RNA id: TU1764219


Basic Information

Item Value
RNA id TU1764219
length 1565
lncRNA type sense_over
GC content 0.37
exon number 1
gene id LOC110496067
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34633226 ~ 34640621 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgctctaaccactaggctataccgccctgtattgtaatgtattgtagtatactgtaaaccTATTACAGTTAATTAATATATTGCAGTAGCTTTAAGTGTTTAGAATGTATTTGACAGGTGATAGCAACAAACTTTACATATTCAAGCACAGTCAACTAAAATGTTTAGGCTATACAGAACCATAAAAGGCCACAAAGTTCATTATTCAAAAAGAATAAGAATATTCTAGCTATATTTTAGATCACAATCAAAAGTACCCTAATTACCGCCTTTTCTCTATTCAACTTGTTTTGAACAGGCAAACAGTTTTGCTTGAGTAAATAGGTCAAATATTATATGCAGTACAATGAATTGTACAGGTTATAGCAAGATACtaaacatattcaagtgtagtcAACTAAACTGTTACGGCGCCATAAAATGTCACGAAGTCCATTATTCTAAACGAAAAACCATCtcagttcttgacattttctagTTAACATCAAAAGGCTAGAGTAGACTATTGCCACCTATACTATTAAATGTTTCATTTTGAACAGGCATACCGCATTCCTTGAGTAAACAGGTACCGTATTGGATGTGCTAGGCTGGCAGCAGATAGCATGATCACACGCATAGGAACAACTAAACAGTTTAAAAGGTTTTCTGTATAATTTGACTTTAAGACCAGTAAAATGGTTGTAGGATTGTAACACATGTACAACCATATTAGTTATGCGGACAGTTCTATAGGCACACTTTTTGGTTGGGTGCATCTCATCTTTCCCTGGCCCTGATTTCTTTACAGCAAATATAATACTCATGTTGCACCACCACATCACTATAATAAGGAAATTCACAATCCCACATACAATCCATCCATTCTAATCAATTTCTAAGAAACTCTTTGCCAGAGCAGTATAACTATAACCCACACAGCCACATTGCACACCTCTGTAAACCTGTACATTTTCAGCGATGGGTAGATTGTGGGGCGTGTCAATTCATTGGTCCCCCTATAAGCTAATAGCCAAACATAAATGCCCTAGTTCTAAATGAGTGGAAAAATGAGAGGAAGCCTATGAAAGACTGACAGTATTGCATTGCGAGGAAGATGGAAAGATTTAAATTGAGGATGTCCAATGTTCTCTTTGCTGTAATGGAGATACACAGATGCTTTGTGATTTACTGGAACTCCAACAAGAACGGTGACAATATCAACGGTTGAAAAAAGGGCTCCATAGGCAACCTGGGTGTGGCATTTTCCTGTGCTGATAATTGTCAAATTATTGTCATTTGTCAGATTATCAAATTGCTGGGTTACAAACTCCATGTCTTCAGGTTATGTTAGAAGTCTGAAAGAATAGGTCAGCCATCTGTCACTTTCATTCTGTAGCTTAACAGACTTTCTGTTGAGATGAATAAAATACCCCGATAACATTAAAGGGGCCATCTGCAGTTCAACTCAGAGGTTCAACCCAGCACTGTTTTGGTAAATAGctgagggatggagctggagaaatgtaaccactctcaaatgtaTTGTCAGAGCTACAGGCAAAATGaatcttatattttgggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1764220 lncRNA upstream 4718 34633724 ~ 34634339 (+) False LOC110496067
TU1764244 lncRNA upstream 12083 34626477 ~ 34626974 (+) True G1541643
TU1764119 lncRNA upstream 59932 34574131 ~ 34579125 (+) True pleca
TU1764201 lncRNA upstream 80946 34557627 ~ 34558111 (+) True G1541610
TU1764081 lncRNA upstream 327321 34306850 ~ 34311736 (+) True G1541496
TU1764245 lncRNA downstream 2437 34643058 ~ 34643288 (+) True G1541644
TU1764267 lncRNA downstream 29641 34670262 ~ 34670497 (+) True G1541666
TU1764299 lncRNA downstream 73218 34713839 ~ 34739528 (+) True G1541697
TU1764295 lncRNA downstream 94765 34735386 ~ 34738435 (+) True G1541694
TU1764298 lncRNA downstream 100854 34741475 ~ 34743381 (+) True G1541696
XM_021571741.2 mRNA upstream 6100 34627456 ~ 34632957 (+) True LOC110496068
XM_021571735.2 mRNA upstream 14821 34618554 ~ 34624236 (+) True LOC110496065
XM_021571732.2 mRNA upstream 64120 34496133 ~ 34574937 (+) False pleca
XM_021571745.2 mRNA downstream 242871 34883492 ~ 34898413 (+) False mbpa
XM_021571748.2 mRNA downstream 242871 34883492 ~ 34898413 (+) False mbpa
XM_021571747.2 mRNA downstream 242873 34883494 ~ 34898413 (+) False mbpa
XM_021571749.2 mRNA downstream 242873 34883494 ~ 34898413 (+) False mbpa
XR_002469505.2 mRNA downstream 277916 34918537 ~ 34921751 (+) True LOC110496074
TU1763847 other upstream 509398 34128341 ~ 34129659 (+) False LOC110496058
TU1763554 other upstream 559983 34078718 ~ 34079074 (+) True G1540996
TU1763040 other upstream 1101493 33535276 ~ 33537564 (+) True LOC110496043
TU1763041 other upstream 1147936 33489337 ~ 33491121 (+) True G1540551
TU1762993 other upstream 1180633 33455560 ~ 33458424 (+) False LOC110496797
TU1764399 other downstream 242893 34883514 ~ 34898411 (+) False mbpa
TU1764400 other downstream 242893 34883514 ~ 34898411 (+) True mbpa
TU1764613 other downstream 641982 35282603 ~ 35283706 (+) True G1541989
TU1764676 other downstream 734623 35375244 ~ 35386463 (+) False G1542037
TU1764671 other downstream 734759 35375380 ~ 35380006 (+) False G1542037

Expression Profile