RNA id: XM_021571800.2


Basic Information

Item Value
RNA id XM_021571800.2
length 2604
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC110496104
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35975293 ~ 35980948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCCGAACGAGCTggctcactgaaaagagccggaatgcccatcactaGTTGTCACGGGAAGTGCTGGTCCACTCTCGGTGAAAATAAAATGGCTAGCTGTATCGTAAAAATTCATTTAAACTAATATACGTGTTTTTGGTCTTAATGTAATGTTAGCAGTGTGATTAATGTTTGCTTTAAAATCAAaatttaagaagataaattgtagaaataggcggggtttatgatTTTGTGGCTGTGTAACTGCTGACGCTCGTTTGAAACAAGCTAACAAAGTAAAcatactaacgttagccagctggcTTGCTAGCCAATATACAATGAATGACCGGTTATTGAGTGCCTAGTTACTCCACAACATATAGTAAGGGGAAAAGATATCTACAGTAGTAGCAGGCTCCACGGTAGCTAAGATGGAGGTGCTGTGTTTCCGGTTGCCTGGTCACGGTGACGCCACCCTGAAGAGCATGAACTCCCTGAGGTCCAGGCAGCAGTTCTGTGACATCACTATAGTGGCCAGCGGCAGGCAGACGTTCCGGGGACACAAAGTGGTCCTTGCTGCCTGCTCCCCCTTCCTTAGGGACCAGTTCCTGCTCAACCCCTCCTCTGAACTGCAGGTGTCAGTCCTTCACAGCTCCTCTGTGGTATGTGAGCTGCTCCAGTCCTGTTACACCGGTGTGTTGCAGTTCAGCCCCAAGGAGATAGTGAATTATCTGACGGCCGCTAGCTACCTGCAGATGGAGCATGTTGTGGAGAAGTGCCGGGGAGCCCTGGGCAAGTACATGCAGCCAAAGAACCCCAGCTCACCAAAGATCAAGTCAGAAGAGAGCCAATCGATGCCAGTGACAGTCAGTGGTAGCAGCCACTCCCTTATGTCAACCTCTGCTGATCATTCCTCACTGCAGCCTCACAGCCCTGTACAGTCTCAGGCTGATGACCATACAGACTCAAACAATAAGACAGATATACAACACGATGAAGACCCTAACACAATGGATGAGATTAAAGTGAGAGTAacagaggagggcagggaggaTTATGACGTGTTCCGGATCTGCATTGAGGATGAGCAGGAGCCGGAAGAAAGGCGAGAGGCAGAGGAAGGCGGAGAGGAAGCCACAGAGGGGCATCAGGGGTGCCAGTACCAAGATACGGACAGTGTCATAGTGGGAGGGGGCAGGGGTGATGATATGGCCCCAGCTGAAATGTCCATCCGCAACAGCGGCTTTGAGAGGGAGGGGCTCCAAGGCTGGAGGCGTAGACTCACCGACTCACCCAAAGTGGgccgggggagggggaggggcttcAAGAGGAAGCGTGGCTCGTACcgcgagagggagaggaggcctCTGGGTATGCAGTACCAGGAGGCGTGGCGTCTACCCACCGGGGCGGAGATGATGCAGGGCTTTGGCCTGGACTTCAGCCAGGAAGCCATGAGGTCAGCGTTCCTCTCGGGGGGCGATCTCCCACGGCTAGACTACGGGATGGGGGAGGttcagggagaggagctggtgccCCGGGACGGGAATGGTCAGGCCCACTACAACCTGGATGACCCCAGTGGTGATGGAGGTGAAGGTAACATGGGGATGGCGGCTGTGCCAACAGGTGGTGACGGGGCGGGGGATGAGTCTGTGGCCGTGGTGGGCTCGACCTCCAGCACAGCGGGGCCGGTGGCATGCGAGCAATGCGGCCTGACCTTCCCCTCGGCCCACTCCCTGGCCGTCCACACGCGCGCCACCCACTTGCTGTACGTGTGCCCCTGCTGCGGCAAACACTTCAACCACTCCAGCAACCTCAACCGCCACATGACTGTGCACCGCGGTGCCAAGGTCCACCGCTGCCCGCTCTGCGACAAGACATTCACGCAGAAGTCCACGCTGTGCGATCACATGAACCTACACAGCGGTGAGCGGCCTCACTGCTGCGCCTACTGCCACTCGCGCTTCGCCCACAAGCCGGCGCTGCGGCGCCACCTCAAGGAGCAGCATGGGAAGACGACCGCTCAGAACAGCCTGGAGGCACAGGCCGAGATGGAGCGAGTGGCAGGGccaggtgaaggagagggagacactCAGGACAGATTTGACCTTTGAAAAGGACACTGGaacagggagggggaggagagatgctCCCTTACCCCTCTTCTCAGCCACAATGTACACTCATTGACTAAGCATTACAGGTTGCAGTTGGAGGTACAGGGGGGTTATTCAAGCAAGCGGCTGTGTGCTTACCTTCTGCTCTAATTGCCAAAAGAGTGGTTTGGAGTGTGCCTTTGAGTTTGTGGGTTGGAAACAAGGTTGTGTGTGCTGGAGGGACCTACTAAGATCTTGAAAGGGAAAGCCCCTACTTTTAGACCTGGGGTGCACAACTCTGGTCCTCCTCACGGGCCGAAGTGTATGCGGTTTGAAGCTCTGGCCAGTCAATGACATGGATTGATTATTTATCTCTTAATTATTTAATTGAAGGGGGGGGGAAATTATGACCTACTGTACAGCACCGTGGCTCTGGAGAACTGGAGTTGTGCACACCTCAGTTTTAGACCTTTGTCTCATTTGTTACTCATTGGCTGACCAATAAAATATTTTACAATAGTG

Function

GO: NA

KEGG:

id description
K10499 ZBTB12; zinc finger and BTB domain-containing protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1766144 lncRNA downstream 2438 35971758 ~ 35972855 (-) True G1543321
TU1766118 lncRNA downstream 89399 35885664 ~ 35885894 (-) True G1543297
TU1766112 lncRNA downstream 105101 35869812 ~ 35870192 (-) True G1543291
TU1766109 lncRNA downstream 114458 35860636 ~ 35860835 (-) True G1543288
TU1766106 lncRNA downstream 131881 35843177 ~ 35843412 (-) True G1543285
TU1766166 lncRNA upstream 26689 36007637 ~ 36034838 (-) True G1543343
TU1766187 lncRNA upstream 57101 36038049 ~ 36038260 (-) True G1543360
TU1766190 lncRNA upstream 60186 36041134 ~ 36041539 (-) True G1543363
TU1766191 lncRNA upstream 61452 36042400 ~ 36043159 (-) True G1543364
TU1766212 lncRNA upstream 87232 36068180 ~ 36074235 (-) True LOC110496109
XM_036952629.1 mRNA downstream 3576 35918293 ~ 35971717 (-) True LOC110496103
XM_036952631.1 mRNA downstream 3681 35918293 ~ 35971612 (-) False LOC110496103
XM_036952633.1 mRNA downstream 57154 35912005 ~ 35918139 (-) False LOC110496102
XM_036952634.1 mRNA downstream 57154 35912005 ~ 35918139 (-) True LOC110496102
XM_021571795.2 mRNA downstream 92829 35871685 ~ 35882464 (-) True LOC110496100
XM_036952637.1 mRNA upstream 90747 36071695 ~ 36076984 (-) False LOC110496109
XM_021571809.2 mRNA upstream 90747 36071695 ~ 36077299 (-) False LOC110496109
XM_021571810.2 mRNA upstream 103186 36084134 ~ 36100917 (-) True LOC110496110
XM_036952640.1 mRNA upstream 215187 36196135 ~ 36308398 (-) False ext1b
XM_021571815.2 mRNA upstream 355567 36336515 ~ 36453812 (-) False samd12
TU1765944 other downstream 471136 35452618 ~ 35504157 (-) True G1543128
TU1765953 other downstream 478311 35495322 ~ 35496982 (-) True LOC118941140
TU1765900 other downstream 625631 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 795265 35175306 ~ 35180028 (-) True LOC110496081
TU1765772 other downstream 836739 35137637 ~ 35138554 (-) True G1542988
TU1766170 other upstream 30039 36010987 ~ 36012686 (-) True G1543346
TU1767721 other upstream 1320560 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 1941207 37922155 ~ 37923334 (-) True ppt1
TU1769081 other upstream 2166642 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other upstream 2166642 38147590 ~ 38152232 (-) True LOC110496154

Expression Profile