RNA id: XM_021571750.2


Basic Information

Item Value
RNA id XM_021571750.2
length 2879
RNA type mRNA
GC content 0.53
exon number 4
gene id zbtb22a
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34906715 ~ 34923956 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGACAATAAATAAAGAGGGGTTGGTAGCTGCCCAAACCTACATTATTTTAGTTCTGTGCTACTGTAACGACATGAGTTAGCAATGGTTGGAACTTGGTACATGACGGGCAGTCGCAGACAAGCTCTACACTCCCACCCTACACCCACTTGACATGATGGAACTGTGTCGAGTTTGAGTGTGCGTTACCAAACGAGAAGGACTGAGTGATTGAACAACGCTGCAAAGAATGTGCTTTAGCTGAAATCACTGGCATATGTTGAAGACTCGTTTCGCGTTTGGAGAACCTGATAAGAGGCACAATGGATCAGGACTGCATTGTCTCTGGTGCCCCTGCTGGCCCGGTGGTCCAAGTATGCTTCCCCAGTGTGCGTGCAGCAGTTTTGGACAGCCTGAATGGACAGCGGGAGGAGGGCCGGCTCTGTGACCTCTCCATCCAGGTGCAGGGACAGGTGTTCAGGGCCCACCGCTGTGTGCTGGCTGCCTCCTCGCCATACTTTCACGATCAGGTGTTGCTGAAGAATGTGACGACAGTGTCTCTGCCCTCTGTCATGGACCCTGTGGCCTTTGAGAGTGTCCTGAGTTCAGCCTACACCGGCCGACTGAGCATAGTGCGTGATGACATTGTCAACTATGTAACGGTAGCCAGCTTTCTCCAGATGTGGCATATTGTTGACAAATGCACAGAGATCCTGAAGAGACCCCGACCCCCAACAGAATGCAACCCTGTGGATGTTGCAGCTGCCACACGCCATGGTGCCTCCTCAAGGCAGCAGTCCCCAAGCAGCACTGAGTGCctatacatggagagagaggggaaagagaaggagacGAGGACCTACGGCCAGGTGCAGAATGCTCTGCCGCCATTGGCCACGTGGAGGAGGCCCCATCAGTTCCCCAGGTGGGGCCACCCCAGGCCCTCACCCCAGCCAGCCATGTCCATGCCTGTCCAGAACCTAGCTGACTCACAGCTGGACTCCCACCCTGCTGGGGAGAGTGACTACTCCAGCTGTGAGGAGGTGTGGATGTCCAGCCACAGCAAAGCCAGCCCCCTAAGCCATCATGATGGGAGAGGACTGGACCATAACCACACCAGGCACGGGGGATTTCCTGGTGAGGCATTGAGActgagagctagacagagacagagggcagCACCACCAAGTCCTGAGAAGCTGCATGGCAGGGACAGAGGAAGTGGCTATGGGGAAGATCCTCAGGAGAAGAAGGGGACTGAAAGAGTGATTGAAGCAAGTGAAGGAATGGGAAAAGAgttggaagaggagaagagggagggtcCTGAGCTGAGAGGACACTCTGTGGACTTCCACTCTAGTGTACACCAaggtgaggagggaggacagCCAGAGGGGAGAAAGATCTCAGGGGAGCTgcagaagaaagaggagagacagtTGGGGAGAAGTTCAGCCCTGACTTCTCCCCATGCTGGGGAACCAGATGAGGTGATTCCTGGACCCTCCTGCTTAGCTTCTACACCCTCTACCCAAAAGCAGTGGCAGGCGAGTCCCTGGTCTCAGCAAGTAGCTAGGCTGCAACCTGGAGAGGAAGACTACAGAAGAGAAGACGACGAAGAAGATGACGAGGGGGAAGTGGACTTTGGCCGATTTGCGGATGGTGCCTTTGGAAGGGAAACCTATGATGAGATTGAGGATGGCACCGGACAAGTTTCTCAGAGACCCTTAGTACCTACCTCTCCTGATGACAATGACTTTATCCTGGGGGCCTCAGGGTTGAACTGGCCCAATGGGTCAAACATGACCCATGATGGTGGTACCCCAACCTCCACCTCCAGCTGCCACCTGTCCCCATCTCCTGCTCCATTCCCCCCTTCCTCCTCACCCCCCAtcccatcttcctcctcttccatctcccttGCCGGGGCCCCTTACACAGGAAAAGTGCACTTCTGCCACTGTGGGAAGGCCTACACCCTGAAGAGTATGCGTGACCGCCACGTCAAGATGCAGCATCTCAACCTGCGGCCCTTCGCCTGCCCCGTGTGCGCCAAGAGCTTCAAGATGAAGCACCACCTCACCAAGCACCTGAAGACTCACGGCGGGCTGCGGCCCTATGAGTGTGGCCTGTGTGGGAAGAAGGTCATCTGGAGGGATAGTTTCCTGCGCCACCAGGCACGCTGTGAGAGACTGGCCGAAAGCTACGATGGAGCCGCTGCCAGTAGTAACACCACAGCGGCTGCTGACATGGACGATGGTTATGCCTATGGGTTCAAGGAGGGGGAGGGTTTTTTTTCACAGGGCGGTCAGGTGAAAGTGGAGCAGGCAGACTGTCAGGGGGAGGCGGAGTCTGGGATgagtgtgggggtgggggtggggttggGGCTGAATTAGGCTCTCAGTCAAGGATTGTGGTTAGTCACAGCTTTAAGGAGGAAGCCAGCAACAGGTTTAGCTGAAGCTAAAGGAAGGAGGACGGTGAAATATTGTGTAATATAGGGCCCGCAGCACTTGAAAGTGCTATTAGGTAAGGTGATAATTATGTTCATCATGGTCCATGTGTAAACCATTAACTCAGATCAATGTTGATACGCCTGTTTGAACAACTTGTATGAGGGAGATTTCTGCgttattatttatttaaaggACTATCCCATCATGTCATTGATATCTCGAGAGAGGGAAGAAACATGTCATTTGCTCAATGTGAATCATGTGGTTTTAAAAGTTTGAAGTGTGATGTGAGTGTGTATATTTTGCATTTGATTTTgtatacgagatcttcagtttcttgccaatttctctcatggaattgccttcatttctcagaacaagaatagactgacgagttccagtagaaagtgctttgtttttggccattttgagcctgtagtcgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765651 lncRNA downstream 1806 34905037 ~ 34905317 (-) True G1542869
TU1765649 lncRNA downstream 2769 34904143 ~ 34904354 (-) True G1542867
TU1765647 lncRNA downstream 6484 34900401 ~ 34900639 (-) True G1542865
TU1765646 lncRNA downstream 6741 34900147 ~ 34900382 (-) True G1542864
TU1765639 lncRNA downstream 7557 34899308 ~ 34899566 (-) True G1542857
TU1765663 lncRNA upstream 1767 34925723 ~ 34925946 (-) True G1542881
TU1765664 lncRNA upstream 5207 34929163 ~ 34929379 (-) True G1542882
TU1765665 lncRNA upstream 5691 34929647 ~ 34929925 (-) True G1542883
TU1765667 lncRNA upstream 7051 34931007 ~ 34931240 (-) True G1542885
TU1765628 lncRNA upstream 9083 34933039 ~ 34943879 (-) True LOC110496076
XM_036952540.1 mRNA downstream 98623 34795394 ~ 34808500 (-) True sall3b
XM_021571743.2 mRNA downstream 112194 34737827 ~ 34794929 (-) False atp9b
XM_021571744.2 mRNA downstream 112194 34737827 ~ 34794929 (-) False atp9b
XM_021571742.2 mRNA downstream 202302 34645116 ~ 34704821 (-) False nfatc1
XM_021571736.2 mRNA downstream 287756 34595240 ~ 34619367 (-) True fbxl6
XM_036952542.1 mRNA upstream 10652 34934608 ~ 34943891 (-) False LOC110496076
XM_021571759.2 mRNA upstream 73516 34997472 ~ 34999239 (-) True LOC110496078
XM_021571760.2 mRNA upstream 88054 35012010 ~ 35016157 (-) True LOC110496079
XM_036951038.1 mRNA upstream 93022 35016978 ~ 35018421 (-) True LOC110496800
XM_021571761.2 mRNA upstream 127439 35051395 ~ 35093815 (-) False ago3b
TU1765523 other downstream 167484 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 744665 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 1232892 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 1296230 33602474 ~ 33610893 (-) False LOC110496048
TU1765772 other upstream 213681 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 251350 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 422939 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 528662 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 571366 35495322 ~ 35496982 (-) True LOC118941140

Expression Profile