RNA id: XM_021571765.2


Basic Information

Item Value
RNA id XM_021571765.2
length 2455
RNA type mRNA
GC content 0.47
exon number 10
gene id tomm40l
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35335048 ~ 35348295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCACACGTTGTTCAGAAGTGGGCTCATTTGCCCAATCCAAGTGCCACCTCAAGTAAGTAGGCGGGTCTTAGCTATGACGCATGGCAGTTTGAGGTATTCTTACGTTACTGCCGGGTGTTGCATCGTCTTCTGGAAATCACAACAATGGGCAGTGTTTTGGCAGCCAGCTCCCCCAACCCGCCATTGGCTCCTGCTGGTGGTAGTCCTGGCGGCCCAGGGATGACGGTACCCCCAGGCTTCTCAATGCCCCCAGTATCACCTGTACTGCCTTCAGGCAATGCGGCACCCGGTCAGCAGGTGGAGGCAGAAGGCCCTCTGTCCAACCCTGGCACGTTTGAGGAGTGCCACCGCAAGTGCAAAGAGGTGTTCCCCATGCAGATGGAGGGTGTAAGACTAATCGTTAACAAGGGCCTGAGTAATCACTTCCAGGTGAATCACACAGTAATGCTCAGCACCCTAGGCGATTCCAGTTACAGGTTCGGTGCCACCTATGTGGGAACTAAGCAGATGGGTCCAGCAGAGTCCTTCCCAGTCATGGTGGGAGACATGGACAACAGCGGCAGCCTCAATGCCCAGGTCATTCATCAGATCTCCAACAGAGTCCGGTCCAAACTAGCCTTCCAGACGCAGCAGCAAAAGTTTGTGAACTGGCAAGGAGATTGTGAGGTCCGAGGAGAGGactttactgctgctgttacccTGGGCAACCCGGATGTCCTTGTAGGCTCTGGTATTATTGTAGCACACTACATCCAGTCCATAACCCCATCCCTGGCtttgggaggggagctggtttaCCATCGCAGGCCAGGAGAGGAAGGCACGGTCATGTCTCTAGCTGGCAGATACACAGGCAGTAACTTCATTGCCACATTGACATTAGGGGGAGCAGGGGCACATGCCTCCTACTACCACAAAGCCAACGACACGTTGCAGTTGGGTGTTGAGTTTGAGGCTAGCACCCGAATGCAGGAGACCAGTGTATCATTTGGCTACCAGCTAGATGTGCCTAAAGCCAATTTGCTCTTCAAAGGCTCCATAGATAGTAATTGGGTGGTGGGGGCCACACTAGAGAAGAAGCTACTTCCTCTGCCTCTTTCTTTGGTCCTGGGGTCCTTCCTCAACCACAAGAAGAACAAGTTCCAATGTGGTTTTGGCATCACCATCGGTTAGACTTACCAGAGTGGAGGAAAGCCTATAGGCAATCTTCACAGAAAGGACAGACCAAGCCTGGACTCAACACTGAGTCTCACATCACTTCAATTTGTCCCCATCTGACTACTAAGAAGTTCATTGTTGTTGGTTCCAAAGGTTAATTTTTCCTAAATAATGTGTtaaaatatacactatatatacagaagtatgtggacaccccttgaaattagtggattcggttatttcagccatacccgttgctgacaggtgtataaaatcgagcacacagccatgcaatctccatagacaaacattggcagtagaatggccttactgaagagcccaGTAACTTTTTCAATGTGGCACTGCCATAAGATACTACATTTACAACAAGGTCAGTTTGTCAcctttctgtcctgctagagctgttattgtaaagtggaaacgtctaggagcaacaatggctcagccatgaagtggtaaaccacacaagctcacagaactgccgagtgctgaagcgcgtataaattgtctgtcctcgtttgcaacacactctaagcaaagtcagcacaataactgtttgtcgggagcttcatgaatcccattgaacacctttgggatgaattggaacgccgactgcgagccaggcctaattgcccaacctcacctaatgctattgtggctgaatgctgtggggacttgcttccaatcaacatctagtggaaagccttcccagaactgtggaggctgttatagcgccaaggggggaccaactccatatcaatgcccatgattttggaatgagatgttcaacgagcaggtgtccacatacttttgaccatgtagtgtatataatcATTGAAAGGTTAAACAAAGATATGTAAATAAGGTGCATCTTTAGGACTAAAATAATCAATCGAATTATCAAAATTGGGGTTAAAATGAATGGGTCAGAGATTGAGGACAATGTGTTGATGAGATTGGACAATGGCCATATACTTCAGAGACTAACATATTGAGACCAACATAGCAGACAGCAGTAAAAGAGGACTCAGTAAAACACTTGCTGTTAGGAAACTATCAAATTATAGTACTTTTGTTTTTAGGTCTGTGCCGGTACAGTTTTGTTTTGGTcggtttgtttttatttattttgtgttgTATGGTCTATCTGCTTCTTTTCACTTGTTTGTTTTTTAGGTTGGGGAGGCAGAGGGCAGGAAAATCTTTTTCATAATCGTATAGATTACCTGTATATATCTATTGGGAAAAGGATAAATGCCATTTCTTACAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1764606 lncRNA upstream 7603 35325690 ~ 35327753 (+) True G1541982
TU1764649 lncRNA upstream 18524 35316632 ~ 35316832 (+) True G1542017
TU1764647 lncRNA upstream 25495 35309643 ~ 35309861 (+) True G1542015
TU1764611 lncRNA upstream 55060 35279209 ~ 35280296 (+) True G1541987
TU1764602 lncRNA upstream 89430 35244342 ~ 35245926 (+) True LOC110496082
TU1764664 lncRNA downstream 16543 35364838 ~ 35367546 (+) True G1542032
TU1764670 lncRNA downstream 24543 35372838 ~ 35373207 (+) True G1542036
TU1764674 lncRNA downstream 25576 35373871 ~ 35380006 (+) False G1542037
TU1764677 lncRNA downstream 25576 35373871 ~ 35375179 (+) False G1542037
TU1764680 lncRNA downstream 25576 35373871 ~ 35375149 (+) False G1542037
XM_036952544.1 mRNA upstream 10692 35244197 ~ 35324664 (+) False LOC110496082
NM_001160595.1 mRNA upstream 195522 35131761 ~ 35139834 (+) True olah
XR_005037436.1 mRNA upstream 349168 34959423 ~ 34986188 (+) True LOC110496075
XM_021571751.2 mRNA upstream 367461 34959423 ~ 34967895 (+) False LOC110496075
XR_005037450.1 mRNA downstream 64476 35412771 ~ 35427965 (+) False LOC118941149
XR_005037449.1 mRNA downstream 64476 35412771 ~ 35433941 (+) True LOC118941149
XR_005037437.1 mRNA downstream 92848 35441143 ~ 35504636 (+) False LOC118941148
XR_005037438.1 mRNA downstream 92848 35441143 ~ 35504636 (+) False LOC118941148
XR_005037439.1 mRNA downstream 92848 35441143 ~ 35504636 (+) False LOC118941148
TU1764613 other upstream 51650 35282603 ~ 35283706 (+) True G1541989
TU1764399 other upstream 436945 34883514 ~ 34898411 (+) False mbpa
TU1764400 other upstream 436945 34883514 ~ 34898411 (+) True mbpa
TU1763847 other upstream 1205697 34128341 ~ 34129659 (+) False LOC110496058
TU1763554 other upstream 1256282 34078718 ~ 34079074 (+) True G1540996
TU1764676 other downstream 26949 35375244 ~ 35386463 (+) False G1542037
TU1764671 other downstream 27085 35375380 ~ 35380006 (+) False G1542037
TU1764682 other downstream 27085 35375380 ~ 35386463 (+) True G1542037
TU1764735 other downstream 53542 35401837 ~ 35432356 (+) False G1542052
TU1764739 other downstream 59633 35407928 ~ 35425186 (+) False G1542052

Expression Profile