RNA id: XM_021571743.2


Basic Information

Item Value
RNA id XM_021571743.2
length 3902
RNA type mRNA
GC content 0.52
exon number 30
gene id atp9b
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34735374 ~ 34794929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCTGACAGCATCCCGCTAAACTCGATGCGGAAGGGCTCGAAAAAAGTAGCTTATTACAACACTCCAAGACATTCTAGGTATTCTTTAGAAGATGAACCCTCTAACTTGGACGAGATGCCCCTGATGATGTCTGAGGAAGGTTTTGAGAATGATGAGAGTGACTACCACACCCTGCCTCGGGCCAGGGCcaaccagagacagagaggcctGGGGTGGCTCCTCATGGGAGGCTGGAAGATCCTCTGTGGCAGCTGCTGTGACTGCTTGGCTCGTATGTGTCGGAGGACGAAGGAGCTGAAAGCCCGGACAGTGTGGCTGGGCCACCCGGAGAAGTGTGAGGAGAAGTACCCCAAGAACGCCATTAAAAACCAGAAGTACAACTTCTTCACCTTTGTGCCTGGGGTTCTCTACCAGCAGTTCAAGTTCTTCCTCAACCTGTACTTTCTAGTGGTGGCCTGCTCCCAGTTCGTGCCATCCCTAAAAATAGGGTACTTGTACACCTACTGGGCACCTCTGggctttgtgatggctgtTACAATGGTACGTGAGGCTGTGGACGAGGTCCGACGGTACCAGCGGGACAAGGAGATGAACTCCCAGCTCTACAGCAAGCTCACAGTGCGAGGTAAAGTTCAATTGAAGAGTTCTGACATACAAGTTGGAGACCTCATCATAGTTGAAAAGAACCAAAGGATCCCTGCAGATATGATATTTCTAAGGACATCAGAGAAGACTGGTTCATGTTTCATCAGGACGGACCAattagatggagagacagactgGAAGTTGAAAGTTGCTGTTGTTTGCACACAAAGACTACCTGCTCTTGGGgACCTCTTTTCCATCAATGCTTATGTCTATGCCCAGAAGCCTCAGCTGGACATCCACAGTTTTGAGGGAAACTTCACAAGGGAAGACGGTGATCCACAAATCCATGAGAGTTTGAGCATTGACCACACCCTTTGGGCCAGCACTATTGTGGCATCTGGCACAGTGATAGGGGTGGTGATCTACACAGGAAAAGAGACCAGGAGTGTACTGAACACGTCCTCGCCCAAGAATAAGGTGGGTCTGCTGGACCTGGAGTTGAACCGCCTTACCAAGGCTCTGTTCCTGGCTCAGGTTGTCCTGTCTATTGTCATGGTAGCGCTGCAGGGCTTTGTGGGCCCCTGGTTTCGCAACCTGTTCCGCTTCATCGTGCTATTCTCCTACATCATCCCCATCAGCTTGCGGGTCAATCTAGACATGGGGAAGTCGGCCTACGGTTGGATGATCATGAAAGATGAAAACATCCCTGGTACTGTGGTACGGACCAGTACCATTCCCGAGGAGCTGGGCCGCCTGGTGTACCTACTGACTGACAAAACAGGCACTCTGACACAGAACGAGATGATCTTCAAGCGGCTGCACCTGGGGACAGTGTCCTATGGGACAGACACCATGGACGAGATCCAGAGCCATATAGGGCAGTCATACGCACAGCCGAACTCCCAGACCCAGCAGTCCAACAGCAGCAACAGCTCCTCCCCATCCAGGAAGCCCCAGCCAGCCCAGGCCCCCAAGGCGGCGGCCCCCAAGGTCCGCAGGAGCGTCAGCAGCCGTATCCACGAGGCAGTGAAGGCCATCGCGCTGTGCCACAACGTCACGCCCGTCTACGAGTCCCGCGCCAACGGGGAGACGGAGTCCACTGCCGCCGAGGCCGACCAGGACTTCAGCGACGACAACCGCACCTATCAGGCCTCCAGCCCTGACGAGGTGGCGCTGGTGCGGTGGACGGAGAGCGTAGGGCTGACTCTGGTGAACAGGGACCTGACCTCCCTGCAGCTGAAGACCCCAGCAGGACAGGTCCTAACCTACTACATCCTGCAGATCTTCCCCTTCACCTCAGAGAGCAAGAGGATGGGCATCATCATCAGGGAGGAGACCACAGGTGACATCACATTTTATATGAAGGGTGCTGATGTTGCCATGGCGAGTATCGTGCAGTACAATGATTGGCTGGAGGAGGAGTGTGGGAACATGGCCAGGGAAGGGCTTCGGACCCTGGTGGTGGCTAAGAAATCTCTGTCTGAAGAGCAGTATACAGACTTTGAGAACCGTTACAACCAGGCCAAGCTGAGTATCCATGACCGGGCTCTGAAGGTGTCAGCAGTGGTAGAGAgtctggagagggagatggagcttCTGTGTTTGACTGGGGTTGAAGACCAACTACAGGCTGACGTCAGGCCAACCCTGGAGCTCCTCAGAAACGCTGGGATCAAGATATGGATGCTTACCGGGGATAAGCTGGAGACAGCTACTTGTATCGCTAAAAGCTCCCATTTGGTGTCCAGAAGCCAAGATATTCATGTATTCAGATCGGTCTCCAACAGAGGAGAGGCCCATCTGGAGCTCAATGCCTTCAGAAGGAAACACGACTGTGCTCTGGTCATCTCTGGAGACTCCTTGGAGgtgtgtcTGCGGTACTATGAGCATGAGTTTGTGGAGCTGGCGTGTCAGTGTCCAGCAGTAGTCTGCTGTCGCTGCTCCCCCACTCAGAAAGCCCAGATTGTCCACCTTCTCAAGCAGCACACAGCCAACAGAACCTGTGCCATAGGTGATGGAGGTAATGATGTCAGTATGATCCAGGCAGCAGACTGTGGCATCGGCATTGAAGGAAAGGAGGGGAAGCAGGCATCCCTGGCGGCAGATTTCTCCATCACACAGTTTAAGCACATTGGCCGGCTGCTCATGGTCCACGGCAGGAACAGCTACAAGCGTTCAGCAGCCCTGGGCCAGTTTGTCATGCACCGAGGCATGATCATATCAACCATGCAGGCAGTGTTTTCCTCCATTTTCTACTTTGCATCAGTCCCTTTATACCAGGGTTTTCTCATGGTTGGGTATTCTACCATCTACACGATGTTCCCTGTATTTTCCCTGGTGCTGGACCAGGACGTGAAGCCAGAGATGGCCCTGCTGTACCCTGAGCTTTACAAAGACCTCACCAAGGGTCGTTCCTTGTCTTTCAAGACTTTTCTCATTTGGGTGTTGATCAGTATTTACCAAGGTGGCATCCTGATGTACGGCGCACTGGTGTTGTTTGAGTCTGAGTTTGTGCACGTGGTGGCCATCTCCTTCACTGCGCTGATCCTCACCGAGCTGCTCATGGTGGCGCTCAACATCCGTACCTGGCACTGGCTCATGGTGCTAGCAGAGTTCCTCAGTCTGGGCTGCTACATAGCCTCGCTTGCCTTCCTCAATGAGTACTTCGGCATAGGCAGAGTGTCCTTTGGAGCATTTCTGGACCTGGGCTTCATCACGACACCAGCCTTCCTTTGGAAGGTGTCAGTGATCACCGTCGtcagctgtctccctctctatatcaTCAAATACCTGAAGCGCAAGTTCTCACCACCCAGCTACTCCAAGCTGTCCTCATGAGCCATTTTAAGCTCTATCCTGCTCACACAACTCCCCTAATTATCTGTCTCATGCTCTCTATGATTCCAACCTTTCTTTTCAGCGCTTTTTGAACTGGTCCACAGTGATTGACAGACAGGGAACCTAAAGAGGTCACTAGAAGCAACAACATGAGTAGAGTATTGTATGGATTCATGTCACTGAAATGTGGTAATACTTGTAAAGACAGCGCCACACAAATGCTAAAAAGGGACAGGGAAGGGGTAAAAACAGAACAAATAACCCTTTGAGGCACTGGACGGGAAGGCTCGGGTCAATTTGCCTTCTGCACATCCAACCCAATTGCTTCAAGtgtctttacattttttataactCGATGACAATGGTTTCCGCGTTGAACTTTTTGTATATGTAGTTCTGCATTAAAAAGTGTTTTATTCAACTTTATTCATCTCTGTGCTGAGTAGAGATGCCAGTATGATGGTTTAATTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765501 lncRNA downstream 68840 34668766 ~ 34668987 (-) True G1542731
TU1765499 lncRNA downstream 72331 34665242 ~ 34665496 (-) True G1542729
TU1765492 lncRNA downstream 78669 34645141 ~ 34659158 (-) True nfatc1
TU1765490 lncRNA downstream 95598 34641813 ~ 34642229 (-) True G1542721
TU1765488 lncRNA downstream 100959 34635809 ~ 34636868 (-) True G1542719
TU1765639 lncRNA upstream 104379 34899308 ~ 34899566 (-) True G1542857
TU1765646 lncRNA upstream 105218 34900147 ~ 34900382 (-) True G1542864
TU1765647 lncRNA upstream 105472 34900401 ~ 34900639 (-) True G1542865
TU1765649 lncRNA upstream 109214 34904143 ~ 34904354 (-) True G1542867
TU1765651 lncRNA upstream 110108 34905037 ~ 34905317 (-) True G1542869
XM_021571742.2 mRNA downstream 33006 34645116 ~ 34704821 (-) False nfatc1
XM_021571736.2 mRNA downstream 118460 34595240 ~ 34619367 (-) True fbxl6
XM_036952539.1 mRNA downstream 127244 34595240 ~ 34610583 (-) False fbxl6
XM_021571738.2 mRNA downstream 127320 34595240 ~ 34610507 (-) False fbxl6
XM_021571737.2 mRNA downstream 127322 34595231 ~ 34610505 (-) False fbxl6
XM_036952540.1 mRNA upstream 465 34795394 ~ 34808500 (-) True sall3b
XM_021571750.2 mRNA upstream 112194 34907123 ~ 34923956 (-) False zbtb22a
XM_036952542.1 mRNA upstream 139679 34934608 ~ 34943891 (-) False LOC110496076
XM_021571759.2 mRNA upstream 202543 34997472 ~ 34999239 (-) True LOC110496078
XM_021571760.2 mRNA upstream 217081 35012010 ~ 35016157 (-) True LOC110496079
TU1763897 other downstream 575369 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 1063596 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 1126934 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 1126934 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 1346075 33391339 ~ 33391752 (-) True G1540473
TU1765772 other upstream 342708 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 380377 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 551966 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 657689 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 700393 35495322 ~ 35496982 (-) True LOC118941140

Expression Profile