RNA id: TU1765778


Basic Information

Item Value
RNA id TU1765778
length 1665
RNA type TUCP
GC content 0.41
exon number 3
gene id LOC110496081
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35151351 ~ 35203984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTAAGGGGCTTATCCCACAAGTGCTTAGCTTACCATAGGCAAGCTGCAACTGCAGGTAGCAGTTGCTTTACTGGGTCTGCACTAGTGGAAAGTCTCCTCCCATCGTAAAGATTCCATTCTCGGTTTCTGTTCCCCAGGGGATCCGGCTACTCGATCTGTTCGCGGCTCGCCTACAGACATCAAAGAACCCAAACTCCAGTGGAGGAATGGCGTCTTCTCTGTCTTCGAGGCTGTCCCATCTAAAGGACTGAGAGGGTGGGACCTGGTCGACCTCCATGTCAGGGGTCTTTTTTCTCACCTGGATTCTCAACCAATACCGACTGGTTCCCTTGGAGTTTATTGATCAGGTAGTGATGGGCTATGGTGGCCTACGAGGGGCAGTAGCCTATGGCCTGGTGGTCTCGCTGGATGAGAAAAAGTACAAGGAGAAGAACATGATGATCAGCACCACCCTCCTAGTGGTGTACTTCACTGTCATGCTGCAGGGAATAACCATGAAACCACTGGTCAACTGGCTAAAAGTGAAGAGAGCTGCAGTGACAGAACGCACACTAGCTGAAAAAATACAGAATAGGGTAACTATTTAGTCGGAAGTCTTTGTTGTTCATCAACCCAAAAGAATCAGACAACAAACCTTACATCTCTCTAATAAATACCCAAAGTAAAGTGTTTACTTTTTGTAAACTGTACTACACCACCTTTTTATACACAAGGGGATGTCCTCGGGACAAGTCAATCACAGGTCTGTCAAATGAACGACAAGGTATATTAAGAGGAGAACACACAAATAAATTAGTAGCAGAGCAAGATTCATGCAGACTATTAAAGCACATTCGTGATGAAAAACTCTTTGTGAGAGAGAGCACACATGGTATAATATTCTTCTAGTATAATAACACACTGGTGGTAATTGGCATGTGAATGCACACTGCTTCTGAATTAAATAGCTCCCTCTTAAGAACAGCCAGCCCAGAAGGTCTCTAGGGAAGTGGTGACACAACATACAAACAAACATTTATATGACAAAGAAAATTGTACTAATCTGCCCACTAAGGCAACCCCAAATCATTTGCATGGATACCAGATCATTTGCCAGGGCAGACTACACAGAAAAACCTCAAATCTACCGGGACACAAACTAACTCAACAGTAAGAATAGCACGCGCTCCAAAAACtctgaaaaataaaaacataattatAACCCTGGCTCATTTACACAATAGCAGTAtcaaacattttatattttagtagccctttcctgcagtcaaatgacctagtcgcctcatgggtggaatgtgatttaatatttttcataatttcattaaTAAACATTTTTGTAATATTGCAGTCTTTTGTGATGTATATTATCAAGTTTAATATTGGGATGTAAACTCAAAATTGAAAACATTTAaactttttttaagcccataaccatgtgtatgaAGTGTATACTTTGGTTTCAAAGTAATTTGTTTTAGAAACactctgtgaccctgatttagcccactgcagtaaaaggtgaaataaacaacatCATTAAATAGACTTGATTCACATTAATGTTAAAAGTGAATACCATTCAAATGAATGAGCTATACCTGTCTCCCAGCTCATACACTCACTACCGTCTTCCAAGCCACTTCTCCAAATTAGGAAAAATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765785 lncRNA downstream 1723 35173288 ~ 35173583 (-) True G1543001
TU1765784 lncRNA downstream 9526 35165543 ~ 35165780 (-) True G1543000
TU1765783 lncRNA downstream 10155 35164923 ~ 35165151 (-) True G1542999
TU1765780 lncRNA downstream 20770 35154312 ~ 35154536 (-) True G1542996
TU1765777 lncRNA downstream 25751 35147641 ~ 35149555 (-) True G1542993
TU1765798 lncRNA upstream 11965 35191993 ~ 35192196 (-) True G1543013
TU1765867 lncRNA upstream 91291 35271319 ~ 35271564 (-) True G1543076
TU1765855 lncRNA upstream 99639 35279667 ~ 35280647 (-) True G1543064
TU1765854 lncRNA upstream 102495 35282523 ~ 35283024 (-) True G1543063
TU1765881 lncRNA upstream 126655 35306683 ~ 35306886 (-) True G1543081
XM_021571762.2 mRNA downstream 81489 35051395 ~ 35093817 (-) True ago3b
XM_021571761.2 mRNA downstream 81491 35051395 ~ 35093815 (-) False ago3b
XM_036951038.1 mRNA downstream 156885 35016978 ~ 35018421 (-) True LOC110496800
XM_021571760.2 mRNA downstream 159149 35012010 ~ 35016157 (-) True LOC110496079
XM_021571759.2 mRNA downstream 176067 34997472 ~ 34999239 (-) True LOC110496078
XR_002469509.2 mRNA upstream 167916 35347944 ~ 35351655 (-) False LOC110496085
XM_021571767.2 mRNA upstream 197771 35377799 ~ 35392845 (-) False si:ch73-347e22.4
XM_036952548.1 mRNA upstream 197771 35377799 ~ 35392845 (-) True si:ch73-347e22.4
XM_021571782.2 mRNA upstream 220698 35400726 ~ 35404746 (-) False LOC110496091
XM_021571784.2 mRNA upstream 220698 35400726 ~ 35405239 (-) False LOC110496091
TU1765772 other downstream 36752 35137637 ~ 35138554 (-) True G1542988
TU1765523 other downstream 435667 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 1012848 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 1501075 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 1564413 33602474 ~ 33610893 (-) False LOC110496048
TU1765900 other upstream 166867 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 272590 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 315294 35495322 ~ 35496982 (-) True LOC118941140
TU1766170 other upstream 830959 36010987 ~ 36012686 (-) True G1543346
TU1767721 other upstream 2121480 37301508 ~ 37302174 (-) True G1544806

Expression Profile