RNA id: TU1765900


Basic Information

Item Value
RNA id TU1765900
length 2153
RNA type TUCP
GC content 0.41
exon number 3
gene id LOC110496085
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35346895 ~ 35351655 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagttaaagttcatataaggaaatcagtcaattgaaataaattcacgAGGCtgtaatctatagatttcacatgactgggaacacatatgaatctgttagtcacagataccttaaataaaaaagtaggggcgtgggtcagaaatccagtcagtatctgatgtgaccatTTGCCTGTGGAATGAAGTCCCACTTCTTTTTAATCGCTTTGCGaatttgctggatattggcgggaactgtaacacgctgtcgtacaccttgatccagagcatcccaaacatgctcaatgggtgatatgtctggtgggtatgcaggccatggaagaactgggacattttcagcttccgggaaatgtgtacagatccttgagacatggggccatgcataaTCACGCTGAAACATGGTGTTGGCGGAAGATGAATGGcccgacaatgggcctcaggatctcatcacggtatctctgtgcattcaaattgccagcgataaaatgcaattatgttcgttgtccgcagcttatggtagtgATATTAACAGGAAatgctctagtggacattcctgctgtcagcatgcctactcaaaacttgagacatctgtggcattatgttgtgacaaaactgcacattttagagtggccttttagtgtccccagcacaaggtgagcctgtgtaatgatcatgttgtttaaccagcttcttgatataccacaactgtcaggtggatggattattttggtaaagaagaaatgctcaccaacagggatgtaaacaaatttgtgcacaaattgagagaaataagtttttttgtgcatatggaacatttcagggatcttttatatcagctcatgaaatatgggaccaacactttccatgttgcgcctatatttttgttcagtgtaaatgtaTGTACCACTATTGTTTCACATGATCAGTtattggactcaccatctcctgaCCAATATCTACATGTGACTCAGGACTATATTACAGAAGATGTGCAGGATTCTATCATCAATAGAATAATCACATCTACTGTTGCCCTCTTGAAAAGGGTCTCAATTTCTTCAAGCAAACTTTCCTACATATCAGCATATTTGTCAGTATTATCATGTGTGATTTATATAAATTAAACTCATGAGCAGCATTCAGCTTATTCTCATCTTTTTAAAACAATTCAGGCTCTGTCAACTATGAGCAGAGAATTTGAAGCAATAAGAAACAAAACCAATTCTCTCTGTATTTTGTAAGAAATGGCATTTATCCTTTTCCCAATAGATATATACAGGTAATCTATACGATTATGAAAAAGATTTTCCTGCCCTCTGCCTCCCCAACCactagatgttgattggaagcaagtccccacagcattcagccacaatagcattaggtgaggttgggcaattaggcctggctcgcagtcggcgttccaattcatcccaaaggtgttcaatgggattcatgaagctcccgacaaacagttattgtgctgactttgcttagagtgtgttgcaaacgaggacagacaatttatacgcgcttcagcactcggcagttctgtgagcttgtgtggtttaccacttcatggctgagccattgttgctcctagacgtttccactttacaataacagctctagcaggacagaaaggTGACAAACTGACCTTGTTGTAAATGTAGTATCTTATGGCAGTGCCACATTGAAAAAGTTACtgggctcttcagtaaggccattctactgccaatgtttgtctatggagattgcatggctgtgtgctcgattttatacacctgtcagcaacgggtatggctgaaataaccgaatccactaatttcaaggggtgtccacatacttctgtatatatagtgtatattttaACACATTATTTAGGAAAAATTAACCTTTGGAACCAACAACAATGAACTTCTTAGTAGTCAGATGGGGACAAATTGAAGTGATGTGAGACTCAGTGTTGAGTCCAGGCTTGGTCTGTCCTTTCTGTGAAGATTGCCTATAGGCTTTCCTCCACTCTGGTAAGTCTAACCGATGGTGATGCCAAAACCACATTGGAACTTGTTCTTCTTGTGGTTGAGGAAGGACCCCAGGACCAAAGAAAGAGGCAGAGGAAGTAGCTTCTTCTCTAGTGTGGCCCCCACCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765886 lncRNA downstream 12593 35332272 ~ 35334302 (-) True G1543086
TU1765888 lncRNA downstream 16741 35327890 ~ 35330154 (-) True G1543088
TU1765887 lncRNA downstream 19105 35325842 ~ 35327790 (-) True G1543087
TU1765893 lncRNA downstream 25847 35320778 ~ 35321048 (-) True G1543093
TU1765892 lncRNA downstream 26411 35319807 ~ 35320484 (-) True G1543092
TU1765899 lncRNA upstream 24186 35373848 ~ 35375167 (-) True G1543097
TU1765898 lncRNA upstream 25769 35375431 ~ 35376793 (-) True G1543096
TU1765923 lncRNA upstream 46704 35396366 ~ 35396641 (-) True G1543118
TU1765927 lncRNA upstream 50592 35400254 ~ 35400492 (-) True G1543122
TU1765931 lncRNA upstream 51066 35400728 ~ 35408945 (-) False G1543124
XM_036951039.1 mRNA downstream 142911 35151351 ~ 35203984 (-) False LOC110496081
XM_021571762.2 mRNA downstream 253078 35051395 ~ 35093817 (-) True ago3b
XM_021571761.2 mRNA downstream 253080 35051395 ~ 35093815 (-) False ago3b
XM_036951038.1 mRNA downstream 328474 35016978 ~ 35018421 (-) True LOC110496800
XM_021571760.2 mRNA downstream 330738 35012010 ~ 35016157 (-) True LOC110496079
XM_021571767.2 mRNA upstream 28137 35377799 ~ 35392845 (-) False si:ch73-347e22.4
XM_036952548.1 mRNA upstream 28137 35377799 ~ 35392845 (-) True si:ch73-347e22.4
XM_021571782.2 mRNA upstream 51064 35400726 ~ 35404746 (-) False LOC110496091
XM_021571784.2 mRNA upstream 51064 35400726 ~ 35405239 (-) False LOC110496091
XM_036952596.1 mRNA upstream 51064 35400726 ~ 35407830 (-) True LOC110496091
TU1765778 other downstream 166867 35175306 ~ 35180028 (-) True LOC110496081
TU1765772 other downstream 208341 35137637 ~ 35138554 (-) True G1542988
TU1765523 other downstream 607256 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 1184437 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 1672664 33657641 ~ 33674231 (-) True LOC110496049
TU1765944 other upstream 102956 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 145660 35495322 ~ 35496982 (-) True LOC118941140
TU1766170 other upstream 661325 36010987 ~ 36012686 (-) True G1543346
TU1767721 other upstream 1951846 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 2572493 37922155 ~ 37923334 (-) True ppt1

Expression Profile