RNA id: XR_005037450.1


Basic Information

Item Value
RNA id XR_005037450.1
length 1715
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC118941149
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35412771 ~ 35433941 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTAAATGCCCTAAGTGGGTGGGTCGCAAACAGGTGTCACTGGCGTGAAAAGCAAGCCCCCCACGCATCACGCCAATAGGGTTAACCCACTTGGTGGGAATTGCAAGGTGGCTCATTAGGGAGGATCACTACAGTATAGCTGAGAACTTTTACAGCTTCTGTATAAAATAATATGGCATAgtgaaaatatacagtatatcaagcACTACTTTTGTTATTTTCGCACAACTTGATTTGCTACCCCTTTATTTTCGCTACCTCTATATTTTGTTCTCATGTCTCCATAGACAGGAAAAAGATTGATGTATGGAGATTAAGGGAGATAAGAGtctgtctcctcAGCAAATGGCACAATCAATATCAACTGTCCCAGGATGCACCACCACTAGCAGAGGGCCAGGAAAACCACCAAGCTCCCTGCAAGGCTGAATAATGTAAGCCTGGGAAAACGCTTGGGCTTCTTCTGGATGATCTGGACATGCTACAACACCAAAAGATgaattaccgccaccaactggacgaCGTTGAAAAAAACAAGtctgtctcctcAGCAAATGGCACAATCAATATCAACTGTCCCAGGATGCACCACCACTAGCAGAGGGCCAGGAAAACCACCAAGCTCCCTGCAAGGCTGAATAATGTAAGCCTGGGAAAACGCTTGGGCTTCTTCTGGATGATCTGGACATGCTACAACACCAAAAGATgaattaccgccaccaactggacgaCGTTGAAAAAAACAAGGTAAAAATAAAACATGATAGGGAAAACAAATCCacccaaaataaaacaataaaaaccaCATTGACAAAACCAAAACCCCCAAACACCCACTTCTTCTATCCTTCAAATCCCCATATCTCCCTTCTTCTGActatcctagttaaataaaggttaaataatgtaTTCATGTTTAATTCTCACCTGAGAGGCTTGTGACAATACTCCATGCAACTCCTCTGCCAAGAAGTCTTTCAGTCCCAGGAAACATTCCGTCGCATCCACAACAATGTCTATTTTCCAGGACttcctctccaccttggcagtgccattAATCACcatagctataaaggccacaaagtccaccttctgtACCTTTAACATATCTGGGTTCTGCCATTGAACGGTAACCCCTGCAGCCTTCAGTGAATGCCTATCCACCACCATGGACTACTCAGGAGCAGCATTTGAACCCTCAACCCTTTTAAATGCCCTAAGTGGGTGGGTCGCGAACAGGTGTCACTGGCGTGAAAAGCAAGCCCCCCACGCATCACGCCAATAGGGTTAACCCACTTGGTGGGAATTGCAAGGTGGCTCATTAGGGAGGATCACTACAGTATAGCTGAGAACTTTTACAGCTTCTGTATAAAATAATATGGCATAgtgaaaatatacagtatatcaaccACTACTTTTGTTATTTTCGCACAACTTGATTTGCTACCCCTTTATTTTCGCTACCTCTATATTTTGTTCTCATGTCTCCATAGACAGGAAAAACATTGATGTATGGAGATTAAGGGAGATAAGAGCAAATGGCACAATCAATATCAACTGTCCCAGGATGCACCACCACTAGCAGAGGGCCAGGAAAACCACCAAGCTCCCTGCAAGGCTGAATAATGTAAGGTGACTGAAATATTCTGCTTTTATAAAATGTTATGCTTTTTTGAAATGAAACAAAATACCTTGCTCTCTTTAAAGATTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1764726 lncRNA upstream 3695 35400723 ~ 35409076 (+) False G1542052
TU1764723 lncRNA upstream 3791 35400723 ~ 35408980 (+) False G1542052
TU1764693 lncRNA upstream 15773 35396381 ~ 35396998 (+) True G1542047
TU1764690 lncRNA upstream 18392 35394126 ~ 35394379 (+) True G1542044
TU1764689 lncRNA upstream 19592 35392954 ~ 35393179 (+) True G1542043
TU1764777 lncRNA downstream 72 35428037 ~ 35435399 (+) True G1542071
TU1764763 lncRNA downstream 3066 35431031 ~ 35438214 (+) False G1542057
TU1764762 lncRNA downstream 9645 35437610 ~ 35444970 (+) True G1542057
TU1764784 lncRNA downstream 56042 35484007 ~ 35491707 (+) True LOC118941148
TU1764713 lncRNA downstream 57861 35485826 ~ 35500577 (+) False G1542051
XM_036952546.1 mRNA upstream 64476 35335048 ~ 35348295 (+) False tomm40l
XM_021571765.2 mRNA upstream 64476 35335356 ~ 35348295 (+) False tomm40l
XM_021571766.2 mRNA upstream 64476 35335507 ~ 35348295 (+) False tomm40l
XM_036952545.1 mRNA upstream 64476 35335507 ~ 35348295 (+) True tomm40l
XM_036952544.1 mRNA upstream 88107 35244197 ~ 35324664 (+) False LOC110496082
XR_005037437.1 mRNA downstream 13178 35441143 ~ 35504636 (+) False LOC118941148
XR_005037438.1 mRNA downstream 13178 35441143 ~ 35504636 (+) False LOC118941148
XR_005037439.1 mRNA downstream 13178 35441143 ~ 35504636 (+) False LOC118941148
XR_005037440.1 mRNA downstream 13178 35441143 ~ 35504636 (+) False LOC118941148
XR_005037441.1 mRNA downstream 13178 35441143 ~ 35504636 (+) False LOC118941148
TU1764676 other upstream 26308 35375244 ~ 35386463 (+) False G1542037
TU1764682 other upstream 26308 35375380 ~ 35386463 (+) True G1542037
TU1764671 other upstream 32765 35375380 ~ 35380006 (+) False G1542037
TU1764613 other upstream 129065 35282603 ~ 35283706 (+) True G1541989
TU1764399 other upstream 514360 34883514 ~ 34898411 (+) False mbpa
TU1764728 other downstream 24705 35452670 ~ 35481348 (+) True G1542052
TU1764702 other downstream 50870 35478835 ~ 35502933 (+) False G1542051
TU1764711 other downstream 65630 35493595 ~ 35502933 (+) True G1542051
TU1764796 other downstream 101578 35529543 ~ 35545979 (+) False G1542090
TU1764994 other downstream 407871 35835836 ~ 35836617 (+) True G1542253

Expression Profile