RNA id: XM_036952611.1


Basic Information

Item Value
RNA id XM_036952611.1
length 2743
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC118941145
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35464507 ~ 35469032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctatgGTGATTaatggcactgccaaggtggagaggaaGTCCTGGAAAATAGACATTGTTGTGGATGCGACGGAATGTTTCCTGGGACTGAAAGACTTCTTGGCAGAGGAGTTGCATGGAGTATTGTCACAAGCCTCTCAGTGGGAAGCCCTAAGTAGTTCACAAGACCTCCTAGGAAGTGAGCTGGAAGGAAAGAAAGGAGCCAGGTTGCAAGAAAACAGATGAAAGAAGGGGCAACAATGTCGGAAGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACGGCTTCGAAAGAAGGGGCAATGGATGCCACTGGTAGTGAAGAGGAGTCCGATGCCTTGTCTAATGGCAGCCCCATACCACCTAAGAGGGGAAGGGGTAGGCCCAAAGGATCAGGCTCCAAGAAACCTAAGATACTGAGGGTACTAGACAAGCAGCCACGGGGCAGGCCACGTAAAGTGGTTGACCCTAATGCTGTTTCAGCAGAGCGTGGCCGGCCCAAAAAagttcagcaaaaaaaaaaattgggtagGCCGAGGAAGTACCTGTCacccgaggaggaagaggagagaaagatactGAAAAGCCAACCTAGAGTGTGGAAGCCGCTCGGAAGGCCGCGCATCCATCCCCGCAGGGATCCCCCCGCCACACCCACCTCTGCCGAGCCACGGAGAAGAGGCCGTCCACTCAAGGCATCAACAGATAGAGGTGCCAACTTACAGACGAACCCACCTCCAACTTCTAAAGTTTCAAAGCCCCCCGCTAAAGATGATTCCCCGCGAAAGAGTGGCCGCCCCTTAGGCTCCTTCAAAGCCAAGAGAGCAGCAGAGACGGATAGGTCCAACAGTTCACCCTCAGCCAAACAGGGTTGCACTGTTTCTCCAATAGTAAGGCTTTACCGCCGCTCCAACGGTAAAGCAAATGTGTTCGATGAAGCTGCCTTCCAAGCCCAGAGGCAAAAAGGCAAGAGAAAGTCTGTGAACGCTGATTATACAGCGTATGATTCAGAGGAGGAAAATGAAGATACACAGAGAAATGAGGATGAAGTCTTTTCTCTAGTAGAAGATGACAAAGAAGAGGAAATTAAACCACGCGATGGTCATGGCAAGGCTAGTAAACCTGGTAAGGTAGTGGCAGCTATTAAGAAAAAAGAAGTGGTTGTTCCTAAGAGGGGGGGCAGAAAGCCTGGCTCAATCAAAAAGGTTGTAAAGTAAAAGGAACCTGGGCGGAGCAGACTGAACGAGTATCAGTAGCATCTTGTAAGatgtttttttaacattttattatcTCTTACCCAGCTCTTTCTTGCTTTCTCAACTAACCTATGTGTCTGTTTGCTCTTGCTGTTATTTTTTATGGTTTGATGCCTTCGTGGAAACCTTGTGGAAAAGAAAAGTACTTTTTGTACTTCCTTGGTCATCTATAGCTTGAATGATGTGAAGACAATTTCATTGACAGTTGTTAATCTTGTATTATTCTGTTCAGACTTATCCCATTTAGATTTTTTCACTGGTACTGTCATTGATACAGTTTCTAATTCCATACACATCCTATAGTTGATGATATTCTCATTGAGGTTTGTTAATCTTGTATTGGTCTGTGCAGATTTGTCCAAATAAGCTCAAATGGTTTAAATCAATTGAATTAGttaagtattttgttttttgttttttatctcTCCGTAAGCTCTGTAGTTTTCGAATTGCTAATGTCTTCTAATTTTATTTGCCTGAATTGCCAAAGCTTTGAATGTAACAACTTCCCCGTCCCAGCTATCTTTGTTTCGATATAGATGTTGTTAGTATCACTATCATGGCACCCTTttacctataaagtgcactacttttgaccaaagccccatggaccctggtcaaaagtaatgcactataaggggaatatggtgccatttgggactgtaCCATAATCATAGTTGTTTTCTTTCACTTGGTTCATTGCATACTTCACCTTGTGGAGTCAAGACGGTACCTGTAAACTTCCAATCCATCATCCTTAAGATTTCTCTTAGAAGATGTATGGTTATTCACTATTGTGATGGTTTTGTTTGCCAGTATCATCCTTGTAATTCACTCAACATCACTCCTCACAGTTCTTTTTAAGACTTTTTATGTCAGCTCTTTTTACTTGTTTTTTATCACTTGGCTTTCATCTGAAGTGGATGGCTTGGTTTCACAGACTCTGGGTGATGTTGTGTGTAAATGTTCAGATTGTATGTTAAACATGTCTTCATCTAGTCtggtatttgtttatttaattaagTATGTGCTGGACCATGATATCAACAGTTCATATTGCATTACAACTTCGTAAATTCTGTAATATAAAAATAGTAATTGAGGTACACAACAGAATCTATAATTTGTATGAATTCATGTTCCTGTGACCAAAGCTTGTTAGTTTCATGTTTTCAACTTGGTCTCTCAACTTGGTCTGTTGCTTGGATTAATACAATGTTCTTCAAGATGCAGTTAGAACTATAGAGATACATACCGTAAGTTTTACCtatgtatttatctctgtgatcAGAAACAGGTCTGTGAAACCTCCCCAACGTTCATTTGAGGGTAATgtgaatttctgtttttttagaGAGAGCAAATATTTAGAAAGTTTCATGTAATAAAGTGAAATGTCAAACTTTGtttttgatgtttttttaatCTCAATAAAACCTCAAATATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765931 lncRNA downstream 55565 35400728 ~ 35408945 (-) False G1543124
TU1765932 lncRNA downstream 55565 35400728 ~ 35408945 (-) False G1543124
TU1765933 lncRNA downstream 55565 35400728 ~ 35408945 (-) True G1543124
TU1765927 lncRNA downstream 64018 35400254 ~ 35400492 (-) True G1543122
TU1765923 lncRNA downstream 67869 35396366 ~ 35396641 (-) True G1543118
TU1765977 lncRNA upstream 8715 35477747 ~ 35485186 (-) True G1543161
TU1765938 lncRNA upstream 9803 35478835 ~ 35502036 (-) False G1543125
TU1765979 lncRNA upstream 14975 35484007 ~ 35491478 (-) True G1543163
TU1765940 lncRNA upstream 16574 35485606 ~ 35502036 (-) False G1543125
TU1765949 lncRNA upstream 23966 35492998 ~ 35500613 (-) True G1543133
XM_036952599.1 mRNA downstream 290 35457434 ~ 35464220 (-) True LOC118941142
XM_036952601.1 mRNA downstream 3154 35457434 ~ 35461356 (-) False LOC118941142
XM_036952602.1 mRNA downstream 3154 35457434 ~ 35461356 (-) False LOC118941142
XM_036952600.1 mRNA downstream 3155 35457434 ~ 35461355 (-) False LOC118941142
XM_036952604.1 mRNA downstream 3357 35457434 ~ 35461153 (-) False LOC118941142
XM_036952606.1 mRNA upstream 2552 35471584 ~ 35475512 (-) False LOC118941143
XM_036952605.1 mRNA upstream 2552 35471584 ~ 35476106 (-) True LOC118941143
XM_036952586.1 mRNA upstream 9626 35478658 ~ 35482675 (-) False LOC118941139
XM_036952584.1 mRNA upstream 9626 35478658 ~ 35482676 (-) False LOC118941139
XM_036952587.1 mRNA upstream 9626 35478658 ~ 35483334 (-) False LOC118941139
TU1765900 other downstream 114848 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 284482 35175306 ~ 35180028 (-) True LOC110496081
TU1765772 other downstream 325956 35137637 ~ 35138554 (-) True G1542988
TU1765523 other downstream 724871 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 1302052 34161927 ~ 34162458 (-) True G1541318
TU1765953 other upstream 26290 35495322 ~ 35496982 (-) True LOC118941140
TU1766170 other upstream 541955 36010987 ~ 36012686 (-) True G1543346
TU1767721 other upstream 1832476 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 2453123 37922155 ~ 37923334 (-) True ppt1
TU1769081 other upstream 2678558 38147590 ~ 38152232 (-) False LOC110496154

Expression Profile