RNA id: XM_021571747.2


Basic Information

Item Value
RNA id XM_021571747.2
length 1761
RNA type mRNA
GC content 0.41
exon number 5
gene id mbpa
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34883492 ~ 34898413 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGGACGGCACCTTCAAAGACTGCCCATTCAACGTCAGACAGATAGAAAAGTATCCAAGGAGCAACATCAGAGTGTTTACAGAGTTGGTTTGAAAGGTCTTCATCCAAGATACAGAGCGGTCGTCCAACCCTACCTAACCACTATCCAGCATGGCCACAGCGAGTACCTCAGGGCAAAGCTCATTTGGACTGAGCAGGAGGAAGAAGGCCCCTGGCCTGATGGATCAGATTAGCACGTTCTTTGGAGGTGACAAAAATAAAAGGGGCAAGGGGTCCTTCCGGGGTCACGCCACCTCCCCCAAGCCAGCCCCTCGACGTCGGGCTAATGAGAATGCAGTAATGCATTTCTTCAGGAGCTTGAGCGTGACAGCCTCTCCCCGTCCCAAGTCCAGGGCCTCGCCACCACATGCTGATGCCACAAAGTCATCTTACAGATGCCGCAGAGACCAAGGGACACTGTCCAAAATCTTCAACCGGGAGACCAAGTCCCGCCTTCCCCCCAAACGCTGGAGCACCATCTTCTGAGCTCTCCTTAGATGAGAAAACCATGGAAAAGGATGAAGAGGAGAAAGTTCTCCGTTTGACAGACTCACAACAACCCTTGACAAcgttaacacactaacaccaGCATGTCTCCTTTGTTTGTAGATAGTGACACAATCTTGGCGCCTAATATTTAGCATGCTGGGATGAAAGTGTGCAGTCATTGAGGGTGGGAGCTGTTGAGTTTGTCAATAGCCTTATAATCTGAGTTTTAAGGGAAAGTTCTCCTTTAGAGTTTTGGAAATGCAACAAAATGATTCTACTCTAACATCTGGCTCAATGGGCTATTCGCCTCATCTAGCGCCCTGTTCTGATGACGCTAGAGTCTACTATTAATGGGTTGTTGTGTTTTTCTATTTGTCTGCATTTTGTACGTGGATGATCTATTCTACTCATAGAAATAGGCTTTATATTCCCCCTTGTTTCTTTTAGGTACTCAAACACACAACTGTGTTTCGTTTTGTACGTCGCCAGTTATGTGAAATCTAGTCTAAGAAAGTGTTTGTGGGTCTTGTTATGCATGCAATTGTCAAAATTGTCTTGTGAAAGTATGTTATGAATGCAGTACTTGCGCATTTGAAAATGTAATGCGAAAACCTGCAAAAGTTATAAACTAACATTATGTAGTATAAAAATTGCAGTTGATTCGTTTAGCCATACTACAAAAGTCGTGTTTTATTTAGGCACTTAAATCATCAATGTTGTATAGTGTTATGGTGTCCAAGCCTATTAAAACAGCTAATTAAAACAAACGCCCTTCCAAACTGCACTGTTAAACTTTgcaaatatatatttcaaaactGTTTAAGAGCATTTAACATATTTTCTGACTAATCTTTAAATTTGTAGTTTCAATGCTTTGGTTAATTTGAAGTTAGCTTTTTGAGTAGAAGAGATGGTGAAATGGAAAGTTGTTAAGAGGTCTAATAAATCTCCAAAGTAAAAACGCGGGTAAGAGCATGTAGTTTTGCAAATTCTCTCTCAAACAATTGTATTATGTGTTTGATTAATTTGTCACTTCCCTTGTGTGCACATATCTGTCTGTTCACTGTGAGTGTTCAATAAAAAATATGATTAAAACTTTATAAAATCATACATTTTTCTGAGGGTGCTCAATAACATAGACTTGGTGCTAAAGGTGGAGAAATGGATTGAAGACCAGAATAATGTGTTTCTTGTAAAATGCTCTTTGAAATAAAGATTTTTAAATTGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1764404 lncRNA upstream 10579 34872693 ~ 34872915 (+) True G1541793
TU1764326 lncRNA upstream 91336 34782152 ~ 34792158 (+) True G1541720
TU1764328 lncRNA upstream 102656 34778921 ~ 34780838 (+) True G1541721
TU1764317 lncRNA upstream 132997 34748936 ~ 34750497 (+) True G1541713
TU1764298 lncRNA upstream 140113 34741475 ~ 34743381 (+) True G1541696
TU1764419 lncRNA downstream 7514 34905927 ~ 34906162 (+) True G1541808
TU1764439 lncRNA downstream 31110 34929523 ~ 34929843 (+) True G1541827
TU1764440 lncRNA downstream 31566 34929979 ~ 34930187 (+) True G1541828
TU1764427 lncRNA downstream 69577 34967990 ~ 34968339 (+) True G1541815
TU1764422 lncRNA downstream 70233 34968646 ~ 34969595 (+) True G1541811
XM_021571740.2 mRNA upstream 243537 34633226 ~ 34639957 (+) False LOC110496067
XM_021571741.2 mRNA upstream 250537 34627456 ~ 34632957 (+) True LOC110496068
XM_021571735.2 mRNA upstream 259258 34618554 ~ 34624236 (+) True LOC110496065
XM_021571718.2 mRNA upstream 308557 34502936 ~ 34574937 (+) False pleca
XR_002469505.2 mRNA downstream 20124 34918537 ~ 34921751 (+) True LOC110496074
XM_021571751.2 mRNA downstream 61010 34959423 ~ 34967895 (+) False LOC110496075
XM_021571752.2 mRNA downstream 61010 34959423 ~ 34967895 (+) False LOC110496075
XR_005037436.1 mRNA downstream 61010 34959423 ~ 34986188 (+) True LOC110496075
NM_001160595.1 mRNA downstream 233348 35131761 ~ 35139834 (+) True olah
TU1763847 other upstream 753835 34128341 ~ 34129659 (+) False LOC110496058
TU1763554 other upstream 804420 34078718 ~ 34079074 (+) True G1540996
TU1763040 other upstream 1345930 33535276 ~ 33537564 (+) True LOC110496043
TU1763041 other upstream 1392373 33489337 ~ 33491121 (+) True G1540551
TU1762993 other upstream 1425070 33455560 ~ 33458424 (+) False LOC110496797
TU1764613 other downstream 384190 35282603 ~ 35283706 (+) True G1541989
TU1764676 other downstream 476831 35375244 ~ 35386463 (+) False G1542037
TU1764671 other downstream 476967 35375380 ~ 35380006 (+) False G1542037
TU1764682 other downstream 476967 35375380 ~ 35386463 (+) True G1542037
TU1764735 other downstream 503424 35401837 ~ 35432356 (+) False G1542052

Expression Profile