523 other upstream 124867 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 527130 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 564799 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 736388 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 842111 35452618 ~ 35504157 (-) True G1543128

Expression Profile