RNA id: XM_036951038.1



Basic Information


Item Value
RNA id XM_036951038.1
length 963
RNA type mRNA
GC content 0.61
exon number 2
gene id LOC110496800
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35016978 ~ 35018421 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGCAAGTGCCCGTCAAGGACTGTGTCTCCCTGACGGTCTACTCCTTCACGTTCCTGCTGGGCCTCCCCTCCAATCTGCTGGTGCTCTTCGTGTACGTCCGCAAGGCGCGCAAGCGGGGTGCCACGCCCAACGTGGTATACGCACTCAACCTCTGCCTGGCTAACCTGGCACTGATGGCCTGGCTGCCTGTCAAGGCCTTGGAGACTTTCCTCCAGGACTGGGCTCTTccatcgcccctctgtcccgtcTACAGCTTCTTCTTGTTCTCCTCGATGTACGGCAGCTGCCTCTTCCTCACGGCAGTGACGGTGGGCCGCTACCTCAGCATCGCCTTTCCCATCAGCTACAAGCTGTACCGGCGGGGCCGCATCTCCTGCTTCATCAGCGCTGCCCTCTGGGCAGTGGTACTGTTGCACCTGAGTCTGGGCCTGGTGGCAGAAGGCGGGGGTGGTTTCGTGTCCACCTCCAGCCATAATGTGTCAGTCTGCTTTGAGAACTTCACCCAGGACCAGCTGGACCTGCTGCTGCCATTGCGCCTGGAGATGGCGCTCCTCCTCTTCCTAATGCCACTGGCCATTACCGCCTTCTGCACGCTGCGCTGCGTAGCCCTGGTGTGGCGGTCCTGCTTGCCCGTCCTGGGAAAGAGGCGCGTCCTGGCCGTGGCCCTTTCCACACTGGCTGTGTTTGTGGTTTGCTACGTGCCCTACAACGCCTCACACATCGTGGGCTTTGTGCTGCAGGAGAACGTCCACTGGAGGACTGAGGCCATGCTGTCCAGTGCATGTAACGTCTTCCTGGAGCCTGTGGTCATGCTGATGCTCTCCCCGGCAACGCCCCGCGGCCTCATGGGAAGGCTCTGTGGAAGGCCCAGCAGATACAGCCGGACAGAGGGGCGCCATTGTAGCAAAACCATCACACGGGACCCTCTAGCTAATATGGGGCAGGAGGACAATTTCAACTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1765698 lncRNA downstream 42223 34974476 ~ 34974755 (-) True G1542914
TU1765696 lncRNA downstream 43883 34972215 ~ 34973095 (-) True G1542912
TU1765629 lncRNA downstream 47460 34968643 ~ 34969518 (-) True G1542847
TU1765633 lncRNA downstream 48430 34967990 ~ 34968548 (-) True G1542851
TU1765630 lncRNA downstream 49101 34964360 ~ 34967877 (-) True G1542848
TU1765641 lncRNA upstream 20787 35039208 ~ 35050281 (-) True G1542859
TU1765763 lncRNA upstream 101556 35119977 ~ 35120250 (-) True G1542979
TU1765774 lncRNA upstream 125403 35143824 ~ 35144167 (-) True G1542990
TU1765777 lncRNA upstream 129220 35147641 ~ 35149555 (-) True G1542993
TU1765780 lncRNA upstream 135891 35154312 ~ 35154536 (-) True G1542996
XM_021571760.2 mRNA downstream 821 35012010 ~ 35016157 (-) True LOC110496079
XM_021571759.2 mRNA downstream 17739 34997472 ~ 34999239 (-) True LOC110496078
XM_036952542.1 mRNA downstream 73087 34934608 ~ 34943891 (-) False LOC110496076
XM_021571750.2 mRNA downstream 93022 34907123 ~ 34923956 (-) False zbtb22a
XM_036952540.1 mRNA downstream 208478 34795394 ~ 34808500 (-) True sall3b
XM_021571761.2 mRNA upstream 32974 35051395 ~ 35093815 (-) False ago3b
XM_021571762.2 mRNA upstream 32974 35051395 ~ 35093817 (-) True ago3b
XM_036951039.1 mRNA upstream 132930 35151351 ~ 35203984 (-) False LOC110496081
XR_002469509.2 mRNA upstream 329523 35347944 ~ 35351655 (-) False LOC110496085
XM_021571767.2 mRNA upstream 359378 35377799 ~ 35392845 (-) False si:ch73-347e22.4
TU1765523 other downstream 277339 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 854520 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 1342747 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 1406085 33602474 ~ 33610893 (-) False LOC110496048
TU1765772 other upstream 119216 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 156885 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 328474 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 434197 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 476901 35495322 ~ 35496982 (-) True LOC118941140

Expression Profile