RNA id: XM_036952616.1


Basic Information

Item Value
RNA id XM_036952616.1
length 2629
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC118941146
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35443262 ~ 35446995 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTGCTTGAGATCCGGGGCTGTCTGGGAAGCCCTAAGTAGTTCACAAGACCTCCTAGGAAGTGAGCTGGAAGGAAAGAAAGGAGCCAGGTTGCAAGAAAACAGATGAAAGAAGGGGCAACAATGTCGGAAGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACGGCTTCGAAAGAAGGGGCAATGGATGCCACTGGTAGTGAAGAGGAGTCCGATGCCTTGTCTAATGGCAGCCCCATACCACCTAAGAGGGGAAGGGGTAGGCCCAAAGGATCAGGCTCCAAGAAACCTAAGATACTGAGGGTACTAGACAAGCAGCCACGGGGCAGGCCACGTAAAGTGGTTGACCCTAATGCTGTTTCAGCAGAGCGTGGCCGGCCCAAAAAagttcagcaaaaaaaaaaattgggtagGCCGAGGAAGTACCTGTCacccgaggaggaagaggagagaaagatactGAAAAGCCAACCTAGAGTGTGGAAGCCGCTCGGAAGGCCGCGCATCCATCCCCGCAGGGATCCCCCCGCCACACCCACCTCTGCCGAGCCACGGAGAAGAGGCCGTCCACTCAAGGCATCAACAGATAGAGGTGCCAACTTACAGACGAACCCACCTCCAACTTCTAAAGTTTCAAAGCCCCCCGCTAAAGATGATTCCCCGCGAAAGAGTGGCCGCCCCTTAGGCTCCTTCAAAGCCAAGAGAGCAGCAGAGACGGATAGGTCCAACAGTTCACCCTCAGCCAAACAGGGTTGCACTGTTTCTCCAATAGTAAGGCTTTACCGCCGCTCCAACGGTAAAGCAAATGTGTTCGATGAAGCTGCCTTCCAAGCCCAGAGGCAAAAAGGCAAGAGAAAGTCTGTGAACGCTGATTATACAGCGTATGATTCAGAGGAGGAAAATGAAGATACACAGAGAAATGAGGATGAAGTCTTTTCTCTAGTAGAAGATGACAAAGAAGAGGAAATTAAACCACGCAATGGTCATGGCAAGGCTAGTAAACCTGGTAAGGTAGTGGCAGCTATTAAGAAAAAAGAAGTGGTTGTTCCTAAGAGGGGGGGCAGAAAGCCTGGCTCAATCAAAAAGGTTGTAAAGTAAAAGGAACCTGGGCGGAGCAGACTGAACGAGTATCAGTAGCATCTTGTAAGatgtttttttaacattttattatcTCTTACCCAGCTCTTTCTTGCTTTCTCAACTAACCTATGTGTCTGTTTGCTCTTGCTGTTATTTTTTATGGTTTGATGCCTTCGTGGAAACCTTGTGGAAAAGAAAAGTACTTTTTGTACTTCCTTGGTCATCTATAGCTTGAATGATGTGAAGACAATTTCATTGACAGTTGTTAATCTTGTATTATTCTGTTCAGACTTATCCCATTTAGATTTTTTCACTGGTACTGTCATTGATACAGTTTCTAATTCCATACACATCCTATAGTTGATGATATTCTCATTGAGGTTTGTTAATCTTGTATTGGTCTGTGCAGATTTGTCCAAATAAGCTCAAATGGTTTAAATCAATTGAATTAGttaagtattttgttttttgttttttatctcTCCGTAAGCTCTGTAGTTTTCGAATTGCTAATGTCTTCTAATTTTATTTGCCTGAATTGCCAAAGCTTTGAATGTAACAACTTCCCCGTCCCAGCTATCTTTGTTTCGATATAGATGTTGTTAGTATCACTATCATGGCACCCTTttacctataaagtgcactacttttgaccaaagccccatggaccctggtcaaaagtaatgcactataaggggaatatggtgccatttgggactgtaCCATAATCATAGTTGTTTTCTTTCACTTGGTTCATTGCATACTTCACCTTGTGGAGTCAAGACGGTACCTGTAAACTTCCAATCCATCATCCTTAAGATTTCTCTTAGAAGATGTATGGTTATTCACTATTGTGATGGTTTTGTTTGCCAGTATCATCCTTGTAATTCACTCAACATCACTCCTCACAGTTCTTTTTAAGACTTTTTATGTCAGCTCTTTTTACTTGTTTTTTATCACTTGGCTTTCATCTGAAGTGGATGGCTTGGTTTCACAGACTCTGGGTGATGTTGTGTGTAAATGTTCAGATTGTATGTTAAACATGTCTTCATCTAGTCtggtatttgtttatttaattaagTATGTGCTGGACCATGATATCAACAGTTCATATTGCATTACAACTTCGTAAATTCTGTAATATAAAAATAGTAATTGAGGTACACAACAGAATCTATAATTTGTATGAATTCATGTTCCTGTGACCAAAGCTTGTTAGTTTCATGTTTTCAACTTGGTCTCTCAACTTGGTCTGTTGCTTGGATTAATACAATGTTCTTCAAGATGCAGTTAGAACTATAGAGATACATACCGTAAGTTTTACCtatgtatttatctctgtgatcAGAAACAGGTCTGTGAAACCTCCCCAACGTTCATTTGAGGGTAATgtgaatttctgtttttttagaGAGAGCAAATATTTAGAAAGTTTCATGTAATAAAGTGAAATGTCAAACTTTGtttttgatgtttttttaatCTCAATAAAACCTCAAATATGACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765931 lncRNA downstream 34317 35400728 ~ 35408945 (-) False G1543124
TU1765932 lncRNA downstream 34317 35400728 ~ 35408945 (-) False G1543124
TU1765933 lncRNA downstream 34317 35400728 ~ 35408945 (-) True G1543124
TU1765927 lncRNA downstream 42770 35400254 ~ 35400492 (-) True G1543122
TU1765923 lncRNA downstream 46621 35396366 ~ 35396641 (-) True G1543118
TU1765977 lncRNA upstream 30752 35477747 ~ 35485186 (-) True G1543161
TU1765938 lncRNA upstream 31840 35478835 ~ 35502036 (-) False G1543125
TU1765979 lncRNA upstream 37012 35484007 ~ 35491478 (-) True G1543163
TU1765940 lncRNA upstream 38611 35485606 ~ 35502036 (-) False G1543125
TU1765949 lncRNA upstream 46003 35492998 ~ 35500613 (-) True G1543133
XM_036952619.1 mRNA downstream 3135 35436159 ~ 35440127 (-) True LOC118941147
XM_036952620.1 mRNA downstream 3139 35436159 ~ 35440123 (-) False LOC118941147
XM_036952621.1 mRNA downstream 3140 35436159 ~ 35440122 (-) False LOC118941147
XM_036952622.1 mRNA downstream 3140 35436159 ~ 35440122 (-) False LOC118941147
XM_036952623.1 mRNA downstream 3884 35436159 ~ 35439378 (-) False LOC118941147
XM_036952609.1 mRNA upstream 3355 35450350 ~ 35454292 (-) False LOC118941144
XM_036952608.1 mRNA upstream 3355 35450350 ~ 35454885 (-) True LOC118941144
XM_036952603.1 mRNA upstream 10439 35457434 ~ 35460955 (-) False LOC118941142
XM_036952604.1 mRNA upstream 10439 35457434 ~ 35461153 (-) False LOC118941142
XM_036952600.1 mRNA upstream 10439 35457434 ~ 35461355 (-) False LOC118941142
TU1765900 other downstream 93600 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 263234 35175306 ~ 35180028 (-) True LOC110496081
TU1765772 other downstream 304708 35137637 ~ 35138554 (-) True G1542988
TU1765523 other downstream 703623 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 1280804 34161927 ~ 34162458 (-) True G1541318
TU1765944 other upstream 5623 35452618 ~ 35504157 (-) True G1543128
TU1765953 other upstream 48327 35495322 ~ 35496982 (-) True LOC118941140
TU1766170 other upstream 563992 36010987 ~ 36012686 (-) True G1543346
TU1767721 other upstream 1854513 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 2475160 37922155 ~ 37923334 (-) True ppt1

Expression Profile