RNA id: XM_036951039.1


Basic Information

Item Value
RNA id XM_036951039.1
length 2629
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC110496081
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35151351 ~ 35203984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAGGTGTACTCTAGCCTGAGcgaggacagagaggagcaaAAATACTTAGGGCCAGCACTGAAAATCCAGAGAcggtgagagaggacagagagggagggaatgagagacagACACCAAGATTGATCAAAGAGCAAAAGATTTGAAAAGCATCCAGCTCCAAGATGCCAGCTCTATGGCACTCCACGTTCTTCCTGGTGATTGTGCTGCTTGCCATCAGTAGGCCCAGCCTGGCATCTCAGGCAGGTAATGATGACCTTCAGATGGGCACAGAGCACAGGACTGACAAGGGCACAGAAAATGAAACAACGAACCTTATCACCACCCTGCCCATCGTCACCTGGAACTGGCATGAAATTCAATTCCCGTACCTGATAGTAGTCTGGATCCTGGTCAGCTGGCTCTGCAAACTCGTGTTCCAGCTGATCCCCAGCCTGACCAGTGTGATCCCGGAGAGCGGCCTCCTCATTTGCATCGGTTGGGGCCTGGGCGGCATCATCTACGGGGCAGACAAGGTGCAGTCCTTCAGGCTGCAGcccttcatcttcttcttctacctgcTGCCCCAGATCGTCCTGGACTCGGGCTACTCCATGCCCAACAAGCTGTTTTTCAGCAACTTGGGCTCCATCCTGGTTTACGCAGTTATTGGCACCTGCTGGAACGCTGCCACTTTGGGACTTGCCCTTTGGGGTTGCTGGTTGGGCGGGGCCATGGGTGATATCGACACTGGTCTTCTGCAGTTGCTGTTGTTTGGGAGTCTGATTGCTGCTGTGGACCCCGTGGCTGTGATTGCTGTGTTTGAGGAGGTCCATGTCAACGAGGTCCTGTACATCCTGGTGTTTGGGGAGTCCCTTCTCAACGACGGCGTCACAGTGGTGCTGTTCAATGTGTTTAATGCATTTGTGTCGCTTGGAGGGGCAAAAATCGACGCTGTAGAGATCATCAAAGGCATAATCTCGTTCTTCGTGGTGGCGGTTGGAGGCTCCCTGGTTGGTGTCGTCTTTGCTCTGCTGATCTCGCTCCTAACCAGATGCACCAAGAACATCCAGATCATCGAGCCAGGCTTCATCTTCATCCTGGGCTACCTCTCTTACCTCACAGCCGAGATGCTCTCGCTATCTCCTATCCTGTCGTGTACGTTCTATGGCGTCTGCTGTCAGAAGTATATCAATGCCAACATGGATGAGAGGTCAGTCAGCACGGTACGATACGCAATGAAGGTGTTCGCAAATGGCTCAGAGACCATCATCTTCGTCTTCCTCGGCATCACGGCCATAGATCCGTCTATATGGGTGTGGAACACAGCCTTTATCTTCCTCACACTCCTCTTCATCTTTGTGTTCAGGTTAATAGGGGTCTTTTTTCTCACCTGGATTCTCAACCAATACCGACTGGTTCCCTTGGAGTTTATTGATCAGGTAGTGATGGGCTATGGTGGCCTACGAGGGGCAGTAGCCTATGGCCTGGTGGTCTCGCTGGATGAGAAAAAGTACAAGGAGAAGAACATGATGATCAGCACCACCCTCCTAGTGGTGTACTTCACTGTCATGCTGCAGGGAATAACCATGAAACCACTGGTCAACTGGCTAAAAGTGAAGAGAGCTGCAGTGACAGAACGCACACTAGCTGAAAAAATACAGAATAGGACCTTTGACCACATTCTTGTCGCCATAGAGGATATTTCTGGACAAATAGGACATAATTACATGAGggacaaGTGGAATAACTTTGAGGAGAGGTGGTTGTACTGGCTCTTGATGACGCCCTCTGCCAAGAAGTCTTGTGACCACATATTCAACATCTTCCACAGACTCAACCTCAAGGATGCCATGAGCTATGTGAAAGAGGGTGAACGCAGAGGCTCATTGGCGTTCATTCGGAAAGAAACCAAGATTGATGTGGATTTCTATAAGAAGTTTGGTGCCAACTTCTCAGAGATGATGCCTTACATCATGACAGAAAATATGGGATCGGATCATGTTCCAGTCTCCTCCATCTTATGGAACAGTGTGCCCTCTGTCTGCCTGGACATGCATGAGCAGGACCTGACGATGAGGGAGTCAGAGGACTTTAATGCACACCATCTACTGCAGCAGCACTTGTACAGAGGCAAGAAACAGCACAGACACAGGTGCAGTCGGAAGCACCTCGAAGTCAACAAGGACAAGAATGAGGTGCAAGAGATCTTCCAGAGAACCATGAGGAGCCGTCTAGAGTCCTTCAAGTCAGCCAAAACAGGTGTCACTCCACCCAAGAAGATAACCAATCATCTAAAGAAAGACCAGCCACAAAAGATGCCACATGGAAAATCCACGGATAACAGTAAAAGCCATGCTTATGGGGATGAAGATTTTGAGTTTTCTGAGGGAGACAGTACCTCTAGTTGCAAGGCTGCTGACGGTTCATTCCCCATGAGAGCCTGTAGAGGTGCTGGAATCCTGAACCCAGCCTTCAATGCAGAGATGGACCCCATGCCACCAATGCAGCAGATTCCGCCATTGGCTGAAACCAATGGCAGATTGGCTGAAACCGAGGTGGACAGCAGCGCCGTGGTCCCTTCTCAGAGGGCTCAGCTGAGACTGCCCTGGACACCTAGAGTTAGAAGTTCATCTAGGGGTCATGATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765777 lncRNA downstream 1796 35147641 ~ 35149555 (-) True G1542993
TU1765774 lncRNA downstream 7184 35143824 ~ 35144167 (-) True G1542990
TU1765763 lncRNA downstream 31101 35119977 ~ 35120250 (-) True G1542979
TU1765641 lncRNA downstream 101070 35039208 ~ 35050281 (-) True G1542859
TU1765698 lncRNA downstream 176596 34974476 ~ 34974755 (-) True G1542914
TU1765867 lncRNA upstream 67335 35271319 ~ 35271564 (-) True G1543076
TU1765855 lncRNA upstream 75683 35279667 ~ 35280647 (-) True G1543064
TU1765854 lncRNA upstream 78539 35282523 ~ 35283024 (-) True G1543063
TU1765881 lncRNA upstream 102699 35306683 ~ 35306886 (-) True G1543081
TU1765889 lncRNA upstream 112324 35316308 ~ 35316512 (-) True G1543089
XM_021571762.2 mRNA downstream 57534 35051395 ~ 35093817 (-) True ago3b
XM_021571761.2 mRNA downstream 57536 35051395 ~ 35093815 (-) False ago3b
XM_036951038.1 mRNA downstream 132930 35016978 ~ 35018421 (-) True LOC110496800
XM_021571760.2 mRNA downstream 135194 35012010 ~ 35016157 (-) True LOC110496079
XM_021571759.2 mRNA downstream 152112 34997472 ~ 34999239 (-) True LOC110496078
XR_002469509.2 mRNA upstream 143960 35347944 ~ 35351655 (-) False LOC110496085
XM_021571767.2 mRNA upstream 173815 35377799 ~ 35392845 (-) False si:ch73-347e22.4
XM_036952548.1 mRNA upstream 173815 35377799 ~ 35392845 (-) True si:ch73-347e22.4
XM_021571782.2 mRNA upstream 196742 35400726 ~ 35404746 (-) False LOC110496091
XM_021571784.2 mRNA upstream 196742 35400726 ~ 35405239 (-) False LOC110496091
TU1765772 other downstream 12797 35137637 ~ 35138554 (-) True G1542988
TU1765523 other downstream 411712 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 988893 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 1477120 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 1540458 33602474 ~ 33610893 (-) False LOC110496048
TU1765900 other upstream 142911 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 248634 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 291338 35495322 ~ 35496982 (-) True LOC118941140
TU1766170 other upstream 807003 36010987 ~ 36012686 (-) True G1543346
TU1767721 other upstream 2097524 37301508 ~ 37302174 (-) True G1544806

Expression Profile