RNA id: XM_036952555.1


Basic Information

Item Value
RNA id XM_036952555.1
length 3017
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC118941136
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35407979 ~ 35415035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATAAGTAATACTGACGTCTGCAgagtctgactctcagccgagTTCCCCGACTCTACCCAGCGTTTATTGACAAGATTATTCCCGTCATTCTTAgtttagctaaatggtatagtcgttgtgcattctcaatggacatttgggtcttttcgtaaattcgctctggctatctacagtactctgatttcagagcactctcctcTGAGTGTAATGAATTTATGAGCGCTCAACCCCcattgaatatggctggtgtcagtaaacttCAGCAAAAGAGCgtaatttacagtcacagttacagtcaccaacgctctggaaaactgcctaaccagctctgctaggTGGGAAGCCCTAAGTAGTTCACAAGACCTCCTAGGAAGTGAGCTGGAAGGAAAGAAAGGAGCCAGGTTGCAAGAAAACAGATGAAAGAAGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACGGCGTCGGAAGAAGGGGAAGGGGCAACGGCGTCGGAAGAAGGGGAAGGGGCAACTGTGTCGGAAGAAGGGGCAACGGCTTCGGAAGAAGGGGCAATTGCGTCGAAAGAAGGGGCAATGGATGCCACTGGTAGTGAAGAGGAGTCCGATGCCTTGTCTAATGGCAGCCCCATACCACCTAAGAGGGGAAGGGGTAGGCCCAAAGGATCAGGCTCCAAGAAACCTAAGATACTGAGGGTACTAGACAAGCAGCCACGGGGCAGGCCACGTAAAGTGGTTGACCCTAATGCTGTTTCAGCAGAGCGTGGCCGGCCCAAAAAagttcagcaaaaaaaaaaattgggtagGCCGAGGAAGTACCTGTCacccgaggaggaagaggagagaaagataatGGAAAGCCAACCTAGAGTGTGGAAGCCGCTCGGAAGGCCGCGCATCCATCCCCGCAGGGATCCCCCCGCCACACCCACCTCTGCCGAGCCACGGAGAAGAGGCCGTCCACTCAAGGCATCAACAGATAGAGGTGCCAACTTACAGACGAACCCACCTCCAACTTCTAAAGTTTCAAAGCCCCCCGCTAAAGATGATTCCCCGCGAAAGAGTGGCCGCCCCTTAGGCTCCTTCAAAGCCAAGAGAGCAGCAGAGACGGATAGGTCCAACAGTTCACCCTCAGCCAAACAGGGTTGCACTGTTTCTCCAATAGTAAGGCTTTACCGCTGCTCCAACGGTAAAGCAAATGTGTTCGATGAAGCTGCCTTCCAAGCCCAGAGGCAAAAAGGCAAGAGAAAGTCTGTGAACGCTGATTATACAGCGTATGATTCAGAGGAGGAAAATGAAGATACACAGAGAAATGAGGATGAAGTCTTTTCTCTAGTAGAAGATGACAAAGAAGAGGAAATTAAACCACGCGATGGTCATGGCAAGGCTAGTAAACCTGGTAAGGTAGTGGCAGCTATTAAGAAAAAAGAAGTGGTTGTTCCTAAGAGGGGGGGCAGAAAGCCTGGCTCAATCAAAAAGGTTGTAAAGTAAAAGGAACCTGGGCGGAGCAGACTGAACGAGTATCAGTAGCATCTTGTAAGatgtttttttaacattttattatcTCTTACCCAGCTCTTTCTTGCTTTCTCAACTAACCTATGTGTCTGTTTGCTCTTGCTGTTATTTTTTATGGTTTGATGCCTTCGTGGAAACCTTGTGGAAAAGAAAAGTACTTTTTGTACTTCCTTGGTCATCTATAGCTTGAATGATGTGAAGACAATTTCATTGACAGTTGTTAATCTTGTATTATTCTGTTCAGACTTATCCCATTTAGATTTTTTCACTGGTACTGTCATTGATACAGTTTCTAATTCCATACACATCCTATAGTTGATGATATTCTCATTGAGGTTTGTTAATCTTGTATTGGTCTGTGCAGATTTGTCCAAATAAGCTCAAATGGTTTAAATCAATTGAATTAGttaagtattttgttttttgttttttatctcTCCGTAAGCTCTGTAGTTTTCGAATTGCTAATGTCTTCTAATTTTATTTGCCTGAATTGCCAAAGCTTTGAATGTAACAACTTCCCCGTCCCAGCTATCTTTGTTTCGATATAGATGTTGTTAGTATCACTATCATGGCACCCTTttacctataaagtgcactacttttgaccaaagccccatggaccctggtcaaaagtaatgcactataaggggaatatggtgccatttgggactgtaCCATAATCATAGTTGTTTTCTTTCACTTGGTTCATTGCATACTTCACCTTGTGGAGTCAAGACGGTACCTGTAAACTTCCAATCCATCATCCTTAAGATTTCTCTTAGAAGATGTATGGTTATTCACTATTGTGATGGTTTTGTTTGCCAGTATCATCCTTGTAATTCACTCAACATCACTCCTCACAGTTCTTTTTAAGACTTTTTATGTCAGCTCTTTTTACTTGTTTTTTATCACTTGGCTTTCATCTGAAGTGGATGGCTTGGTTTCACAGACTCTGGGTGATGTTGTGTGTAAATGTTCAGATTGTATGTTAAACATGTCTTCATCTAGTCtggtatttgtttatttaattaagTATGTGCTGGACCATGATATCAACAGTTCATATTGCATTGCAACATCGTAAATTCTGTAATATAAAAATAGTAATTGAGGTACACAACAGAATCTATCATTTGTATGAATTCATGTTCCTGTGACCAAAGCTTGTTAGTTTCATGTTTTCAACTTGGTCTCTCAACTTGGTCTGTTGCTTGGATTAATACAATGTTCTTCAAGATGCAGTTAGAACTATAGAGATACATACCGTAAGTTTTACCtatgtatttatctctgtgatcAGAAACAGGTCTGTGAAACCTCCCCAACGTTCATTTGAGGGTAATgtgaatttctgtttttttagaGAGAGCAAATATTTAGAAAGTTTCATGTAATAAAGTGAAATGTCAAACTTTGtttttgatgtttttttaatCTCAATAAAACCTCAAATATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765927 lncRNA downstream 7487 35400254 ~ 35400492 (-) True G1543122
TU1765923 lncRNA downstream 11338 35396366 ~ 35396641 (-) True G1543118
TU1765898 lncRNA downstream 31186 35375431 ~ 35376793 (-) True G1543096
TU1765899 lncRNA downstream 32812 35373848 ~ 35375167 (-) True G1543097
TU1765905 lncRNA downstream 47409 35340402 ~ 35360570 (-) True G1543103
TU1765971 lncRNA upstream 7297 35422332 ~ 35472010 (-) True G1543155
TU1765977 lncRNA upstream 62712 35477747 ~ 35485186 (-) True G1543161
TU1765938 lncRNA upstream 63800 35478835 ~ 35502036 (-) False G1543125
TU1765979 lncRNA upstream 68972 35484007 ~ 35491478 (-) True G1543163
TU1765940 lncRNA upstream 70571 35485606 ~ 35502036 (-) False G1543125
XM_036952596.1 mRNA downstream 149 35400726 ~ 35407830 (-) True LOC110496091
XM_021571784.2 mRNA downstream 2740 35400726 ~ 35405239 (-) False LOC110496091
XM_021571782.2 mRNA downstream 3233 35400726 ~ 35404746 (-) False LOC110496091
XM_021571767.2 mRNA downstream 15134 35377799 ~ 35392845 (-) False si:ch73-347e22.4
XM_036952570.1 mRNA upstream 153 35415188 ~ 35419242 (-) False LOC118941138
XM_036952575.1 mRNA upstream 153 35415188 ~ 35419242 (-) False LOC118941138
XM_036952574.1 mRNA upstream 153 35415188 ~ 35419243 (-) False LOC118941138
XM_036952572.1 mRNA upstream 153 35415188 ~ 35419244 (-) False LOC118941138
XM_036952573.1 mRNA upstream 153 35415188 ~ 35419244 (-) False LOC118941138
TU1765900 other downstream 58317 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 227951 35175306 ~ 35180028 (-) True LOC110496081
TU1765772 other downstream 269425 35137637 ~ 35138554 (-) True G1542988
TU1765523 other downstream 668340 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 1245521 34161927 ~ 34162458 (-) True G1541318
TU1765944 other upstream 37583 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 80287 35495322 ~ 35496982 (-) True LOC118941140
TU1766170 other upstream 595952 36010987 ~ 36012686 (-) True G1543346
TU1767721 other upstream 1886473 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 2507120 37922155 ~ 37923334 (-) True ppt1

Expression Profile