RNA id: XM_021571806.2


Basic Information

Item Value
RNA id XM_021571806.2
length 4402
RNA type mRNA
GC content 0.53
exon number 27
gene id LOC110496106
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35999199 ~ 36021773 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatgtttttttttttgtttgttggtgaGATGAAACTGCCAAAACTATGAAAGGTATTATTGTACATCAGAACTGCAACACAAGATTTGCTCAAGTCTAAAATGTTGTCTGTAATCGTAACATGGTGTTTGTATGTTCACAGATTAAATTGAACGTTTACTTTCATGTTTCACGAATGGCTTTTCTTACAATCCTAACAATTTAGGTATGGCTTTTCTTACGATCCGCACGTTCAACCTTTTGGCAGGAATCTGGCTCCATACTTTTCCAGTACGCATCCCTTTTACGAGTTTGGCAAACTGACTTGGAACTTGTTCAGTCATTTCCGCCAATCAGTGAACCAAGGGGCGGAGAAAGGACGTTTACGCACACCACGTAAAATACGTCAAATTTTATTGGAAACATGTCGGCATCTGAGAAAACGTCCAAGGAGTTGTCTGAAAGTGATGCATTGGAAACTGATCCTGAAGTGAGACTCTCAAGCCAGTCGGATGAAGGTGATGCAAGTACCGACACAGCAGTGGTTACCAAGGAGACCGAGCCCATGGGTGGGAGGCTGTCACAGGCGCTATTTCAGGAGATTCAGGGAGATGGTTCGAAAAACGGGGAGGAGAGCGAACGACTATCAACAACATCCTCTTCTGTGTCAGTCAGAACCCTTGCAGGACATGCAGCGAAGAGCCTTCCATCCACATCTTCCTCTTCaatctcctcctccacttcctctcctTCTGGCAGAGCAAAGATGAGTGTTTTTGGTCCTGGAAGTAAAGCTCTCCTGCcacctccctcatcctcctctccgcCTCCTGTCCCTGTCCAGACAGTAAAGATACACCGTGCTCGCAAGACTATGAACAGACCTCCCCCAACACAGATGAGGTGCATCGAGTCACCAATTGTGCCAGTCAACCCCACAGACCCCACGACCAGCTTCGCGACAGACAGTGATACTGCAGCAAAAAGGAGAAGGTTGGTCCAGGCAGAAAGCGCTATAGGCACAGAGCAGAAGGCAGATCATGTACTCCGAGAGGCGGCGAGACGACGTGACAGTTGGCTGGAGGATGCAGACGAGAACGAGTTTCTTCTCTATAACCCCTATGCAAGAGATGACACGGACCCAGCCTTTTCCGACTGCAAGTCTGAAGATGGTGGACTAGAGGAAAGGCTACATGAAAGAGATGCCGATGCATCTGGTAACATGTCAGATCATAGCTCAGAGTCGGACCCACAGAGGCAGGGCCAGAGGAACGAAGGGAGCAGTGATTCGCCATGGACTCGCCCAGGGCGaggcaaagggagagagagagccgaaGGAGCGGAGGCAGGAAGAGCAGTGTCGGCAGCAGCTACTTTTGGTGGATCCTGCGAGTACACAGAGGTTGCCTTGGGCTCCCTGGACATCGTGGCAACAGACAACCTAACACTCTCACCTCACCACGGCAGTGACGCTGGGGAGACGGAGCGTCTGGAGGAGCTGCCTCTGTGTAGCTGCAGGATGGAGGCACCACGCGTAGACAGCGCCAGCAGACAGCCCAACAGACTCTGCATGGCCACAGAGAGCGTGAACGGAGAGCTGGTGGGCTGTACCAATATCATTCAGAAGGGGGAGACCATGCGGCCATCCAGTCGTGTTTCCCTCATTGTGCTGTGCGAAAACCATCGGTCACATATGGTCAAACATCACTGCTGCCCTGGATGTGGATACTTCTGTATCGCAGGCACCTTCCTAGAGTGCTGTCCGGACCAGCGCATCGCCCACCGCTTCCACCGGGGCTGTGTGACAGTGCTGGGGGCTGGAAGGGGCAGGGGCATGGGCACAGGCATGCTCTTCTGCCCCCACTGTGGCGAGGATGCCTCGGAGGCCCAAGAGGTCACCATCTCCCCCTCAGCATCCGTGGCCACTGTGGTCACCACTTCTGCCTCGTCCACCACCACACTGTCcctcccagcccccatcccctctgacctctctctggtGGCCTCCACGTGGCCACTGAAGAACGGGAAGAGGCCGGTGGGTCCTATCAGTGCGAGGATGCGTGGGGTGGTAAAGAGAGACCAGGATCAGCGCCCCCCCCAAGCCGCTCTGGCAGCAGGGACTGTCAACGCAGCCCCCCCAGGCGAGGGGGGAGTGGACAGTGTGggaccctccctctgtctgcccaATGGGAAGCCAGTCTGTCCCAGTGCACTTCCCCCCGGGCCCAGTAGGGCGGCGCTGCAGAAAGCCATTCTCACCCAGGACACTGAGAAGAGGAAGAAGCTGAGGTTCCACCCCCGCCAGCTCTATCCAGCTGCCAAGCAGGGTGAGGTGCAGAGGGTTCTGCTCATGCTCATGGAGGGCATAGACCCAGCCTACCAGGCTGACTCCCAGAACAGACGCTGTGCTCTCCACGTTGCCGCCCAGAGAGGCCTGCTGGAGGTCTGCTACATGCTGGTGCAGGCAGGTGCTAAACTGGACATCCAAGACAAATCCATGAGGACCCCTCTCCTGGAGGCCATCGTCAACAACCATGTGGAGGTGACCAGGTACCTGGTCCAGAGTGGAGCCTGCGTCTATCACATTGAAGAAGATGGCTACACTGGTCTCCACCACGCTGCCAAACTGGGCAGTCTGGACATTGTCACCCTTTTGTTGGAGACGGGACAGGTGGACATCAACGCACAGGATAGTGGAGGCTGGACTCCTATCATCTGGGCTGCAGAGCACAAGCACATCAAGGTCATCAGAGCACTGCTTAACAGGGGGGCTGACGTCACCCTCAAAGACAAGGAGATGAACGCGTGTCTCCACTGGGCGTCCTTCGCAGGCTGTGTGACGATAGCAGAGATGGTGCTGAACGCCGGCTGCCCGCTGTCTTCTGTCAACATGCACGGGGACACTCCCCTACACATCGCTTCCAGGGAGGGCTTCCTCGATTGTGTAACGCTCTTTCTCTCTAGGGGGGCAGACATCGACATCATGAACAGGGAAGGGGACACCCCTCTTTCTCTGGCGCGTTCCGATTCGCCCGTCTGGGTGTCACTCCAGATAAACAGGAAGCTGCGGAGGGGGATAGCTAATCGTATGCTTCGTACAGAGAAGATCATCAGCAGTGACGTAGCCCAGGGGTATGAGAACGTGCCTATCCCCTGTGTGAACGCAGTGGATGATGAGGGATGTCCCTCAGACTACAAGTATGTTTCCGAGAACTGTGAGACTTCAGCCATGAACATCGACCGCAACATCACACACTTACAGCACTGCAGCTGCACAGAGGACTGCTCTTCCAGCAACTGTCTGTGTGGACAGCTCAGTATCCGCTGCTGGTACGACAAGGACCACCGGTTGCTCCAGGAGTTCAATAAGATCGAACCGCCTCTCATATTTGAATGTAACCTGGCTTGCTCCTGCTACCGCACTTGCAAGAACAGAGTGGTGCAGGCGGGCATCAAGGTGCGTCTCCAGTTGTACCGAACAGAGAAGATGGGATGGGGAGTTCGGGCTCTACAGGACATTCCCCAAGGCAGCTTCATCTGCGAATATGTAGGAGAACTGATCTCTGATGCAGAGGCAGATGTAAGGGAAGATGACTCCTACCTCTTTGACCTGGACAACAAGGACGGGGAGGTGTACTGCATCGATGCCCGTTACTACGGTAACATCAGCCGCTTCATCAACCACCTGTGCGACCCCAACATCATCCCGGTGCGGGTGTTCATGCTGCACCAGGACCTGCGCTTCCCCCGCATCGCCTTCTTCAGCTCCCGAGACATACTGACAGGACAGGAGCTTGGGTTTGATTATGGAGACCGCTTCTGGGACATCAAGAGTAAATACTTCACCTGCCAGTGTGGATCAGAGAAATGCAAACACTCAGCGGAGGCCATCGCCTTTGAGCAGAGCAGGCTCGCTCGACTGGAGACCTGCCCAGAATTGGATACTGACCCTGGGCTTGCCATGCTAGGAAACTTCTAGGCTTCCCCTGCGGCTTGGTGCATGTATTTCTCTGTTTCTACACTCACTCTTACATTTCGTATGAATTTGTGCAGTTATTGTTTGTGGTAATAGAGCCTTAACTTTGTCCACGTATCTGATATAAATGACTGAAAAAGGTGTCTTCTGTGTAAGACTCATACGTacggtatatatattttttttactatacTATTGCTATGCCTCTTTGCCATGAGACATCAGTGGCACTACAGCATGTTATGAAATGCCAGTTACGCTCACCACATGCTGAACAATTCATTTCATAGTACTCTACCATGATACTGTCTACTTGTTAAGTAATTGAAAAAGTTACCGACCAGCTGACTTCCGAGTAGTATTGAAGTCTGCTTTTATACAAAATGTACGTTGTTTTGTCATTTAGTACAATTTATTAAACTTTTACAAATGGATCCACTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1765036 lncRNA upstream 58824 35909153 ~ 35940375 (+) True G1542292
TU1765040 lncRNA upstream 110691 35888294 ~ 35888508 (+) True G1542296
TU1765039 lncRNA upstream 111789 35887160 ~ 35887410 (+) True G1542295
TU1765024 lncRNA upstream 125011 35871601 ~ 35874188 (+) True G1542283
TU1765022 lncRNA upstream 130211 35868787 ~ 35868988 (+) True G1542281
TU1765123 lncRNA downstream 31105 36052878 ~ 36058125 (+) True G1542370
TU1765144 lncRNA downstream 79462 36101235 ~ 36101463 (+) True G1542389
TU1765146 lncRNA downstream 82093 36103866 ~ 36104133 (+) True G1542391
TU1765150 lncRNA downstream 113321 36135094 ~ 36197363 (+) True med30
TU1765170 lncRNA downstream 115476 36137249 ~ 36141322 (+) True G1542415
XM_036952632.1 mRNA upstream 24297 35971057 ~ 35974902 (+) False LOC110496105
XM_021571801.2 mRNA upstream 24297 35971679 ~ 35974902 (+) True LOC110496105
XM_036952626.1 mRNA upstream 90836 35889566 ~ 35908363 (+) False LOC110496101
XM_036952636.1 mRNA downstream 2120 36023893 ~ 36068107 (+) False LOC110496108
XM_021571808.2 mRNA downstream 19283 36041056 ~ 36068107 (+) True LOC110496108
XR_005037454.1 mRNA downstream 60336 36082109 ~ 36084766 (+) False LOC110496111
XM_036952638.1 mRNA downstream 125930 36147703 ~ 36158391 (+) False LOC110496805
XM_036952639.1 mRNA downstream 126703 36148476 ~ 36158391 (+) True LOC110496805
TU1765069 other upstream 35494 35961201 ~ 35963705 (+) True G1542324
TU1765023 other upstream 128641 35870237 ~ 35870558 (+) True G1542282
TU1765003 other upstream 153003 35845814 ~ 35846196 (+) True G1542262
TU1764995 other upstream 161656 35836677 ~ 35837543 (+) True G1542254
TU1764994 other upstream 162582 35835836 ~ 35836617 (+) True G1542253
TU1765134 other downstream 54888 36076661 ~ 36088357 (+) False LOC110496111
TU1765133 other downstream 65003 36086776 ~ 36091606 (+) True LOC110496111
TU1766867 other downstream 742521 36764294 ~ 36765233 (+) True G1544007
TU1766999 other downstream 841150 36862923 ~ 36863183 (+) True G1544137
TU1767350 other downstream 1034210 37055983 ~ 37056487 (+) True G1544455

Expression Profile