RNA id: XM_036952592.1


Basic Information

Item Value
RNA id XM_036952592.1
length 2699
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC118941140
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35492995 ~ 35499681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTTGAGATCCGGGGCTGTCTGGGAAGCCCTAAGTAGTTCACAAGACCTCCTAGGAAGTGAGCTGGAAGGAAAGAAAGGAGCCAGGTTGCAAGAAAACAGATGAAAGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACGGCGTCGGAAGAAGGGGAAGGGGCAACTGCGTCGGAAGAAGGGGCAACGGCTTCGGAAGAAGGGGCAATGGCGTCGAAAGAAGGGGCAATGGATGCCACTGGTAGTGAAGAGGAGTCCGATGCCTTGTCTAATGGCAGCCCCATACCACCTAAGAGGGGAAGGGGTAGGCCCAAAGGATCAGGCTCCAAGAAACCTAAGATACTGAGGGTACTAGACAAGCAGCCACGGGGCAGGCCACGTAAAGTGGTTGACCCTAATGCTGTTTCAGCAGAGCGTGGCCGGCCCAAAAAagttcagcaaaaaaaaaaattgggtagGCCGAGGAAGTACCTGTCacccgaggaggaagaggagagaaagatactGAAAAGCCAACCTAGAGTGTGGAAGCCGCTCGGAAGGCCGCGCATCCATCCCCGCAGGGATCCCCCCGCCACACCCACCTCTGCCGAGCCACGGAGAAGAGGCCGTCCACTCAAGGCATCAACAGATAGAGGTGCCAACTTACAGACGAACCCACCTCCAACTTCTAAAGTTTCAAAGCCCCCCGCTAAAGATGATTCCCCGCGAAAGAGTGGCCGCCCCTTAGGCTCCTTCAAAGCCAAGAGAGCAGCAGAGACGGATAGGTCCAACAGTTCACCCTCAGCCAAACAGGGTTGCACTGTTTCTCCAATAGTAAGGCTTTACCGCCGCTCCAACAGTAAAGCAAATGTGTTCGATGAAGCTGCCTTCCAAGCCCAGAGGCAAAAAGGCAAGAGAAAGTCTGTGAACGCTGATTATACAGCGTATGATTCAGAGGAGGAAAATGAAGATACACAGAGAAATGAGGATGAAGTCTTTTCTCTAGTAGAAGATGACAAAGAAGAGGAAATTAAACCACGCGATGGTCATGGCAAGGCTAGTAAACCTGGTAAGGTAGTGGCAGCTATTAAGAAAAAAGAAGTGGTTGTTCCTAAGAGGGGGGGCAGAAAGCCTGGCTCAATCAAAAAGGTTGTAAAGTAAAAGGAACCTGGGCGGAGCAGACTGAACGAGTATCAGTAGCATCTTGTAAGatgtttttttaacattttattatcTCTTACCCAGCTCTTTCTTGCTTTCTCAACTAACCTATGTGTCTGTTTGCTCTTGCTGTTATTTTTTATGGTTTGATGCCTTCGTGGAAACCTTGTGGAAAAGAAAAGTACTTTTTGTACTTCCTTGGTCATCTATAGCTTGAATGATGTGAAGACAATTTCATTGACAGTTGTTAATCTTGTATTATTCTGTTCAGACTTATCCCATTTAGATTTTTTCACTGGTACTGTCATTGATACAGTTTCTAATTCCATACACATCCTATAGTTGATGATATTCTCATTGAGGTTTGTTAATCTTGTATTGGTCTGTGCAGATTTGTCCAAATAAGCTCAAATGGTTTAAATCAATTGAATTAGttaagtattttgttttttgttttttatctctcctctttatctctctgtagtTTTCGAATTGCTAATGTCTTCTAATTTTATTTGCCTGAATTGCCAAAGCTTTGAATGTAACAACTTCCCCGTCCCAGCTATCTTTGTTTCGATATAGATGTTGTTAGTATCACTATCATGGCACCCTTttacctataaagtgcactacttttgaccaaagccccatggaccctggtcaaaagtaatgcactataaggggaatatggtgccatttgggactgtaCCATAATCATAGTTGTTTTCTTTCACTTGGTTCATTGCATACTTCACCTTGTGGAGTCAAGACGGTACCTGTAAACTTCCAATCCATCATCCTTAAGATTTCTCTTAGAAGATGTATGGTTATTCACTATTGTGATGGTTTTGTTTGCCAGTATCATCCTTGTAATTCACTCAACATCACTCCTCACAGTTCTTTTTAAGACTTTTTATGTCAGCTCTTTTTACTTGTTTTTTATCACTTGGCTTTCATCTGAAGTGGATGGCTTGGTTTCACAGACTCTGGGTGATGTTGTGTGTAAATGTTCAGATTGTATGTTAAACATGTCTTCATCTAGTCtggtatttgtttatttaattaagTATGTGCTGGACCATGATATCAACAGTTCATATTGCATTACAACTTCGTAAATTCTGTAATATAAAAATAGTAATTGAGGTACACAACAGAATCTATCATTTGTATGAATTCATGTTCCTGTGACCAAAGCTTGTTAGTTTCATGTTTTCAACTTGGTCTCTCAACTTGGTCTGTTGCTTGGATTAATACAATGTTCTTCAAGATGCAGTTAGAACTATAGAGATACATACCATAAGTTTTACCtatgtatttatctctgtgatcAGAAACAGGTCTGTGAAACCTCCCCAACGTTCATTTGAGGGTAATgtgaatttctgtttttttagaGAGAGCAAATATTTAGAAAGTTTCATGTAATAAAGTGAAATGTCAAACTTTGtttttgatgtttttttaatCTCAATAAAACCTCAAATATGACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765979 lncRNA downstream 1517 35484007 ~ 35491478 (-) True G1543163
TU1765977 lncRNA downstream 7809 35477747 ~ 35485186 (-) True G1543161
TU1765971 lncRNA downstream 20985 35422332 ~ 35472010 (-) True G1543155
TU1765932 lncRNA downstream 84050 35400728 ~ 35408945 (-) False G1543124
TU1765970 lncRNA upstream 14687 35511472 ~ 35511985 (-) True G1543154
TU1765964 lncRNA upstream 20354 35517139 ~ 35517936 (-) True G1543148
TU1765941 lncRNA upstream 22750 35519535 ~ 35679853 (-) False LOC118941150
TU1765942 lncRNA upstream 22750 35519535 ~ 35522106 (-) True LOC118941150
TU1766086 lncRNA upstream 255246 35752031 ~ 35752372 (-) True G1543265
XM_036952595.1 mRNA downstream 4478 35485826 ~ 35488517 (-) True LOC118941141
XM_036952594.1 mRNA downstream 4491 35485826 ~ 35488504 (-) False LOC118941141
XM_036952583.1 mRNA downstream 9660 35478658 ~ 35483335 (-) False LOC118941139
XM_036952585.1 mRNA downstream 9660 35478658 ~ 35483335 (-) True LOC118941139
XM_036952587.1 mRNA downstream 9661 35478658 ~ 35483334 (-) False LOC118941139
XM_036952579.1 mRNA upstream 3361 35500146 ~ 35503758 (-) False LOC110496088
XM_036952578.1 mRNA upstream 3361 35500146 ~ 35503934 (-) False LOC110496088
XM_036952576.1 mRNA upstream 3361 35500146 ~ 35504401 (-) False LOC110496088
XM_036952581.1 mRNA upstream 3361 35500146 ~ 35504401 (-) False LOC110496088
XM_036952582.1 mRNA upstream 3361 35500146 ~ 35504401 (-) False LOC110496088
TU1765900 other downstream 143333 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 312967 35175306 ~ 35180028 (-) True LOC110496081
TU1765772 other downstream 354441 35137637 ~ 35138554 (-) True G1542988
TU1765523 other downstream 753356 34735374 ~ 34739639 (-) True atp9b
TU1763897 other downstream 1330537 34161927 ~ 34162458 (-) True G1541318
TU1766170 other upstream 514202 36010987 ~ 36012686 (-) True G1543346
TU1767721 other upstream 1804723 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 2425370 37922155 ~ 37923334 (-) True ppt1
TU1769081 other upstream 2650805 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other upstream 2650805 38147590 ~ 38152232 (-) True LOC110496154

Expression Profile