RNA id: XM_036952540.1


Basic Information

Item Value
RNA id XM_036952540.1
length 5704
RNA type mRNA
GC content 0.48
exon number 6
gene id sall3b
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34795394 ~ 34808500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATTCGGCTGCAGGGCTTCTCATAATGGACTAGAGGCGGAAGCTTCTAAAGAATAGCAGCTGCGGGCAAGGAAGACCAAGAACCCGCTCCACGGAACGACCATCGCAATGAGATTCGCCGTCGGTCTGGAAATAGGAACATTACTTTTACGCAATAACTAGATTGTTATGCACGAAAACAGAGATAGGGATTCGATCACGGCCCCGTGACATCTTTTTGGGCACCTGAACCGGACTCTTGCTatcttcattttttttgttttactttccCCCTCCTCCGCTCAGCTTCATGAAAAATAGAAGACGAGGAGGATAAAGGCAATGGGCAACACTTTTCCAGCCAGCACTTTCTTATCCATGTGTAGACCTCCAAAATAAAGTACAATACTCAATGCGTGGGAAAAAAACAGAAATGAAAGTGGAGTAAATTAAAAGAAAGGACTTCTGATAACAATGGGACTTAAACTTAAAGACGCGTTGGGGAAAAGGTAGGCTACAATAAAAACGAATGGCacaaatacatttacaaaagtGTGGCGGGTAAAAACAGAACAAAACCAACCAGAAGGGAGAGAAATGTTCTCGACTTAGTAATGTCCATCACTGTTGTATGGTGGACCGTGCGGAAAGACAGGTGAATAGGAAGCAAAGTATAGTGTAATTATCAAATCCATCCCTCATTTCCATATCTAGTGTGGGTCAGCTGGACCTTAGCCAATCCCCCATCGAAAGCCAATCCCCCATCGAAAGCCACCAAGAGTCATCAAGCATTATCCTCCATCATAATTACACCGACATGCGCAATCTGCACATGGATGCTGATGTATCCGCCAAAGGCAACAAGAGCAACTAGCAGAGAACTGACAACATGTCCCGCCGCAAGCAAGCGAAGCCACAACATCTCAAATTGGACGAAGAAGCGTTGCAAACCGACGTCGCCACAGAACATGCTCTATTGGAGGGAATGGATGAGGAGGAGCGCCGCAGTGGCATTGAGGAAACCCATGTGTGTAGAAACATTGCTGAGTACTTCACCTGGGCCGAACTGTATGAGCACCAGAGAAGCTGCACAGAGGACCTTCCTCAGGTCCTCATTGTGAAGGAAGATGAGAGGATCCCTGAACCTGAGGGGTCCCCAGCTGGATCCTCTCCAACCCTCAGCCTGGCCATTCTTAGCCTGGCCCACAGGGACTCAGCAGACATGGAGTCAGCGGACGGGGGCCTTGAACTGGTGGAGCCTATGAATTATAATGATAATGACAGCACAGATGTGTTAGAGGAGATGAACATGGGTGAGAAGGAGGATGAATCCATGGAGGTGGAGCAGCAGCACCACGGCAAATATAAGTCATCTAGCTCCCAGAGTCCCCCAGATATAACTGAGTTGGCTATCCCTTCAGCTCAGTCGTCCTCTGTGACTAGCAGCATGCCCAGTACGAACGTAACACTGGAGATCCTCCACGGTACCCGGGTGGCTGTTGCCCAGTTCTCCCAGAGCCTCCACAGTAGTGGGGCAGGAGGGAAGGCGGCCACAGCGGCCATCCCAGTGATCCTAGAGCACCTGCTGGCTTTGCAGGAGCAACAGGTCCACCAGTTGCAGCTTATTGAGCAGATCCGTAGCCAGGTGGCCTTCATGAACAGACAGCCCACACAAACAGCACTAAACCCAGTCTCCAGGGCCCTATCACTGGCACCAAACCCTTTCCCCTCCCAAGGCCTCATTGCTCCCCCTGTCCTACCACTGTCTGGGACCATACCCTCTGCTGTTAATGGACAAGCGTCTGTGTCTTCGGCATCTGTGCTTGAAAGGTCCCACACACTCTCCAAACAAACGTCATATGGACAGGCCCACATGAGAGACGCTAGATGTACCTCAGCTCCCTCTGACAACTCTGCCCCTCCCCCTACTAGCTGCAACAATATTTCCTCATTACATCCTCCCTGCATGGGTTCATACTCACACACAAGCAGTAGCTGTACTCAGACCCTGACCTCGTCCAGCCCACTCTCCATGCAGGACCAGAGCAACAGTCTCCTCAGCTCACCATCCAGCCTGCCGTTTCTACCTCAGAGCCCCCCCAGCAGTGTCATCTTCCCCAACCCCCTGGCCAGCATCGCAGCCACGACTAATGCCCTCGACCCCCTCTCCGCCCTGATGAAGCACCACCGGAATGGCAAGCTGCCCAGTGTGTCCATGTTCGACACCAAGCCCAGCCCCGAGGAGCCCTTTTTCAAGCATAAGTGCAGGTTCTGCGCCAAAGTGTTTGGCAGCGACAGCGCGCTGCAGATCCACCTGCGCTCTCACACCGGGGAGAGGCCCTTCAAGTGCAACCTCTGCGGCAATCGCTTCTCCACTAAAGGGAACCTGAAAGTCCACTTCCAGAGACACAAAGAAAAGTATCCCCGTGTTCAGATGAACCCTTATCCAGTGCCGGAATATTTAGACAATGTGCCAACGAGCTCTGGCATTCCCTATGGCATGTCATTCCCTCCTGAAAAAACAGGAGCCACTTGGCTGGATAGCAAGCCTGTTTCAGCGACGGTACCCACCTCTATGGGCATTCAGCTTCCCTTCACTCTCACTACTATGGGAAGCTCAAGTGGATCTCTAAGTGTCACACCACCCATCAAATCTCCTTTTAGGCCTTCCCCAGCCTTAAGTGAATGTGTGTCTTTGTCGCTGAACACTACAGGCAATGAAACTAGTGTTCCCACAGCTTTAGAGTCTCCACAGTCTAATCAGGAGGGGGAATCCTCCCATGTCTTGAAAGCAGAGGAAATTCATCTGTCCCAGAACTGGATGACTAGACCCAGGGTGAGTCCACTTACTGTGGCAACAAGTAAAGCCATGACTATTACCACATCCACACCTGAGCCCAGTGCTCTGACTTCCAACTTTTCACCACTTTCCCTGGCCTCTGACCCGTTCAAAGCAAAGTTTCCATTCGGTGGCCTCCTGGACTCTATGCAAACGTCAGAGACCTCAAAGCTCCAGCAGCTGGTGGAGAACATAGACAAGAAGATAACAGACCCCAACCAGTGTATCCTCTGTCACCGCGTGCTCAGCTGCCAAAGCGCGCTGAAGATGCACTACCGTATCCACACTGGGGAGAGGCCCTTTAAATGTAAGGTGTGTGGCAGGGCTTTCACCACCAAAGGAAATCTGAATACCCACATTGGTGTCCACAGAGCAAACCCTCCTCTCCGGGTTCAACATTCATGCCCCATCTGCCAGAAAAAGTTCACCAACGCTGTAGTTCTACAGCAGCACATCCGCATGCATATGGGAGGTCAGATCTCAAACTCACCCTTAATGGACTGCCTACAGGACCTCGACAATGATCTCTCCTTCCACGAGAAGAACTTTGACAGCCTGAATAAATATGACAATGACCTCATGTATGACAACTCCatgggggaggaagaggatgatgatgaagaagaagaagaggtagAAAATATGGAGGGGGGTGTTGATACCCTTAATCCCCTGAGCTCTGTCTCTAGTTCTTCTCCCAactctgatgctgttgtcttcagCATAGCTGCACTGGAGAACCAAATGAAAATGATAGACTCCACCATGAACCTAAACCACTCCTTTGGGCTAAAGTCAATGATGAATGGTTTTATGGACAGTGAGCGCCATGCTGCTATCCACTCCTCTATAGTGGGAGAAGGACAGAATCACAATGCAGCCGGCAGCCCAACTGTGTCTGAATCGTCCACCTGTATTCATGTACCAGTGTCACCTGCGCAAAGCAATTCTGAGGTCCACCTCTGCAATTCCCCATCTGGGAAGCACAGTGGAGAGTCCCAAGAGATCACAGCCTCAGTGAAGAGTGAGCAATTTGATTCGTCCACCTCAACTCCGGTACTGGAAAATGGAGTGACTTTGGATCTGAGAGGGTTGCAACCTAACAGGCAGTGTGTGAAACAGGAGAGTCCTTACAGTACGCTGTTCCTGAGTAAAGAACGTGGTTCCAGCCAAAGCATTCCTAGCCTGATTACCAGCATTGCGCCAAGGATGATCAAATCTGAAATGAATGGGCACCATCGACCAATGAACTTCAACGAGGGGCTGCATCATCCATTTGGCCTCCAGGTCCCTGCTGCTCCTCCATCTCTGGTGAGCCCAGGAATCACCTCTCTGCTTGGGCCACCTCAACTTCGACGGACCCCGAAGCAACACAACTGCCATGCGTGTGGAAAGAACTTCTCCTCAGCCAGTGCTCTACAGATCCATGAGCGGacccacacaggggagaaacctttcGGTTGCTCCATCTGTGGCAGGGCATTCACAACTAAAGGAAACCTGAAGGTACACATGGGCACTCATATGTGGAACAACGCACCAGCCAGAAGAGGCAGGCGTCTGTCGGTGGAGAACCCCTTGGCCTTGCTGGGTGGGGAAGCTGCCATGAAGTTCGGAGAGATGTTTCAGAAGGACCTGACGGAACGGGCCATGAACGTGGATCCAGGGTTCTGGAACCGCTACGCATCAGCTATAACCAACGGCCTAGCCATGAAGAAGAATGAGATCTCAGTGATCCAGAatgggggtattctacagctttATCCCATGACGGCAGGCATGGACAGAGTCAGCACTGGGGGTAGCCCACCAATGACCAGTCTTGGAAAGACAGCCATGGACCTTGGAATTAACCGACCCGACTTTTCTTTGTTAATTGGTGACAGTAAAGAGATTGAGATCAATTAAAAATAATTTGAATGGCAGATTAATAAAATATATAGATTATACAAACAATGTAGAGAATAAATGATTGATTTATTTGTAAAAACAAGTTGACTATGTATTATATAgagataaaaaatgttttattaattcacagacctacagtatttcATTCTTTTTTTATTGAATTGTCCATATGCAAATGTTGGTTTTGCCCACACAAACAGGTTCTTTCACTTCGTCCATGGTGcttactatagacacacactctATTACTCTAGAAAGGGAAAATGTGATATAGAAATGCAAAGAGATGAATCTGTCGGTTACTCACTGCTGCTAGTTGGTGCAAAGCACAAATGTCTTTATAACGAGGCCTCACATGTAGGCCTGCAGCATTTCAAATGGAAGAATTTGTGCAAGTAACTGAGCAAGCCTAAGGTTGGACAATCATTTATTGAATTTACTTCAGCTTAAATTGCATGTCCCATTTCTTCACTGGGCTTTACTCTTGACTTTATGCAGTCTATCAGCATTTATTTCAGCTTCATCATTTAGGTTATTTTCTCTGCATCCAAAATGTATATTAGATAAAAATGTGAAAACAATCAATTGGCTTACAGATGCATACATAAACAGAATGTAAGCTATATGGTTTAGTCAAAAAGTTGAATTTTTTGTTTATCTTGTTGTTAGAGATTGAATCATTTTATCTCCTCCAATGAGAACTGTTTTTTAGATTTCTGAATTTGATGTACAGAAGAGGCATCACAGATACAAACTAGAGACATTTGCCTCTTTTCTGCATGAAGGctacagacaacaacaaaaaattagtGTGCATATGGTAGGATGAGCTAAAAAGCAATGGAAGTGGATCCTCTCAATCTCAGCAAATATTTTTACAAGCAAAATTTACTGGGCTGACAGACATCTACTGAAAGAAAATAATTTATTTGTCTAGATTACAATATTTCATGCTACTTTAAATAAATATCTACA

Function

GO: NA

KEGG:

id description
K19871 SALL; sal-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765524 lncRNA downstream 51248 34743623 ~ 34744146 (-) True G1542753
TU1765501 lncRNA downstream 126407 34668766 ~ 34668987 (-) True G1542731
TU1765499 lncRNA downstream 129898 34665242 ~ 34665496 (-) True G1542729
TU1765492 lncRNA downstream 136236 34645141 ~ 34659158 (-) True nfatc1
TU1765490 lncRNA downstream 153165 34641813 ~ 34642229 (-) True G1542721
TU1765639 lncRNA upstream 90808 34899308 ~ 34899566 (-) True G1542857
TU1765646 lncRNA upstream 91647 34900147 ~ 34900382 (-) True G1542864
TU1765647 lncRNA upstream 91901 34900401 ~ 34900639 (-) True G1542865
TU1765649 lncRNA upstream 95643 34904143 ~ 34904354 (-) True G1542867
TU1765651 lncRNA upstream 96537 34905037 ~ 34905317 (-) True G1542869
XM_021571743.2 mRNA downstream 465 34737827 ~ 34794929 (-) False atp9b
XM_021571744.2 mRNA downstream 465 34737827 ~ 34794929 (-) False atp9b
XM_021571742.2 mRNA downstream 90573 34645116 ~ 34704821 (-) False nfatc1
XM_021571736.2 mRNA downstream 176027 34595240 ~ 34619367 (-) True fbxl6
XM_036952539.1 mRNA downstream 184811 34595240 ~ 34610583 (-) False fbxl6
XM_021571750.2 mRNA upstream 98623 34907123 ~ 34923956 (-) False zbtb22a
XM_036952542.1 mRNA upstream 126108 34934608 ~ 34943891 (-) False LOC110496076
XM_021571759.2 mRNA upstream 188972 34997472 ~ 34999239 (-) True LOC110496078
XM_021571760.2 mRNA upstream 203510 35012010 ~ 35016157 (-) True LOC110496079
XM_036951038.1 mRNA upstream 208478 35016978 ~ 35018421 (-) True LOC110496800
TU1765523 other downstream 55755 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 632936 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 1121163 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 1184501 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 1184501 33604148 ~ 33610893 (-) True LOC110496048
TU1765772 other upstream 329137 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 366806 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 538395 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 644118 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 686822 35495322 ~ 35496982 (-) True LOC118941140

Expression Profile