RNA id: XM_036952634.1


Basic Information

Item Value
RNA id XM_036952634.1
length 3031
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110496102
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35912005 ~ 35918139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCCTATTCTGTGAAACATAATGTCATTTACAGTCAACTATCTAACCCTAAATCAAAATCATGATCCGTTCTAGACTCATGCTCATGTTATGACAGCAAGCCACGGGTATAAAGAGTTGTCAGCATAGCATAAAAAGTATTCAAATCCAATATCCGGTCATCTCTTTAAAGGGTTGGTTTCGGGTTTTCCAGCTCAGTGACATATGTATTTCCCAGTCTCGGCTGTCTCTTTAAGACAACGATAGCTTTGTGTCTGATTAATTCAATGTAACGAGAGATGCATTGGAGAAACCTATTTTCCGCTGTTACTGTGGATGTACCAGCTACAGAGAGTGTGAAAAAACTGGACATGTATTTCCTATTGGTCATGATCATCGGATAATCCAATTGGCGGTTATCATGTACTAAAGTTATAACGTGATACCGTTATTATAGGCAACGGATGTGGGGATACAAAAAATATGGATTTAAATTAGCTGGAAATTGAGTCTCCATAATTTCATCATTTTTCTGTAAGGGGATTTACCAAAAGTCGTTTTGGAGGAATAATAATATTTACATTAAATTGTTTGGAGGGGAGTTTTATTCTGACTGCACGAAATGTCTGAAAAACACGgtCTGGAGGACTCCAATCGGCAGGCCATGTCCCAACCCATGCAGCAAATGCAGCCCCCTCCATACCTCCCATCCCAGGACCCTAACATTGGCCAACAACACCCCAATATGCAGCACCCCAACATGCAGCACCCCAACATGCAGCACCCCAACATGCAGCACCCCAACATGCACCCCCCCAGCTGTGGCCCCCAGCCCAACTACCCCCCTCCACCCCCGCCCCCTGGCTCCGATGGCTACCAGGAGACCCAGTTCCACAATGGCTCCTACGGACACCCAGGGGCCCCACAGGGCTACACAGTCCAGACCCAGGGTCCAGGAGGGGGGGTCCCACATGCCCCTGTAGGGTATTTTCAACCAGGATACCCTCTCCAGCTGCAGCCCTGCACAGCCTATGTTCCTGTCTACCCCATGGCGTCGggACAGCCCTACCAGGGGATGCCCCAGGGTCAGATGGGCATGCAGATGCCCCATGGCATCGCTCTGATGGAGCCCCGGCGCCCTCCTCACGACTACCTGCCCATCGCTGTGCTCACCACCGTCTGCTGCTTCTGGCCCACAGGAATCATAGCCATCATCAAGGCAGTACAGGTGCGTACAGCAGTGGCCAGGGGGGACATGGTGACGGCAGAGATAGCGTCCCGCGAGGCGCGTAACTTCTCCTTCATCAGCCTGGCGGTGGGCATTGCCTCCATCGTCCTGTGTACCATCCTCACCGTGGTAGTCATCATCGCCTCCCAACACCATGACGATGACTGGGAACCCTAATACATAACACAGTGTGGCATCATGGGATGTGTAGTTTTGGGTGGAGATTGAAGAATAAGAGCACCGGAATTCACTCTCTGAAACTGGTATGTTATAttggggggtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatataacacacacacacacacacacatatattggggtgtgtgtgtgtatatatatatatatatgcatcctgtgtactgtatacagtactgACCTGACCTAATGACTACTAACGGGTTGAGAACCAATCACACTTATATTCAATTGCCAAAACAAATAGATACACATTACTTGCCAGTATTACTTACCATTTACACTCGGATATAATAGCGCTCCATAGCACTTATGGGGGAAACAGAGTACATACACAGAGGCattaaagggcaattccaccacATTTCAACCTCATTTTCATTATCTATAGCACagtaccagtgtctacatatgtgaaaacggCGCATGACATCATCAAATGAGATTCACAGTGACGTGGGGAGTAAGAAAATGCCCTCCATCTGGCTAGAAACTTgttgcaggttttgaaaatcaGAGTTTTTCTTACTTTTCCTCCTGCCTTATCACAGAGAATAATCTTTAGGACCTTCTTCTCTTTTTAACCACAGAGCATAGAAACGTGCaattttcacatatgtagacactggtatggtgctggagataatgaatatgaggttgaaaagtgtcAGAATTGCCCTTTAACTATGAATTACAGATGAATTTATGGTCCCCTTGAACCTAGGTAGACCAAACCATGGATCACAATGTATCTTGATAAACTATTTAAGCCTTCACAAAACTGCCAAAAATATCACAAATCATGACTGACATTAGTGCCATATATAAATAGTATTGTGTAAGGAGGTTGTTTTGAATTACTTCTAATATAAATACTTTTATTGAATTGTGTTTAGTCATTTATAGTTTTTGATTTATGATTTTCATAAACACCCGCATCTGACGATAGTatttagaaaaaaatatttattaaatGGATCGTATAAATTATAGTATAAGACTGCCAAACAGACGTAGGTATGGAGGGATACAAATGATCAGTATTCATTTTACACACAATCAAATGGAAAGTAAATAAAGACATATTGTTGTCTTATTATGAGATTAATATATGAAAATTGTGGACAAAAAGATTGGGATTTTTCTCCTGAGATGAATGACATCTCTATTTTAAAGTTGTGCTGGCGGAGGGATACACCATAGGGTGTACTGTGACCGTGTCTTTCCCCCCGCCTTTTTTTTATGACATGGGACTATTTTAGCTACATTGACAAATTGTTTGTTGCATAAGATTGTTTAATACTTGTTCACTTTATTTCTGTATGTATTTAGGTATCTTATAATTGATTAGTTTATTTATAATATTTATTTTTCATAGATTATTAGCATGTCACCATTATGTTTGAGTTGAAATCAATAGTTTATTGTACCCCTATTGGCCTACAAAACcttaactaaactcagcaaaaaaagaaatgtcctctcactgtcaacagcgtttattttcagcaaacttaacatgtgtaaatatttgtatgaacataacaagattcaacaactgagacataaactgaaca

Function

GO: NA

KEGG:

id description
K23896 PRRT1; proline-rich transmembrane protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1766118 lncRNA downstream 26111 35885664 ~ 35885894 (-) True G1543297
TU1766112 lncRNA downstream 41813 35869812 ~ 35870192 (-) True G1543291
TU1766109 lncRNA downstream 51170 35860636 ~ 35860835 (-) True G1543288
TU1766106 lncRNA downstream 68593 35843177 ~ 35843412 (-) True G1543285
TU1766086 lncRNA downstream 159633 35752031 ~ 35752372 (-) True G1543265
TU1766144 lncRNA upstream 53619 35971758 ~ 35972855 (-) True G1543321
TU1766166 lncRNA upstream 89498 36007637 ~ 36034838 (-) True G1543343
TU1766187 lncRNA upstream 119910 36038049 ~ 36038260 (-) True G1543360
TU1766190 lncRNA upstream 122995 36041134 ~ 36041539 (-) True G1543363
TU1766191 lncRNA upstream 124261 36042400 ~ 36043159 (-) True G1543364
XM_021571795.2 mRNA downstream 29541 35871685 ~ 35882464 (-) True LOC110496100
XM_021571793.2 mRNA downstream 95335 35808966 ~ 35816670 (-) True LOC110496099
XM_036952624.1 mRNA downstream 95433 35808966 ~ 35816572 (-) False LOC110496099
XM_036952625.1 mRNA downstream 95761 35808966 ~ 35816244 (-) False LOC110496099
XM_021571794.2 mRNA downstream 96213 35808966 ~ 35815792 (-) False LOC110496099
XM_036952631.1 mRNA upstream 154 35918293 ~ 35971612 (-) False LOC110496103
XM_036952629.1 mRNA upstream 154 35918293 ~ 35971717 (-) True LOC110496103
XM_021571800.2 mRNA upstream 57154 35975293 ~ 35980948 (-) True LOC110496104
XM_036952637.1 mRNA upstream 153556 36071695 ~ 36076984 (-) False LOC110496109
XM_021571809.2 mRNA upstream 153556 36071695 ~ 36077299 (-) False LOC110496109
TU1765944 other downstream 407848 35452618 ~ 35504157 (-) True G1543128
TU1765953 other downstream 415023 35495322 ~ 35496982 (-) True LOC118941140
TU1765900 other downstream 562343 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 731977 35175306 ~ 35180028 (-) True LOC110496081
TU1765772 other downstream 773451 35137637 ~ 35138554 (-) True G1542988
TU1766170 other upstream 92848 36010987 ~ 36012686 (-) True G1543346
TU1767721 other upstream 1383369 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 2004016 37922155 ~ 37923334 (-) True ppt1
TU1769081 other upstream 2229451 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other upstream 2229451 38147590 ~ 38152232 (-) True LOC110496154

Expression Profile