RNA id: XM_036952548.1


Basic Information

Item Value
RNA id XM_036952548.1
length 6705
RNA type mRNA
GC content 0.42
exon number 5
gene id si:ch73-347e22.4
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35377799 ~ 35392845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataataccaaagaagaagaagcccgTCGAAATGGACGTCTTTGACAGTGTTGCTACAATTTGTCTCGACTTCGTGATTTTGCTGTAATTCTGCAAATCAGAGACTTCAGGAGTTCACTGGTCTATCTAATGCAATAGCCAACCAAGGAGCAACCAGGATAACTGAAGGAGTCTGGATATGATCTGCAGTTGCAGATGAACTTATTGACCAAGTTCTCCTGGAAGCCTTTGACAACATGGAGGAAAGTTGGGACAGCATAGAGGAAGCAGGAGACTACAAAACAGATGCAGCTAGACATTTACCAAGCTGTTCATGTCAGCAAATCACTGAACACAAGGGAACAGAAGTGGGAGAAGAGATCCTGACTGACAAGACATATAAGAGCATGACAGCATTTAAGATTGCCAGTTGCAGGTGCAAAGTCACAGTGCATCTCAGGAAACGCCTTTACTGCCATCAAAGATTAAGACACAATCTGACACATTATACCTGACACCTAGAACGGTTAGGAAGAAAAATCCAAAGACGTGTaaggaaataaaaaaaacttCACCGAAAGTTGAGAAAGCACAGGTGCCATCTCTGGATCCTTCCCTTGGAGTGGAACATAGATGTCATGATGTGCCACATGTGGATCAAATGAGACAAGTGGAAGCAGTGATAGAGTCCGTAATTGAGGATCTCCACAAACCACTGAAACATGTGAGTCATAGAAAAAATATCAAAGAAAAGGCTAGCAATGTTCTTGCATTAACTCTGAATCCTTCACTTGGAGTGGAACATAGAACTCCTGATGTGCCACAAGTGGATCATATAAGACAAATGGAAGCAGTGATAGAGTCCGTGATGGAGGATCTCCACAAAAAAGACGCCAGTAATGTTGCTCCATTAAAACCAACCACCTTTTCTGCCTCGGATAACCTGTTGGAACAGCATAACCATAGTACATTACCTCAATCTTATTTTATGTCATCCGGAGAGACAAAATCAGGCTTGAAACATGCAATACCCAAAACGTCAACAAAAAATAAGTCAAAAACATTAATGAAAGACCAACTTACCTGCAAAAGCTATTCAAAAAATCCTAAGAAAGCAGCTATGCAAACTTCAGTTCCTACATCTGACACAATGCATGTGTCAACAGTTAAGAAGAATTCCAATATTTGTAAAGAAAGAAAAAGATCTTCACAAAAAGCTGAAAAAGCACAGGTGTCATCTCTGGATCCTTCCCTTGGAGTGGAACATAAAAGTCCTGAAATGGAtcaagggagagaagaggaagcaTTGATTGACTCAGTGAATGAGAATCTCCACAAACTGCTTAAACATAAGGATCATCAAAAAAAGTTACAAGAAGAGGCCAGCAATGTTTCTACATCAACTCTGGATCCATCCCTTGTAGTGGAACATAGATTTCCTGATCGAATAAGACAAGTGGAAGCAGTGATAGACTCCCTGATTGAGGATCTCCACAAACCACTTAAACCTAATGGACAACAAAAAAAGTTTAAAGAAGAGACCAGTAATATTTCTGCATTGGACCAAACAGAATTTCTCTCCTCGGATAACCTGTTCGAACAGCATAACCATTGTACGTTACCTCAATATTATTTTCTGACAAAATCAGGCTTGAAACATGCCAAACCCAAAATGTCAACAAAAATGAAGTCAAAAGCATGCAGTAAAGGGAAACTATTTAAAAATGCTAAGAAAGCTGCTGTAATAACTTCAGATCCTTCTATTGGAGCAGAAAATGGATGTCTTGAAATGCCTTCCCTCTTTACCCAAGCAGAGAAaggaggaaagggagatgtaaaaaacaataaatgtgtAGGAAAGCATGAAAAGGAAGCAGTGATATCAGTGACCGGTGATCATTTGGAAACAGCGGCCCACAAACCACATCAACGTAAGGGGCCAAGAAAGAAGGTAAAAGAAGAGGACAGCAGTGTTTCCAAACCAGAACAAGTAGAATCTACTACTTCAGATAGCCAGCTAAAACAGCATGACCACAATGATTCACAACAAGTTTCTTTGCTAGTATCGGCGGCAAAGACAGAATCAGGAATAGAGCATATCATGCCAGAAATGGAAATGACAAATAAGCCAAAAACATGCAGGAAAAGGAAAATACTGTCCAAGCAAAGCTCAAAGATCACTGAAACTCCAACCCCACCAAGTTCAAAACCATCTCTTGGAGTGGAATATAGATATTCTGAAATGGCTACCCCTTTCACACATGTGGACCAGGTTCAGAATATTCTTGATACTCCTAAAGGCTCCAAAGCGAGTAATGGAAATACTGGATCAAACCATCCAATATCCAATGTCAGACATTCCAGACGGACCTCCAAATCTAATTCACATATCACAACTGACTTGATGCAAGATCAAGCAATTTTATCAGTTCCATCACATCTCACTAATCAACCTACCAGTCCTGTATCAACAACCGTGTCCTCAACTGCAGCACAAGGACAGATTACTGAATTAGTGAGTTCTCTTTGTACAGATAAAAGGCCGCATAAAATAGGGAGGCCTCCTAAGAAGAAAAAGTCTCAGAGACCAAAAAGAACAGGTATTGATAAGAATATCACAGATGACGACAAAGTGTGTGTTAAATTCTTATCAGCATTTGTAAAAGAGGAACTAATTGAGGAAGAGAAAAGTCTAGAAAATAGGGGAAAAGAAAAGAACGGCAAAGGGAAGAAAGGCAAAATTCTCCAAACAGACAATGTGAAGGTGAAAGATGGCAATGCATTAGCAGATGACAAATTAGTTTTACAAGTCCCTATAGATGAAGCAGGGGACTCTATATCTATTGTGATAGACCCAATCAGTGCTGTAATTCCCAAACATAAAAAGGGTGGTCGTATTGCCAAGGGTAAAAGAGTGCAAAAAATTGCATCCACCCCCAACATCCCCAGTGACCAGCAATGCATGAATATGTCCCCAGAAGaaatgtctctgtgtctcagcAATATATCAGAAAAACACAGAAAACGAAAAGTTGACCGCAGCAGTGCTGATTTTGTTAATGCAGATATAAATGTTCTAAATCTTAAAGATCTTAGTGATAGATCTGAAATACCGGACTCATCCTTACTAGGGACTCAGAGGGTGAAGAACAAGGGTAAGATCAAATCCAAGGCAATTACAGAAGAACAGACAGTGGCCACATCAGTGGTAAAAGAGATGGTGTGGCTAGATTTACAGACCACCATAGCAGCACTGAAAAAGAAACGAGGTCGGCCATTCAAGAAAAGTACCGTGATGAGAATGGCAAAACAGCGGTCATGTGAACAGCAGAAGTCAAACACTAGCAGAAAACTTTCCGTGAACAAGACACAGAGCTGCAAATCAATGGGAACTTCTAAGGGAGGGAAAATGCACAAATTCAACCCAATGTCAACAACTTCAAGGAGGCACACTAGAGCATCCGTGGCAATGAAGAATGAAGACCTTGTTCTTAAACAACAGCAAGGCGACATATGGGAGATCACTGATGTGTCCAGCAACGTTTTCTTCCCAATTGTGACTAATTCCCGCAGTATTTCAGTGCAAGAAATCGAAACTTCGGAAACTATTTTCTCTGTTGATGCAGGGGCGACACAAGGAATCCAGCAAGTTGAGTCTACCCCATTATTAACAACCCCTCTCGCAAAATTACTTCATAAAGTGACTGGCGTGAAGAAGAGACGCAGGAGAAATAAAACTGGATGGGCTACAAAAGTGAAATCCAAACGACCTCTCTCCAAAGTGAACTGCGGCGGTACGCTTGATGTGTTTGTTCAGTCTTCCATTGACAACACTGGACTCTCATTCAACTCTAGCCTCTGTAATTCGTTAACAGAAAATGACACATTGGAAAGTGTTGAACAAGAGAAAGAATGTAGAGCGCATGTGAAAGCAGTAACGAACTACAATCGAGTTTGTGTGGAGAAGCAGATCAACTGTGGCGATCAGCCCCTAACAGCTTGTGCTAAATTGCAGCATTCAAGTGTACTCCTACACAATTTTAAGACAAGGAAACCTATGTCATGCCATTTCTGCAGTCGCTCATTCCGTCACATAACCGCATACACAATTCACAAGCGCATTCACACAGGTGAGAAGCCTTACAGTTGCCAGAAGTGCGGCAAGAGCTTTGCTCATCTCGCCAAACTCAAATCACACTCAAACATCCACAAACAACATGGGCCCATTCAATGCCCATGTTGCATCACTCAGTCTCCAAATAAAGATGACTTGATTGATCATTTCAAGATCCACATGAAGGGTACCAAGAGGTTCAGCTTGATTACTAAAACAAGAAGAGACAAAGAAATCCAGATTCACCCGTACACTGATTACATAGAGTCCCCAGTCACTCTTAACGGCAGGAAATTCCTTAGATGCTCCACttgtttaaaatattttttcagtAAGGCCACATTGAAGCTGCACCTACAAACACACAGTGGAGTGAGGCGTTTCACCTGCAAAGTCTGTGGCAAGATGTTTATCACGTTCTCAAGTTTCAATGCACATGAAAAAACACACTGGCCTGTTAAACCGTATGCTTGCTCTGTGTGTGGAAAAGGCTTTGTTCTGCTTAGGGAGCTCAAAACCCACTCTCATATGCACTCAGGAGAGATGCCTTTCTTCTGTAACCACTGTGGTCAGGCCTTTAGCGACTTCTCATCCTTGCGCACACATCAAGTCTCCAAAGTGTGTTTTGAGGCTAGAGATGAAGGAGATGGAAACAAGGTTGACATTGAGGGGTTCCTGGTGGAGCAAAGGGCTGATGGGCAGATTAATACCCCGATGTACTTTAAATGTCAGATTTGCAAACAACTTAATCGTCGCTGGTGTCAGTACATTCTTCATCTGCAAACGCACACTAATAACAAGCCAAACCTTTGTGAGATCTGTGGACAACGGTATGAGGTTCCTGAATTACGTGTTCATTGTAAAGTGTGCTGCAAAtcaagtggagaggagagggcatgCAATTCGTCCTTGTCAGAGGTCTGGCATGAACCCCAATCTCTGCAAAATCCGATGCATGTGACTGAAATTGATTTTCTGTACAATGATAATCAGGAAATGTTATCTACTGATGACCAACATCCTAAATGCAAGGAGCCTGAGCCCCTGCCACCTCTGGAAACTATGGAGGAGTATTCCTCTGATGTGCTTCCACAAAACCCCAAACCTGCTTGCCAGATCCCAGGTAATGGGTTAGAGATAAATCGACCTTCTCCCTCAAACGCCACGTGTGCAAGTTCTGCCATATTGTCCCCCTCTGTAATGAGTTGTAATTCAGTACGTGTGGTTCAACAGCCTTCAGGTTTTCACTCTCGTTTTCAGACCCATGCTCCTTGTGACAGATATCCCCGTGGACAATGTGGAAAATCCTTTAACCGGTGGAATAAGCTCTGGTTGCATCGGGGACGACACAGAGAAAAACGCTGTAGCTTCTCATGCACTCAGTGCAATTTAGAGTTTCGCTTCTTAGGCTCCTATAGGGAGCACATGCAGGAACATGCAGCGCAGAGACCCTATGTTTGTCCGTTATGTCCCAAAACCTATATCACGGAAGAAGACTTAAATACCCATCTGTGCGAAAATCACCAGCCGTGtgaaagcctgaaatgtgacacgTGTGAAAAGGGTTTCACCAGTTTCAGAAATTTGGAGAGACATCGTCTGTTACACAGAGCTGCTAGCTCGCACTATTGTCTCCCTTGCAAGCTCCCATTTCCTAGTTACCTAGCCTTAAAGAATCACTTGAAGGCTCACAAAGCCCGCCCTGTTATCCCTCTCCCTGAAGGGCCATTGGAACCACTTCGATTTCCCTATCACTGTAGAAAATGTAATGCAAGATTTACAACCACAGACTTGCTCCAAGCCCACCAGGTTTGCCATCTTATAGGGGGGAAGAAAACATATAGCAGTTCAGCAAATGTAGTTTCTGCTTCCCTGACCTCCAAGCTCTCAAACAAACCAAGAGCGAGAGTCACCCCTCTATCCCCTACGACAGTACCTAGTCTTCTTCTGTCAAAGAAAAGGAACATGTATAGGTATCCTCACCCTGATCGTCTCTATGTTGTCCCTAAAATATCCTCACAGCCACCGGTCATTGTTTCGGACACAGAAGAAGAGCCCCAAGAGATTCTAAACTTTAGCTTATCCTCAGTCCACGACTCGCCCTGTAACACTGTGTCCCTTGAACATGAAGGGCGAACCAGCCCTAGCAATAATTGTTGTGAGGCAAACAACTCGGATCTACCTCAGTGCTCATGCCCCTCATGTGTCCTTATTTATGAACCTACTCAATGTATGCCAAAAACAGACACCCCACACATGCCGACCCATGAACCACCATGTCCCTTGGATAACGGTCATCAGAATGTACCACCTCAAAGATGGAAAAAGTCTAAGGGTAATGATGATGCTTTCTTTAGAGCCTCAACAACATTTGTGATATCAAGGGGCAAAAAACAGCGGATTGGCTTTGAGTGTGCTGATTGTTGGGTAAGATTTAGTGACGTCTCAGAGCTACATGAGCATTACTTACATCATGCCAGGGGGGTGAAGTgaaaatcaataaaaaaaaattccaCTAATGGACATTtgcatcggaaagtattcagaccgatttactttttccaaattttgttacgttacagccttattctaaaatgtatttttgcaaatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765898 lncRNA downstream 1006 35375431 ~ 35376793 (-) True G1543096
TU1765899 lncRNA downstream 2632 35373848 ~ 35375167 (-) True G1543097
TU1765905 lncRNA downstream 17229 35340402 ~ 35360570 (-) True G1543103
TU1765886 lncRNA downstream 43497 35332272 ~ 35334302 (-) True G1543086
TU1765888 lncRNA downstream 47645 35327890 ~ 35330154 (-) True G1543088
TU1765923 lncRNA upstream 3521 35396366 ~ 35396641 (-) True G1543118
TU1765927 lncRNA upstream 7409 35400254 ~ 35400492 (-) True G1543122
TU1765931 lncRNA upstream 7883 35400728 ~ 35408945 (-) False G1543124
TU1765932 lncRNA upstream 7883 35400728 ~ 35408945 (-) False G1543124
TU1765933 lncRNA upstream 7883 35400728 ~ 35408945 (-) True G1543124
XR_002469509.2 mRNA downstream 26144 35347944 ~ 35351655 (-) False LOC110496085
XM_036951039.1 mRNA downstream 173815 35151351 ~ 35203984 (-) False LOC110496081
XM_021571762.2 mRNA downstream 283982 35051395 ~ 35093817 (-) True ago3b
XM_021571761.2 mRNA downstream 283984 35051395 ~ 35093815 (-) False ago3b
XM_036951038.1 mRNA downstream 359378 35016978 ~ 35018421 (-) True LOC110496800
XM_021571782.2 mRNA upstream 7881 35400726 ~ 35404746 (-) False LOC110496091
XM_021571784.2 mRNA upstream 7881 35400726 ~ 35405239 (-) False LOC110496091
XM_036952596.1 mRNA upstream 7881 35400726 ~ 35407830 (-) True LOC110496091
XM_036952553.1 mRNA upstream 15134 35407979 ~ 35411171 (-) False LOC118941136
XM_036952552.1 mRNA upstream 15134 35407979 ~ 35411690 (-) False LOC118941136
TU1765900 other downstream 28137 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 197771 35175306 ~ 35180028 (-) True LOC110496081
TU1765772 other downstream 239245 35137637 ~ 35138554 (-) True G1542988
TU1765523 other downstream 638160 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 1215341 34161927 ~ 34162458 (-) True G1541318
TU1765944 other upstream 59773 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 102477 35495322 ~ 35496982 (-) True LOC118941140
TU1766170 other upstream 618142 36010987 ~ 36012686 (-) True G1543346
TU1767721 other upstream 1908663 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 2529310 37922155 ~ 37923334 (-) True ppt1

Expression Profile