RNA id: TU1765492


Basic Information

Item Value
RNA id TU1765492
length 5827
lncRNA type sense_over
GC content 0.39
exon number 2
gene id nfatc1
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34645116 ~ 34704821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCACCCACAACGCCCTTCTCCAAGTGCCTGTCAGCAGGCCCATCCCAGTCTCCGATCCCAGATGTCTCCATCATCCAGGAGAGTTCTGAATGCTACCAGCCGCAATCTGTCCTCTATCCACCCAGTAGTGCCTCATCCTCACCAGGCTCACAGCCCTCCACCCCTGACACCAGCGGCCCGGAGGCCCCGTTCTCCCCCACCCACTGCCTAACGCCGCCCCAGCCCATCAGTGGCAGCTCCAGCCCAGTGACCCAGTTCTCCAAAGTGCCAGAGAGAGGCAGCCGCTCGTCGAGCCCCACGCTGGCCATTAACATCAAACAGGAGCCAGAGGAACTGGACCAGATGTACCTAGATGATGTTAATGAGATCATCAGGAACGACCTCTCAAGCATCTCTGTCCACAGTCATGCGTAGCACCACTTTAATCATGGACACAGGAGGACTGAAGCAGAAGAAAGGGAAAGACCATACTGTACCAATAATTTTACAACGTCTGCATGCTTGGACTACAGTATGCAGGAagccaaaaaaacaacaaagggGAACAGAGATTGAGCATCTTGAAGATTATAATCTAATGTGTGCCTTTCAGAAGATGCCGTTTCAGAAGATTCACCAATGTATACAAATTGAAGATGAAATGAAATGGCTGATCTCTCAGAAAATAAAAACAGGCGTACTATGCAGCACTGCACCTTCCAGCCTCAACCCCAATAAGTATGCTTTTTAGTGGACCAAGAATTTAGTTTTTCGTTTACTTCTGTCTGCAGATATTGTAAATGATTCAGTGCCTAAGTGTACATTTTGTGTACAATGCTTCAGATTGTTTTGTGTATCTGGCTTTCAATGAAATGATTTCATCCAAAATAAGTGCCTTTGACTGGAAATAGGAAATGATGATAATTAAAGGgcgactgcacttcctgatttagCCTTGTTTTTCATCAATGCTCATAAAGAAATGCTAGCGGAATCACAACAAACAAACTAGCTTTGCTATGGAGAGAACAACGTTTGAAGTTGAGGACTTCTCCCCTCCTGACTGACTGGACCTTCTCAAGATGGTCAGCTAATTCAGTTCTACAGTTTGTGTGAGCTTGTGTTTAGTCAAGCTGACAGCAGCTAGCGTAGCTTGGTGATAGGATAGCCAGCTGCAGCTATCTAGCTAATATTTCTCTGTCAAATCAGTTATGCCAAGATAGCAAGTGCCAGTGTCTGGAATGTGTTTCATAAGGCACTCGTTCTACAACACCTTGCTACGAAAGTAGCTTAGAACTTAGTTTCAGTGTTTCGTCAAGTCATGTAATGCATGTTACCGTGGAAATGGTTTAAACCGAGAGTTGAACACCTGGTCTTAAGTCAGCTCAGCTGTCCACCAACACAATATTCTATAACTGGCTAGTTTTGTCTCATCTCTCTTTGTGTCCACTGTTACATCTTTCCCAGGGGGACAAATCCCAAAACTACTAATATCCCTACAACAGGTGTCACCTAGCCTAAATCTTGACATTGCACAAAGGGATGAGTTTGTGTTACAAAGACAAAGTATTGTATAATGTAGATATCATATTGATGTGCCTACACTTAGCTAGCAAATAAAAACAAGTTGTGTAGAGTACAACTTCAGCTGTCTAATCAGAATGGCATTCTATTTGGCCAAATCTAAGGATTTGGCTGTCTAACCACACACTGACATGCAAAACTCTGGGTGAGGAGGTCCCTTTAATATATGTAATGTATTACAGGTTATAGACAAGTGCAGTTAGGGGGCAGGAGGGGTGGAGTGCATGACACTCCATCCTGGATATGACAGAGTTTGCCCAATTCAAAGCTCCATCCAGGAGCCTACAGAGTAATATGAGAAGAGTGCAATTGTTAaacttatgtagatattctaaacaAAGTGTTTTGATAACTTTCAAGTGTAACAGTTCTATGTATAATAAACCATACTTCACATAATACTGTAGAAGAAGTGTTCtgataatgtgcaaatattgtacctTCCTTTATGGTGTAAGACAAAAGTTCCCTGACATGTTTGAAGAATACACAGGGTCCCTCCCCCCTATTGATAGTACCATTCAATTCAAAAGTAACAAAATATGATACAAAGTAATAGATGTGTATAATTGTATAATTTTAATGCTGAGTGCAACGTCTCTCCCAATTCAGACATCAGTGTCAACTTGTCTTTCAGTCAGAGGACTACATTTCAAAAGCATCTCTTCTGCCGTTATTTCACGGTTGAACATAGCCATAGCCAATCCTGATTCATAGCTAATTCACAAGGGACACGTGCCAGCATGGCACTGACTGGTTGGCATTACTCACTGGGGCCCAGGAGTAGTCCATTGGCACAGTGGAAGGGGCCACCTCCTTACAACATACTATACATGGCACTCATTGTATTATGAATGGTGATTAGGTGAATTTCAGGACAGATAGTAATTTTGACCATTGACCAGACCAAATGTGACCCCCATTACTCTGAAGCAGGACTGGTGCCTCACCACTGCCTCAGCCTTCTGTAACAGCTCCTAATATGGTATGGGGTTACTCACGAAGCTGCTGAACAACAAATCCACCAGGTTTTGTATGTAGCCTGTGAATGGAATAGCGAGAAACATAAGGTTCTCTAGTTTGTAAGTAATTTATATGCTAATAGAGGGACTGTGACTACGGAATAGATTCAGGCCGGTGACGCTGATGCTATGCAACCAGCAGTCTACATTGCTGAATGTTTACTGTTATGTTTTGCTATTTGCTGCCAGAGCCATAGCTATATTTACAGTAGACAAGTGCCATCCTACATTTATTTTTGCCCTAGAGCAGACATGATAAACTTTTATGAGAACAGGCATGTTGTTTTGGGTTATCAGACAAAGCCCCCGAATGCTAGCTAGAGACCTAACTTGCAAATCCGGGTTAGTTATCATATCTTTGTACGAGTTTCAAtgaattggctagctagctaacgtaacaTTAGCTATGCAGTTCGAGTTAAAACATGATTGAAAACAAGCTGGCTACATCCTATGATTGACTAACAAGCTAGTATCCAAGTGCTTGCCCTGTTATTGACCCTAAATGCCAATGGGCTATCTGTTGTTACcaaggtagctagctaatgtGAGCTATGCACATCTTCCTCTGACATGCTGTACATCACATTACACGTTAGAGTAATGTATTTATCTAGTTACAGTATCATTCCCATTTCATCTGTGGTATCACAGCTAGCCTGGCTCGCTAGCATTATCAAATCATGTTTTATAATAGGGTGTCCTGCCCAGGGTGGGTGAAAACATGCTTTGTTGATGAAatttcacttccttatgttataaaatacattttaccaagacaaatatgattaCTTATGTTCTGAATCGTTCCATGGGGTCTTTCTCTAACATGAGTAACCTAATACATCCAATAATAAGCACCGAGCTCTGTTGACATAGCGGTGAAATAAATATTAAAAGCTTTGAAAATAAAATGCTTGGTATATGCTCAGTGACATTTCACAGAGATACGTttgtttttgtgagaaatctttttttttttaaataggaatTTCGAATTAATATGAAAAGCGTatactaaaatatgaaaatactacATGCCATGTCTCAAAATCAATATCCATCTTACCTCTATATTGTTTAATGTCCTGCGGATTCGAGAAAATATATGATTTCAACAGGAAAGTGAGGTAGCCAGTAGCCTTAATTCTTGCACAGAATCCAGCCTAGATGACAATGGAATTTTCCAAACTTTAGACCACTTTTTTtctctggcctccattgatttagACATCCTAATATTGGCCATCCTACAAGGGAAAAAACACCAATAACTTTTGAACGGATTGTGATAGAGACATGCAGTTTGAACCATTGGTTTCATTAAGAGGATTAGCTACACAATTAGCAACACAAATACAACATTAGTCAAAATATGGCATTTTTCACACCCTATGTATAACCAAAAAAAGCTACTAGATAGCTAGTACCACTTATCTATTTAGCTAACATACTCACCAACACTAGTCGTTTGACGGTTGACAGGCAGCAGAATTGACTGTGTCGGGTACAATCTATTCCTGGTAATCTGGCAATATTGTTGAAATGCATTGGGAGTTTGCAGCAACTTTATGGAAGCCTATTTTCACTCCTGTTTGCTGAGCGAAACGTGCGTGTGTTGTATCCATATGCAGACTTGACATCAAATGTCCACATGGTACGACAACGTGTTCTCTCTAGGCAATTGGGCATCATCTACAAAAGTGGCCATGTAAGTAATCCATACCCAACCCCCTAGTAAGTTGTGACGAACGCACTTACAGTACTCtgttttggacgagactgactttataaTAAAAATTATTCTATTTACACTTTGCACTCTATTTTGACACTAGAATGAATTTGACTcatcgatgccacataggccgtTTAAAACCAGTGAAGTTGGTTCCAAGGGGCAGTTGACCTTTAAGCACTTGTTCACACTCACCAATGATAGCATTACCTGCATGTTCAATTTGACTTTTGATCTGTTGTTTAGTACAGCTTTGTATGTTTGTGACTTGAGCCATCTCTTCATGTCACCCAAAGACTGAGAAATGGCATCAACATTGAGTCCTTGAGTACAGTGAGTTAAAAGCACATGCCTTAGAAAAGACAAAGACCTCAATCTGCTCAGGTGTATATTTATTTTAAGGAAATACAACTAGGGCAATGTGTTGGCTATGTTGTCAAGAGGATTTTGAAGATATTCAAGGCTAGTGCCTTTTGGAAGGCCAAAATTTCATCTCAagtctctctgtcctgttgggACAATGCAATGTTTGCATTTCATATGCTTGATTAGCCAATAGTCAGCCTGTGATAATAACTCTGTTGCTTACTGGCCAATGCTTGATTTGCTTCTGCTTCATATGGTTGCCATAGGCTAACTCAAATGAATTTCCTTTACATAGTTATTACATAATTGTGTAGTTCTTGTCTACAAGATACTGAGGGAAAGAATTATGCTTGAAAAAATATGTGAATGGGATAGAGCATATACAGCAGGTTTTCGCCACACTAATCATGCCATCCCTGAAATTCATTTTTTTTGGTTTCGCTTGTACAAACAGTGGAGAAATCTGGTAATACGTACATTAGCAATCATTATTTTATTCATATGAAAGGAAGAAATCATCTCACTTTGGTTAATTTGTCAATTAGAAAATAATTACTGGATACCTATGCAATATGCTGGTATAGCGTTTGTTTCTCAAATAATGTATACATTTAAGACTGTAATAGAAAAAGGTGTCTCTTATGTACATGTATTATTTCCTTTAATCCAAAGAATTGGTAACAATGGTGAAAAGCAATATTCTCATGTAGGAGATCCAAAACTTTTACATTTTTCTATAAGTATGTATTTATTCTTATAGCATGTACTTTGTTTATTCAAGTGTTTCATGTAGCTCCTCATATTACCAAATGGTtaactatataatacactacaatATATAGTATTCTAAGGTTCAGTTTGTAGAATGCACAATAGTTAGACTGAACATACATACATGCTAAATAATCAGATTTTTGCTTCATTGTATCATTAGCTTGCATAAGTTCCCTTATTACAACTGCATTTATTTCTGCTCTTTTATAATAAGTCTTAATCCATGAATTTAAAGGGAAATTAACAAAGCCATGAAGCCATGTTTACTGAAAAGTTGACTATTATATTGTTCAGATATGCAGATTCATTGTTCAAAGTTTTTTTTGTGGGCTCCAATTCTgcttcatgtactgtatgtattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765490 lncRNA downstream 2912 34641813 ~ 34642229 (-) True G1542721
TU1765488 lncRNA downstream 8273 34635809 ~ 34636868 (-) True G1542719
TU1765487 lncRNA downstream 10237 34634476 ~ 34634904 (-) True G1542718
TU1765486 lncRNA downstream 10933 34633337 ~ 34634208 (-) True G1542717
TU1765478 lncRNA downstream 19538 34624984 ~ 34625603 (-) True G1542714
TU1765499 lncRNA upstream 6084 34665242 ~ 34665496 (-) True G1542729
TU1765501 lncRNA upstream 9608 34668766 ~ 34668987 (-) True G1542731
TU1765524 lncRNA upstream 84465 34743623 ~ 34744146 (-) True G1542753
TU1765639 lncRNA upstream 240150 34899308 ~ 34899566 (-) True G1542857
TU1765646 lncRNA upstream 240989 34900147 ~ 34900382 (-) True G1542864
XM_021571736.2 mRNA downstream 25774 34595240 ~ 34619367 (-) True fbxl6
XM_036952539.1 mRNA downstream 34558 34595240 ~ 34610583 (-) False fbxl6
XM_021571738.2 mRNA downstream 34634 34595240 ~ 34610507 (-) False fbxl6
XM_021571737.2 mRNA downstream 34636 34595231 ~ 34610505 (-) False fbxl6
LOC118940975 mRNA downstream 407575 34235388 ~ 34237566 (-) True LOC118940975
XM_021571743.2 mRNA upstream 78669 34737827 ~ 34794929 (-) False atp9b
XM_021571744.2 mRNA upstream 78669 34737827 ~ 34794929 (-) False atp9b
XM_036952540.1 mRNA upstream 136236 34795394 ~ 34808500 (-) True sall3b
XM_021571750.2 mRNA upstream 247965 34907123 ~ 34923956 (-) False zbtb22a
XM_036952542.1 mRNA upstream 275450 34934608 ~ 34943891 (-) False LOC110496076
TU1763897 other downstream 482683 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 970910 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 1034248 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 1034248 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 1253389 33391339 ~ 33391752 (-) True G1540473
TU1765523 other upstream 76216 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 478479 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 516148 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 687737 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 793460 35452618 ~ 35504157 (-) True G1543128

Expression Profile