RNA id: XM_036952597.1


Basic Information

Item Value
RNA id XM_036952597.1
length 2764
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110496802
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35422374 ~ 35427024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctatgGTGATTaatggcactgccaaggtggagaggaaGTCCTGGAAAATAGACATTGTTGTGGATGCGACGGAATGTTTCCTGGGACTGAAAGACTTCTTGGCAGAGGAGTTGCATGGAGTATTGTCACAAGCCTCTCAGTGGGAAGCCCTAAGTAGTTCACAAGACCTCCTAGGAAGTGAGCTGGAAGGAAAGAAAGGAGCCAGGTTGCAAGAAAACAGATGAAAGAAGGGGCAACAATGTCGGAAGAAGGGGCAACAATGTCGGAAGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACGGCTTCGGAAGAAGGGGCAATTGCGTCGAAAGAAGGGGCAATGGATGCCACTGGTAGTGAAGAGGAGTCCGATGCCTTGTCTAATGGCAGCCCCATACCACCTAAGAGGGGAAGGGGTAGGCCCAAAGGATCAGGCTCCAAGAAACCTAAGATACTGAGGGTACTAGACAAGCAGCCACGGGGCAGGCCACGTAAAGTGGTTGACCCTAATGCTGTTTCAGCAGAGCGTGGCCGGCCCAAAAAagttcagcaaaaaaaaaaattgggtagGCCGAGGAAGTACCTGTCacccgaggaggaagaggagagaaagatactGAAAAGCCAACCTAGAGTGTGGAAGCCGCTCGGAAGGCCGCGCATCCATCCCCGCAGGGATCCCCCCGCCACACCCACCTCTGCCGAGCCACGGAGAAGAGGCCGTCCACTCAAGGCATCAACAGATAGAGGTGCCAACTTACAGACGAACCCACCTCCAACTTCTAAAGTTTCAAAGCCTCCCGCTAAAGATGATTCCCCGCGAAAGAGTGGCCGCCCCTTAGGCTCCTTCAAAGCCAAGAGAGCAGCAGAGACGGATAGGTCCAACAGTTCACCCTCAGCCAAACAGGGTTGCACTGTTTCTCCAATAGTAAGGCTTTACCGCCGCTCCAACGGTAAAGCAAATGTGTTCGATGAAGCTGCCTTCCAAGCCCAGAGGCAAAAAGGCAAGAGAAAGTCTGTGAACGCTGATTATACAGCGTATGATTCAGAGGAGGAAAATGAAGATACACAGAGAAATGAGGATGAAGTCTTTTCTCTAGTAGAAGATGACAAAGAAGAGGAAATTAAACCACGCGATGGTCATGGCAAGGCTAGTAAACCTGGTAAGGTAGTGGCAGCTATTAAGAAAAAAGAAGTGGTTGTTCCTAAGAGGGGGGGCAGAAAGCCTGGCTCAATCAAAAAGGTTGTAAAGTAAAAGGAACCTGGGCGGACAGACTGAACGAGTATCAGTAGCATCTTGTAAGatgtttttttaacattttattatcTCTTACCCAGCTCTTTCTTGCTTTCTCAACTAACCTATGTGTCTGTTTGCTCTTGCTGTTATTTTTTATGGTTTGATGCCTTCGTGGAAACCTTGTGGAAAAGAAAAGTACTTTTTGTACTTCCTTGGTCATCTATAGCTTGAATGATGTGAAGACAATTTCATTGACAGTTGTTAATCTTGTATTATTCTGTTCAGACTTATCCCATTTAGATTTTTTCACTGGTACTGTCATTGATACAGTTTCTAATTCCATACACATCCTATAGTTGATGATATTCTCATTGAGGTTTGTTAATCTTGTATTGGTCTGTGCAGATTTGTCCAAATAAGCTCAAATGGTTTAAATCAATTGAATTAGttaagtattttgttttttgttttttatctcTCCGTAAGCTCTGTAGTTTTCGAATTGCTAATGTCTTCTAATTTTATTTGCCTGAATTGCCAAAGCTTTGAATGTAACAACTTCCCCGTCCCAGCTATCTTTGTTTCGATATAGATGTTGTTAGTATCACTATCATGGCACCCTTttacctataaagtgcactacttttgaccaaagccccatggaccctggtcaaaagtaatgcactataaggggaatatggtgccatttgggactgtaCCATAATCATAGTTGTTTTCTTTCACTTGGTTCATTGCATACTTCACCTTGTGGAGTCAAGACGGTACCTGTAAACTTCCAATCCATCATCCTTAAGATTTCTCTTAGAAGATGTATGGTTATTCACTATTGTGATGGTTTTGTTTGCCAGTATCATCCTTGTAATTCACTCAACATCACTCCTCACAGTTCTTTTTAAGACTTTTTATGTCAGCTCTTTTTACTTGTTTTTTATCACTTGGCTTTCATCTGAAGTGGATGGCTTGGTTTCACAGACTCTGGGTGATGTTGTGTGTAAATGTTCAGATTGTATGTTAAACATGTCTTCATCTAGTCtggtatttgtttatttaattaagTATGTGCTGGACCATGATATCAACAGTTCATATTGCATTACAACTTCGTAAATTCTGTAATATAAAAATAGTAATTGAGGTACACAACAGAATCTATAATTTGTATGAATTCATGTTCCTGTGACCAAAGCTTGTTAGTTTCATGTTTTCAACTTGGTCTCTCAACTTGGTCTGTTGCTTGGATTAATACAATGTTCTTCAAGATGCAGTTAGAACTATAGAGATACATACCGTAAGTTTTACCtatgtatttatctctgtgatcAGAAACAGGTCTGTGAAACCTCCCCAACGTTCATTTGAGGGTAATgtgaatttctgtttttttagaGAGAGCAAATATTTAGAAAGTTTCATGTAATAAAGTGAAATGTCAAACTTTGtttttgatgtttttttaatCTCAATAAAACCTCAAATATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765931 lncRNA downstream 13429 35400728 ~ 35408945 (-) False G1543124
TU1765932 lncRNA downstream 13429 35400728 ~ 35408945 (-) False G1543124
TU1765933 lncRNA downstream 13429 35400728 ~ 35408945 (-) True G1543124
TU1765927 lncRNA downstream 21882 35400254 ~ 35400492 (-) True G1543122
TU1765923 lncRNA downstream 25733 35396366 ~ 35396641 (-) True G1543118
TU1765977 lncRNA upstream 50723 35477747 ~ 35485186 (-) True G1543161
TU1765938 lncRNA upstream 51811 35478835 ~ 35502036 (-) False G1543125
TU1765979 lncRNA upstream 56983 35484007 ~ 35491478 (-) True G1543163
TU1765940 lncRNA upstream 58582 35485606 ~ 35502036 (-) False G1543125
TU1765949 lncRNA upstream 65974 35492998 ~ 35500613 (-) True G1543133
XM_036952571.1 mRNA downstream 2473 35415188 ~ 35419901 (-) True LOC118941138
XM_036952572.1 mRNA downstream 3130 35415188 ~ 35419244 (-) False LOC118941138
XM_036952573.1 mRNA downstream 3130 35415188 ~ 35419244 (-) False LOC118941138
XM_036952574.1 mRNA downstream 3131 35415188 ~ 35419243 (-) False LOC118941138
XM_036952570.1 mRNA downstream 3132 35415188 ~ 35419242 (-) False LOC118941138
XM_036952564.1 mRNA upstream 2547 35429571 ~ 35432610 (-) False LOC118941137
XM_036952562.1 mRNA upstream 2547 35429571 ~ 35433205 (-) False LOC118941137
XM_036952563.1 mRNA upstream 2547 35429571 ~ 35433400 (-) False LOC118941137
XM_036952560.1 mRNA upstream 2547 35429571 ~ 35434330 (-) False LOC118941137
XM_036952565.1 mRNA upstream 2547 35429571 ~ 35436003 (-) False LOC118941137
TU1765900 other downstream 72712 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 242346 35175306 ~ 35180028 (-) True LOC110496081
TU1765772 other downstream 283820 35137637 ~ 35138554 (-) True G1542988
TU1765523 other downstream 682735 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 1259916 34161927 ~ 34162458 (-) True G1541318
TU1765944 other upstream 25594 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 68298 35495322 ~ 35496982 (-) True LOC118941140
TU1766170 other upstream 583963 36010987 ~ 36012686 (-) True G1543346
TU1767721 other upstream 1874484 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 2495131 37922155 ~ 37923334 (-) True ppt1

Expression Profile