RNA id: XM_021571762.2


Basic Information

Item Value
RNA id XM_021571762.2
length 4422
RNA type mRNA
GC content 0.53
exon number 19
gene id ago3b
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35051395 ~ 35093817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCATCCCTCACAGTAGGTGGCGGGATGTACATTAAATTGTGCAATCGCCAATATACCATAGAAGAAGACGATATCCGTGACCCGGAATGTACTTAGTTAATCTTGCCCGCTTCACAGCGGTAGTACAGAGAACGCACCGGGGAGTGAAACACCAATTTGCCGGCAGAAGAACACCAAAAGGGTCACTTTTATGGTCGGAAAAAACAAACATGATGTTGATATTATCCTGGCAACTAATGACAAGGTGAAACCCTAAACGATTGAGATATAGCCTTAAAACCGTTCAGGAATAGGAGCAGTGGAGTATCCGAGGCTCTGAAATATTTTCTGGGACTTAAGTCTttgaaaaacaaatatatatattatcacCTGAGAACAATTAGTGCTTTAACGAAAGGAAGGAGACACGTCGTTTAACTTGTGCCGGTTGACAACGGGGGCAATTTGGGAGGATCTCGGGTTAAGCGGACACCCCAGCGGCCCGTGTCCAAATCAGAAACAGAAGCCGGGGTGTCGGCTTGAGAGAGTGGTCGGGTGGAACGTCTCCAACGCTGAGGTAATAGCGTCAGACGAACAGGAGCTGCGTTGAGATTTGGCCATTGGGAGCCGGGGACAGAGACCTCATGAATGGAAATCGGAACTTCAGgaGATGTTGGGGCCCAGGCCCTGTTCTCAGTGCCACGGCGGCCTGGCTTTGGCACCATGGGGAAGCCCATCAAGCTGCTGGCCAACTGCTTCCAGGTGGATATCCCCAAGATGGACGTCTACCTCTATGAAGTAGACATCAATCCCGAGAAGTGCCCGCGTCGCGTCAACAGGGAGGTGGTGGACTCCATGGTGAAGCACTTCAAGGTGACCATCTTTGGGGACCGAAGGCCAGTCTACGATGGGAAGAGGAGTCTCTACACAGCCAACCCCCTACCAGTCGCCACAGCAGGGGTGGATCTGGACGTCACCCTGCCAGGGGAGGGGGGTAAGGATCGCCCCTTCAAAGTGTCCATCAGGTTTGTGTCGCTAGTCAGCTGGCACATGCTGCATGAGGTCCTGACAGGGCGCACCATGCCTGAGCCCTTGGAGCTGGACAAGCCCATCAGCACCAACCCTGTACACGCTGTGGACGTGGTGCTGCGACACCTGCCCTCCATGAAGTACACCCCAGTGGGGCGCTCCTTCTTCTCCGCACCAGAGGGTTACGATCATCCCCTGGGCGGGGGTAGGGAGGTGTGGTTCGGCTTCCACCAGTCGGTGCGGCCCGCCATGTGGAAGATGATGCTCAACATTGACGTATCGGCCACGGCTTTCTACAAGGCCCAGCCGGTGATCCAGTTCATGTGCGAGGTCCTGGACATCCACAACATAGACGAGCAGCCCCGGCCCCTCACCGACTCCCACAGGGTCAAGTTCACCAAAGAGATCAAAGGTCTGAAGGTGGAAGTGACCCACTGCGGGACGATGCGGAGGAAGTACAGAGTGTGTAACGTGACCCGCCGCCCTGCCAGCCACCAGACGTTCCCCCTGCAGCTGGAGAATGGTCAGACAGTGGAGCGCACGGTGGCCCAGTACTTCAGAGAGAAGTACAGCCTGCAGCTGAAGTACACCCACCTCCCCTGCCTCCAGGTGGGGCAGGAGCAGAAACACACCTATCTGCCCCTGGAGGTGTGCAACATAGTAGCTGGCCAGCGTTGTATTAAAAAACTCACTGATAACCAGACGTCCACCATGATCAAAGCCACGGCCCGCTCTgccccagacagacaggaggagatCAGCAGGCTGGTGCGGAGTGCGAACTATGAGGTGGACCCGTTCGTCCAGGAGTTCCAGTTCCGCGTGCGTGACGAGATGGCGCAGGTGACGGGCCGTGTGCTGCCAGCCCCCGGGCTGCAGTACGGCGGCAGGGCGAGCTCGGAACACTTCATGAACCGCACGGTGGCCACACCCAGCCACGGCGTGTGGGACATGAGGGGCAAACAGTTCCACACTGGGGTGGAGATCAAGATGTGGGCAATCGCCTGCTTCGCCACGCAGAGGCAGTGTCGCGAGGAGATCCTCAAggGTTTCACAGACCAGCTGCGTAAGATCTCTAAGGATGCTGGGATGCCCATCCAGGGCCAGCCATGTTTCTGTAAATACGcccagggatcagacagtgtggaGCCCATGTTCAGGCACCTGAAGAACACCTACGCTGGCCTGCAGCTCATCATCGTCATCCTACCTGGGAAGACCCCTGTCTATGCTGAGGTAAAGCGGGTTGGAGACACCCTTCTCGGCATGGCCACTCAGTGTGTCCAGGTGAAGAACGTGGTGAAGACGTCCCCCCAGACCCTTTCCAACCTCTGCCTCAAGATCAACGTCAAACTGGGGGGCATCAACAACATCCTGGTCCCACACCAACGTCCCTCAGTGTTCCAGCAGCCTGTTATCTTCCTGGGGGCCGACGTCACTCACCCTCCAGCCGGAGACGGAAAGAAGCCTTCCATCGCAGCGGTGGTGGGCAGTATGGACGCCCACCCCAGCAGGTACTGTGCCACAGTGAGGGTCCAGAGACCCAGACAGGAGGTGATCCAGGACCTGGCCTCCATGGTGCGGGAGCTCCTCATCCAGTTCTACAAGTCTACCCGCTACAAACCCACCAGAATCATATTTTACAGGGATGGCGTGTCAGAGGGACAGTTCAGACAGGTGCTGTACTATGAGCTGCTGGCGATCAGGGAAGCCTGTATCATGTTGGAGAAGGAGTACCAGCCGGGCATCACCTACATCGTAGTGCAGAAACGCCACCACACACGCCTCTTCTGTGCAGACCGCAATGAGCGGGTTGGACGGAGTGGTAACATTCCTGCAGGCACCACTGTGGACACAGATATCACTCACCCCTATGAGTTTGACTTTTACCTCTGCAGCCACGCAGGAATACAGGGTACGAGCCGACCATCCCATTACCACGTCCTGTGGGACGACAACTGCTTCACGGCTGATGAGTTTCAGCTGCTCACCTACCAGCTGTGCCACACCTACGTCCGCTGCACCCGCTCGGTCTCCATCCCCGCGCCAGCCTACTACGCCCACCTGGTGGCCTTCCGTGCCCGCTACCACCTGGTGGACAAAGAACATGACAGTGCGGAGGGCAGCCATGTCTCGGGGCAGAGTAACGGCCGAGACCCCACGGCCCTCGCCAAGGCTGTTCAGATTCATCACGACACACTGAGGACTATGTATTTCGCCTGAGAGGTAGAATAACCCTCCCAACACCCCACCCTATCAGCCTCTGTGTCCTAGTGGGGGTCAGCCATCGCATATCGGACTTTGGGCTGGCGCAGCTCTGGTCCCGATGAGGGGATGCCAAGCCACGAAGGATAACAACAACCAGGGGGGAGTACAGCAACGTTATGCAATATGAAACCAGCCAATCCTCTCCCAGCCTGTTCTCCTTTGCTGTGTTTTTAATTAATGATACTGCTCCTTGAGCTGTGCTCAACTTTTGCTTTGTCTTACTTTCAAAATGCCAGAGTGTAGAAGACAAGACAGGGGAATTGATAAGGATGGTTTCAGGGGTTGGGTGGGGACATAGCAGGTCCAGTGAGGATCATTCTTGTTCCTCAACCCAGTGCTGATATGATGACTTGCCTATCTATGTTCAATCGTATAAATTGTCCTCTTTTAAATGTCTTCGTTAGCTTATTGTCGTTATATGTGCGTCTTTGTATGTTCTGTAGAAGTCTGATTGCCATGGCGATGCCTGTTAGTCGAGAACGCTTGTGAATCACAGCTATGCCCTTTTTCATAGGGCAAGCTGCTCGCCCAGTTACTCTGCTCTCTTTAAGCCAATGGGGATTTACTTAACACGGCAATCTCTATCTCTATCAAAAGGCATTTACAGaaacaaaatgttttacagctaTTGTTTGTTGTACTTTTAGAATATCAACCCTGGCCACACCATGGACCTACTCAGAACCTTTACGGTTCACTGTGGTAGCTACAGATTTCACTGTGGTAGCTACAGATTTCACTGTGGTAGCTACAGATTTCACTGTGGTAGCTACAGATTTCACTGTGGTAGCTACAGATTTCACTCtctttgtttttattattatttatccttcTGTGATTTGAGATTCATCTTATTTATCATTCATTTTCAGCAATAGAGCACTGTTCGTTTGGTCAAATTTGAACTAAGGAACTGATGTCACACCTTTTAGTGCAATAAGTCGTTAATGCATAAAAAGGGTTCTATGGTTAACATACCGATTTGTATATTTTTGGGCCATTATGACCGGATATGGGCAGGTGATAACGGATAAAGAATGTAAACTGGGGCAAGGATTGATGCCACAAAATGGTTATGTGGGGGTGACATGACACAATACGTGTTTTTTAGTAAATGGAGTGAATTATGTGCCCGTTTTAGGTG

Function

GO:

id name namespace
GO:0072091 regulation of stem cell proliferation biological_process
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0016442 RISC complex cellular_component
GO:0000932 P-body cellular_component
GO:0035198 miRNA binding molecular_function

KEGG:

id description
K11593 ELF2C, AGO; eukaryotic translation initiation factor 2C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765641 lncRNA downstream 1114 35039208 ~ 35050281 (-) True G1542859
TU1765698 lncRNA downstream 76640 34974476 ~ 34974755 (-) True G1542914
TU1765696 lncRNA downstream 78300 34972215 ~ 34973095 (-) True G1542912
TU1765629 lncRNA downstream 81877 34968643 ~ 34969518 (-) True G1542847
TU1765633 lncRNA downstream 82847 34967990 ~ 34968548 (-) True G1542851
TU1765763 lncRNA upstream 26160 35119977 ~ 35120250 (-) True G1542979
TU1765774 lncRNA upstream 50007 35143824 ~ 35144167 (-) True G1542990
TU1765777 lncRNA upstream 53824 35147641 ~ 35149555 (-) True G1542993
TU1765780 lncRNA upstream 60495 35154312 ~ 35154536 (-) True G1542996
TU1765783 lncRNA upstream 71106 35164923 ~ 35165151 (-) True G1542999
XM_036951038.1 mRNA downstream 32974 35016978 ~ 35018421 (-) True LOC110496800
XM_021571760.2 mRNA downstream 35238 35012010 ~ 35016157 (-) True LOC110496079
XM_021571759.2 mRNA downstream 52156 34997472 ~ 34999239 (-) True LOC110496078
XM_036952542.1 mRNA downstream 107504 34934608 ~ 34943891 (-) False LOC110496076
XM_021571750.2 mRNA downstream 127439 34907123 ~ 34923956 (-) False zbtb22a
XM_036951039.1 mRNA upstream 57534 35151351 ~ 35203984 (-) False LOC110496081
XR_002469509.2 mRNA upstream 254127 35347944 ~ 35351655 (-) False LOC110496085
XM_021571767.2 mRNA upstream 283982 35377799 ~ 35392845 (-) False si:ch73-347e22.4
XM_036952548.1 mRNA upstream 283982 35377799 ~ 35392845 (-) True si:ch73-347e22.4
XM_021571782.2 mRNA upstream 306909 35400726 ~ 35404746 (-) False LOC110496091
TU1765523 other downstream 311756 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 888937 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 1377164 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 1440502 33602474 ~ 33610893 (-) False LOC110496048
TU1765772 other upstream 43820 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 81489 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 253078 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 358801 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 401505 35495322 ~ 35496982 (-) True LOC118941140

Expression Profile