RNA id: XM_021571742.2


Basic Information

Item Value
RNA id XM_021571742.2
length 8400
RNA type mRNA
GC content 0.44
exon number 10
gene id nfatc1
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34645116 ~ 34704821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAATACCAGCTAGGACTCCTTTTCACAAAATCAAGTCCGATATTTCAAATCAGGCACTAAAATAATATCTACTCTCAATCACAAACTGAATCCCGACTCATCGTTTTGATTTCTTTGCGCTATCCAATTGTATCCAAAAGTTTTTCACTCTGCAGATACGATTTGTATTTTTCTTCGAGTCACTTTTTAATtaatctacatgtatttattttttctcattAAGGACATTTTCTATAGTTTCGAGGTTTGTTAGAATATAGCGAGCGAGCATCGCCATCATCATTGGAGGGGTAAAGCGCCGTTTTATGGATATTGGAGTACGCAGACAAAAGTTCGATTTCAGACATTCCGTTACCCTGTCTGACAGAAAAAAATGAAATCTGCTGAAGAGGATGCATACAGCCACACCCCCAACATCAGTCTCTCCCAGGGCAACCCCTGCATGCCTTCCCAATACCCCAGTCTCCAGTCTGGCCCCACCATCTCAGTCTCCATCAGCCAGCCTCCCAGCTACGGCGCCCACAACAACATGAGGACAGTGGGTTACTACTCCTCCCCTAGCATCCGTCCAAATGGGGCGCCAGCCCTCGAGAGCCCTCGTATTGAGATCACAGCCTACGGGCAGTTTCCTGAGGACAAAGTTGAAGAGAGCAACAACCTTACTGTGGCTAAACGGGTCAACTCCATCGTGACCCTGACGTTGCCCAATGCAGATGGCTACCGTGACCCCAGCTGCCTCAGCCCGGCCAGCAGTGTGTCGTCACGCAGCTGTCACTCCGAGGCCTCGTCCTATGAGTCGGGCTTCTCCTACAACTACGAAAACTCACCCCAAAACTCGCCCTGGCAGTCGCCCTGCGTCTCACCCAGTGGCTCCTCCTCTCTCGCCCTTCCGGGTGATGCTTGCGCTAATGCGGGCTCCCCCCGGcactccccctccacctcccccagcACCAGTGTAACGGACGACATCTGGATGGGCCAGCGGGGCTCCAGGCCCAACTCCCCTAGTGGTGGAAAGAGGAAATACAGCTTCAACGGAACCACAACCTCCAAGTCCCCCTACTCCCCTAACCACTCCCCCGGGCCGTCCCCTCACACCTCCCCACGTCTCTGCGTCACAGGTGAGTCCTGGATGCCTAACAACACCAACCAGTACACCAACTCAGCCATAGTTGCAGCCATCAACGCTCTGACCACAGACGGTGTGGCAGACCTGGGGGAGGGCATCCCTCTGAAGGCCCGGAAGACCAGCCTGGAGCCTGGGGCAGTCTGCCTGAAGGTTGAGCCTGGAGGAGAGGAGCTCAGCCCTGGGGAGCTCGGTCAGGATGAGTACCCCTTCTCCCGCATGCCCTTTAAGAAGGAGAACTACTGTGGGGGATTCCTGGATGTGCCACAGCACCCATACTCATGGTCCAAGCCAAAGCAATATGTCAGCCCATCTCTACCAGCCCTTGACTGGCAGCTGCCGTCCAGCTCCGGGCCGTACAGCCTACAGATCGAGGTGCAGCCCAAATCTCACCACCGGGCCCACtatgagaccgaagggagcagaGGGGCAGTCAAGGCTCTGGCAGGAGGACACCCTGTGGTGCAGCTCCAAGGCTACATGGAGAGTGAGCCCCTGACCCTGCAGCTGTTCATTGGTACGGCAGACGACCGTCTCCTGCGGCCCCATGCCTTCTACCAGGTCCACCGCATCACCGGCAAGACCGTCTCCACCCCCAGCCATGAGGTCCTGCAGTCCAACACCAAGGTGCTGGAGATTCCACTGCTGCCCGAGAACAAAATGCGCGCCATAATTGACTGCGCTGGCATCCTGAAACTCCGCAACTCGGATATCGAGCTGAGGAAGGGCGAGACGGACATCGGGCGTAAGAACACACGTGTGAGGATGGTGTTCCGGGTTCACATCAACCAGCCCACAGGAAGGACATTGTCCTTGCAGGCTGCATCCAACCCCATAGAGTGCTCCCAGAGATCAGCCCAGGAGCTGCCCTTGGTGGATAAGCAGACCTTGGAGATGTGCCCTGCTGCTGGGGGAGAGAGGATGCTCCTCAGCGGACACAACTTCCAGCACGACTCCAAGGTGGTGTTCGTGGAGAAAGCCCAAGATGGCCATCACCTATGGGAGACAGAGGCCAAGGTTGACAAGGACTCCTGCAAGTCTACATCTCTTCTCATTGAAATCCCTCCTTATCGGAACCAGAGGATATCCAATCCTGTTCAGGTGAACTTCTATGTGTGCAATGGCAAGAGGAAAAGGAGCCAGTACCAGCACTTCACCTACATGTCTGCCAATGtTCCAATTATAAAAATGGAGCCGAATGATGACTACGACCCCCCTCAGGTGTGTCCCCAGCGTGGCCCTGGCCTGGCGCTTCGCACCAAGCCCTACTACACCCCACAGGTTATGACCTCCATTATACCCACAGAACTCCGGCCATGTGTGGGGGGTACCTACTCCGCCTGCCAACGGAGACTGGGAGGGAAGCCTTCCTCActatcctcctcatcctcccccagCACCAGTCCCAAACTGCATGACCTGTCACCCACAACGCCCTTCTCCAAGTGCCTGTCAGCAGGCCCATCCCAGTCTCCGATCCCAGATGTCTCCATCATCCAGGAGAGTTCTGAATGCTACCAGCCGCAATCTGTCCTCTATCCACCCAGTAGTGCCTCATCCTCACCAGGCTCACAGCCCTCCACCCCTGACACCAGCGGCCCGGAGGCCCCGTTCTCCCCCACCCACTGCCTAACGCCGCCCCAGCCCATCAGTGGCAGCTCCAGCCCAGTGACCCAGTTCTCCAAAGTGCCAGAGAGAGGCAGCCGCTCGTCGAGCCCCACGCTGGCCATTAACATCAAACAGGAGCCAGAGGAACTGGACCAGATGTACCTAGATGATGTTAATGAGATCATCAGGAACGACCTCTCAAGCATCTCTGTCCACAGTCATGCGTAGCACCACTTTAATCATGGACACAGGAGGACTGAAGCAGAAGAAAGGGAAAGACCATACTGTACCAATAATTTTACAACGTCTGCATGCTTGGACTACAGTATGCAGGAagccaaaaaaacaacaaagggGAACAGAGATTGAGCATCTTGAAGATTATAATCTAATGTGTGCCTTTCAGAAGATGCCGTTTCAGAAGATTCACCAATGTATACAAATTGAAGATGAAATGAAATGGCTGATCTCTCAGAAAATAAAAACAGGCGTACTATGCAGCACTGCACCTTCCAGCCTCAACCCCAATAAGTATGCTTTTTAGTGGACCAAGAATTTAGTTTTTCGTTTACTTCTGTCTGCAGATATTGTAAATGATTCAGTGCCTAAGTGTACATTTTGTGTACAATGCTTCAGATTGTTTTGTGTATCTGGCTTTCAATGAAATGATTTCATCCAAAATAAGTGCCTTTGACTGGAAATAGGAAATGATGATAATTAAAGGgcgactgcacttcctgatttagCCTTGTTTTTCATCAATGCTCATAAAGAAATGCTAGCGGAATCACAACAAACAAACTAGCTTTGCTATGGAGAGAACAACGTTTGAAGTTGAGGACTTCTCCCCTCCTGACTGACTGGACCTTCTCAAGATGGTCAGCTAATTCAGTTCTACAGTTTGTGTGAGCTTGTGTTTAGTCAAGCTGACAGCAGCTAGCGTAGCTTGGTGATAGGATAGCCAGCTGCAGCTATCTAGCTAATATTTCTCTGTCAAATCAGTTATGCCAAGATAGCAAGTGCCAGTGTCTGGAATGTGTTTCATAAGGCACTCGTTCTACAACACCTTGCTACGAAAGTAGCTTAGAACTTAGTTTCAGTGTTTCGTCAAGTCATGTAATGCATGTTACCGTGGAAATGGTTTAAACCGAGAGTTGAACACCTGGTCTTAAGTCAGCTCAGCTGTCCACCAACACAATATTCTATAACTGGCTAGTTTTGTCTCATCTCTCTTTGTGTCCACTGTTACATCTTTCCCAGGGGGACAAATCCCAAAACTACTAATATCCCTACAACAGGTGTCACCTAGCCTAAATCTTGACATTGCACAAAGGGATGAGTTTGTGTTACAAAGACAAAGTATTGTATAATGTAGATATCATATTGATGTGCCTACACTTAGCTAGCAAATAAAAACAAGTTGTGTAGAGTACAACTTCAGCTGTCTAATCAGAATGGCATTCTATTTGGCCAAATCTAAGGATTTGGCTGTCTAACCACACACTGACATGCAAAACTCTGGGTGAGGAGGTCCCTTTAATATATGTAATGTATTACAGGTTATAGACAAGTGCAGTTAGGGGGCAGGAGGGGTGGAGTGCATGACACTCCATCCTGGATATGACAGAGTTTGCCCAATTCAAAGCTCCATCCAGGAGCCTACAGAGTAATATGAGAAGAGTGCAATTGTTAaacttatgtagatattctaaacaAAGTGTTTTGATAACTTTCAAGTGTAACAGTTCTATGTATAATAAACCATACTTCACATAATACTGTAGAAGAAGTGTTCtgataatgtgcaaatattgtacctTCCTTTATGGTGTAAGACAAAAGTTCCCTGACATGTTTGAAGAATACACAGGGTCCCTCCCCCCTATTGATAGTACCATTCAATTCAAAAGTAACAAAATATGATACAAAGTAATAGATGTGTATAATTGTATAATTTTAATGCTGAGTGCAACGTCTCTCCCAATTCAGACATCAGTGTCAACTTGTCTTTCAGTCAGAGGACTACATTTCAAAAGCATCTCTTCTGCCGTTATTTCACGGTTGAACATAGCCATAGCCAATCCTGATTCATAGCTAATTCACAAGGGACACGTGCCAGCATGGCACTGACTGGTTGGCATTACTCACTGGGGCCCAGGAGTAGTCCATTGGCACAGTGGAAGGGGCCACCTCCTTACAACATACTATACATGGCACTCATTGTATTATGAATGGTGATTAGGTGAATTTCAGGACAGATAGTAATTTTGACCATTGACCAGACCAAATGTGACCCCCATTACTCTGAAGCAGGACTGGTGCCTCACCACTGCCTCAGCCTTCTGTAACAGCTCCTAATATGGTATGGGGTTACTCACGAAGCTGCTGAACAACAAATCCACCAGGTTTTGTATGTAGCCTGTGAATGGAATAGCGAGAAACATAAGGTTCTCTAGTTTGTAAGTAATTTATATGCTAATAGAGGGACTGTGACTACGGAATAGATTCAGGCCGGTGACGCTGATGCTATGCAACCAGCAGTCTACATTGCTGAATGTTTACTGTTATGTTTTGCTATTTGCTGCCAGAGCCATAGCTATATTTACAGTAGACAAGTGCCATCCTACATTTATTTTTGCCCTAGAGCAGACATGATAAACTTTTATGAGAACAGGCATGTTGTTTTGGGTTATCAGACAAAGCCCCCGAATGCTAGCTAGAGACCTAACTTGCAAATCCGGGTTAGTTATCATATCTTTGTACGAGTTTCAAtgaattggctagctagctaacgtaacaTTAGCTATGCAGTTCGAGTTAAAACATGATTGAAAACAAGCTGGCTACATCCTATGATTGACTAACAAGCTAGTATCCAAGTGCTTGCCCTGTTATTGACCCTAAATGCCAATGGGCTATCTGTTGTTACcaaggtagctagctaatgtGAGCTATGCACATCTTCCTCTGACATGCTGTACATCACATTACACGTTAGAGTAATGTATTTATCTAGTTACAGTATCATTCCCATTTCATCTGTGGTATCACAGCTAGCCTGGCTCGCTAGCATTATCAAATCATGTTTTATAATAGGGTGTCCTGCCCAGGGTGGGTGAAAACATGCTTTGTTGATGAAatttcacttccttatgttataaaatacattttaccaagacaaatatgattaCTTATGTTCTGAATCGTTCCATGGGGTCTTTCTCTAACATGAGTAACCTAATACATCCAATAATAAGCACCGAGCTCTGTTGACATAGCGGTGAAATAAATATTAAAAGCTTTGAAAATAAAATGCTTGGTATATGCTCAGTGACATTTCACAGAGATACGTttgtttttgtgagaaatctttttttttttaaataggaatTTCGAATTAATATGAAAAGCGTatactaaaatatgaaaatactacATGCCATGTCTCAAAATCAATATCCATCTTACCTCTATATTGTTTAATGTCCTGCGGATTCGAGAAAATATATGATTTCAACAGGAAAGTGAGGTAGCCAGTAGCCTTAATTCTTGCACAGAATCCAGCCTAGATGACAATGGAATTTTCCAAACTTTAGACCACTTTTTTtctctggcctccattgatttagACATCCTAATATTGGCCATCCTACAAGGGAAAAAACACCAATAACTTTTGAACGGATTGTGATAGAGACATGCAGTTTGAACCATTGGTTTCATTAAGAGGATTAGCTACACAATTAGCAACACAAATACAACATTAGTCAAAATATGGCATTTTTCACACCCTATGTATAACCAAAAAAAGCTACTAGATAGCTAGTACCACTTATCTATTTAGCTAACATACTCACCAACACTAGTCGTTTGACGGTTGACAGGCAGCAGAATTGACTGTGTCGGGTACAATCTATTCCTGGTAATCTGGCAATATTGTTGAAATGCATTGGGAGTTTGCAGCAACTTTATGGAAGCCTATTTTCACTCCTGTTTGCTGAGCGAAACGTGCGTGTGTTGTATCCATATGCAGACTTGACATCAAATGTCCACATGGTACGACAACGTGTTCTCTCTAGGCAATTGGGCATCATCTACAAAAGTGGCCATGTAAGTAATCCATACCCAACCCCCTAGTAAGTTGTGACGAACGCACTTACAGTACTCtgttttggacgagactgactttataaTAAAAATTATTCTATTTACACTTTGCACTCTATTTTGACACTAGAATGAATTTGACTcatcgatgccacataggccgtTTAAAACCAGTGAAGTTGGTTCCAAGGGGCAGTTGACCTTTAAGCACTTGTTCACACTCACCAATGATAGCATTACCTGCATGTTCAATTTGACTTTTGATCTGTTGTTTAGTACAGCTTTGTATGTTTGTGACTTGAGCCATCTCTTCATGTCACCCAAAGACTGAGAAATGGCATCAACATTGAGTCCTTGAGTACAGTGAGTTAAAAGCACATGCCTTAGAAAAGACAAAGACCTCAATCTGCTCAGGTGTATATTTATTTTAAGGAAATACAACTAGGGCAATGTGTTGGCTATGTTGTCAAGAGGATTTTGAAGATATTCAAGGCTAGTGCCTTTTGGAAGGCCAAAATTTCATCTCAagtctctctgtcctgttgggACAATGCAATGTTTGCATTTCATATGCTTGATTAGCCAATAGTCAGCCTGTGATAATAACTCTGTTGCTTACTGGCCAATGCTTGATTTGCTTCTGCTTCATATGGTTGCCATAGGCTAACTCAAATGAATTTCCTTTACATAGTTATTACATAATTGTGTAGTTCTTGTCTACAAGATACTGAGGGAAAGAATTATGCTTGAAAAAATATGTGAATGGGATAGAGCATATACAGCAGGTTTTCGCCACACTAATCATGCCATCCCTGAAATTCATTTTTTTTGGTTTCGCTTGTACAAACAGTGGAGAAATCTGGTAATACGTACATTAGCAATCATTATTTTATTCATATGAAAGGAAGAAATCATCTCACTTTGGTTAATTTGTCAATTAGAAAATAATTACTGGATACCTATGCAATATGCTGGTATAGCGTTTGTTTCTCAAATAATGTATACATTTAAGACTGTAATAGAAAAAGGTGTCTCTTATGTACATGTATTATTTCCTTTAATCCAAAGAATTGGTAACAATGGTGAAAAGCAATATTCTCATGTAGGAGATCCAAAACTTTTACATTTTTCTATAAGTATGTATTTATTCTTATAGCATGTACTTTGTTTATTCAAGTGTTTCATGTAGCTCCTCATATTACCAAATGGTtaactatataatacactacaatATATAGTATTCTAAGGTTCAGTTTGTAGAATGCACAATAGTTAGACTGAACATACATACATGCTAAATAATCAGATTTTTGCTTCATTGTATCATTAGCTTGCATAAGTTCCCTTATTACAACTGCATTTATTTCTGCTCTTTTATAATAAGTCTTAATCCATGAATTTAAAGGGAAATTAACAAAGCCATGAAGCCATGTTTACTGAAAAGTTGACTATTATATTGTTCAGATATGCAGATTCATTGTTCAAAGTTTTTTTTGTGGGCTCCAATTCTgcttcatgtactgtatgtattgtcaATAATAAATACCTTCTTTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765490 lncRNA downstream 2887 34641813 ~ 34642229 (-) True G1542721
TU1765488 lncRNA downstream 8248 34635809 ~ 34636868 (-) True G1542719
TU1765487 lncRNA downstream 10212 34634476 ~ 34634904 (-) True G1542718
TU1765486 lncRNA downstream 10908 34633337 ~ 34634208 (-) True G1542717
TU1765478 lncRNA downstream 19513 34624984 ~ 34625603 (-) True G1542714
TU1765524 lncRNA upstream 38802 34743623 ~ 34744146 (-) True G1542753
TU1765639 lncRNA upstream 194487 34899308 ~ 34899566 (-) True G1542857
TU1765646 lncRNA upstream 195326 34900147 ~ 34900382 (-) True G1542864
TU1765647 lncRNA upstream 195580 34900401 ~ 34900639 (-) True G1542865
TU1765649 lncRNA upstream 199322 34904143 ~ 34904354 (-) True G1542867
XM_021571736.2 mRNA downstream 25749 34595240 ~ 34619367 (-) True fbxl6
XM_036952539.1 mRNA downstream 34533 34595240 ~ 34610583 (-) False fbxl6
XM_021571738.2 mRNA downstream 34609 34595240 ~ 34610507 (-) False fbxl6
XM_021571737.2 mRNA downstream 34611 34595231 ~ 34610505 (-) False fbxl6
LOC118940975 mRNA downstream 407550 34235388 ~ 34237566 (-) True LOC118940975
XM_021571743.2 mRNA upstream 33006 34737827 ~ 34794929 (-) False atp9b
XM_021571744.2 mRNA upstream 33006 34737827 ~ 34794929 (-) False atp9b
XM_036952540.1 mRNA upstream 90573 34795394 ~ 34808500 (-) True sall3b
XM_021571750.2 mRNA upstream 202302 34907123 ~ 34923956 (-) False zbtb22a
XM_036952542.1 mRNA upstream 229787 34934608 ~ 34943891 (-) False LOC110496076
TU1763897 other downstream 482658 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 970885 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 1034223 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 1034223 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 1253364 33391339 ~ 33391752 (-) True G1540473
TU1765523 other upstream 30553 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 432816 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 470485 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 642074 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 747797 35452618 ~ 35504157 (-) True G1543128

Expression Profile