RNA id: XM_036952632.1


Basic Information

Item Value
RNA id XM_036952632.1
length 1523
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110496105
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35971057 ~ 35974902 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCAGGGATAGCGGGAGATCTGTGGGGCCCACAGGGGGAAGATCtatggagagagaaatgggatTGAGATGAATAGCCTAGTTTCTATGGGCTGTCCTCTATCGCGCAATACATTAGAGTCCATTATGAAAGTTGGTGCAGCAGTTCACTGTCTTTTCGGAAATGGCAAAGGCGGAACTTGGTTCGACATGGTGGTGTTCCCAAGCTctttgacagaggaagaggaaTCTCTGCAGAAGAAATATGCCAAACTCAAGAAAAAGAAAAAGGCACTGCTGGCTTTGAAGAAGCAGCAGAGTTCAACCAGCCAGACCAATCAGAGTGGATTGAAGCGAACTTTGTCAGACCAGCCGGTGCTAGATACAGCAACAGCTACAGAGCAGGCAAAGATGCTTATCAAGTCTGGAGCCATCAGCGCCATCAAGTCAGAGAACAAGAACTCTGGCTTCAAGCGCTCTAGAACGCTAGAGATCAAGCTCAAGGATCCAGAGAAAGTCCCAGGCCCTGTGGCTTTCCAACCATTCCAAAGGAGCATGTCCACTGATGAGGAACTTTCTGAGGCTGGCAAAAGAGCCCACAGAAAATCTTTGTACGAGAGCTTCGTCACTCCAGGTGACCGGGCGGCTcgtgatgaggaggagggaggcggCGGCCTTTCCACCAGCAGAGacatggagcgagagagagacagaggagatcgagagatggacagagagagggagcgcgacagagagagagaccgggacagagagagagaccggggcaGCGGCGACCGGGGCAGGGACAGAGAGCCGCGAGACCGCGAGAGAGACAGGAGCCAGGACGGAGACcgggaaaggggaggagacagagagtcaCGTGAGCGAGACGGACCGTTCAGACgATCAGACTCGTACCCAGAGCggagaggggtgaggaagggGAACACAGTGTACGTGTATGGAACTGGCCTTGTGGAGGACAACCTGCGTTCAGCCTTCTCACAACAGGGCACCATCATTGACCTGTCCATGGATTCCCCACGCAActGTGCATTTATCACCTTTGAGAAGATGGAGTCTGCAGACCAAGCTGTAGCGGAGTTGAATGGAAGCACGGTGGGAGACGTCACCATCAAAGTCAGCATCGCCAGGAAGCAGCCCATGCTGGAGGCAGCCACCGGCAAATCTGTTTGGGCCACTCTGGCTGTGCAGAACAGTGCCAAAGGTTCCTACAGAGACAAGAGAAACCAGGTTGTGTACAGTGAGGATTTCCTATGAGCTAAGAGGCGTGCCCCGCATTGGAGATCTGTACGAATCAATGAGTTAGCTTTGTATGCATTTTCTATATTGCATTTTGTGTTGGTTGTTGATTGCCCGATACGGCACCATGTGTCAGTTCTGAGTAGATGCTACATTTCATTCATGGCAATGACCATGTGAACAAAGATTGTGGTGGTTTGGTCTTGCTCTTGTAACCAGGGTTTTCATTGTTTTGTGGAGCTCAATAAATCACATCAATAAATTTTTCCATCTGGTTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765036 lncRNA upstream 30682 35909153 ~ 35940375 (+) True G1542292
TU1765040 lncRNA upstream 82549 35888294 ~ 35888508 (+) True G1542296
TU1765039 lncRNA upstream 83647 35887160 ~ 35887410 (+) True G1542295
TU1765024 lncRNA upstream 96869 35871601 ~ 35874188 (+) True G1542283
TU1765022 lncRNA upstream 102069 35868787 ~ 35868988 (+) True G1542281
TU1765123 lncRNA downstream 77976 36052878 ~ 36058125 (+) True G1542370
TU1765144 lncRNA downstream 126333 36101235 ~ 36101463 (+) True G1542389
TU1765146 lncRNA downstream 128964 36103866 ~ 36104133 (+) True G1542391
TU1765150 lncRNA downstream 160192 36135094 ~ 36197363 (+) True med30
TU1765170 lncRNA downstream 162347 36137249 ~ 36141322 (+) True G1542415
XM_036952626.1 mRNA upstream 62694 35889566 ~ 35908363 (+) False LOC110496101
XM_036952627.1 mRNA upstream 62694 35889611 ~ 35908363 (+) False LOC110496101
XM_036952628.1 mRNA upstream 62694 35895380 ~ 35908363 (+) True LOC110496101
XR_005037444.1 mRNA upstream 466421 35441143 ~ 35504636 (+) False LOC118941148
XM_021571804.2 mRNA downstream 24297 35999199 ~ 36021773 (+) False LOC110496106
XM_021571805.2 mRNA downstream 24297 35999199 ~ 36021773 (+) False LOC110496106
XM_021571806.2 mRNA downstream 24297 35999199 ~ 36021773 (+) False LOC110496106
XM_036952635.1 mRNA downstream 24297 35999199 ~ 36021773 (+) False LOC110496106
XM_021571803.2 mRNA downstream 24298 35999200 ~ 36021773 (+) True LOC110496106
TU1765069 other upstream 7352 35961201 ~ 35963705 (+) True G1542324
TU1765023 other upstream 100499 35870237 ~ 35870558 (+) True G1542282
TU1765003 other upstream 124861 35845814 ~ 35846196 (+) True G1542262
TU1764995 other upstream 133514 35836677 ~ 35837543 (+) True G1542254
TU1764994 other upstream 134440 35835836 ~ 35836617 (+) True G1542253
TU1765134 other downstream 101759 36076661 ~ 36088357 (+) False LOC110496111
TU1765133 other downstream 111874 36086776 ~ 36091606 (+) True LOC110496111
TU1766867 other downstream 789392 36764294 ~ 36765233 (+) True G1544007
TU1766999 other downstream 888021 36862923 ~ 36863183 (+) True G1544137
TU1767350 other downstream 1081081 37055983 ~ 37056487 (+) True G1544455

Expression Profile