RNA id: XM_021571809.2


Basic Information

Item Value
RNA id XM_021571809.2
length 2034
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110496109
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36068180 ~ 36077299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTAGCCACGGGAGAAAAAGCACGTTTTCCTATATTTTTAGCATTTCTATCCCCCCACAATAttatatgtgatatttcagtttacaaACGTCTATTTTACATGGGAATCCGAATGACTGATCAGGACCTTTAAACTCCTCCTAGTTGTTTCTTTTTTTTACGGAAACGGGCGGGGTGGTGCACAGGTACGGTGAAATCTCGAAGCTAGCTCTCGTCTGGCGGAGTTATTACTTTTTCAGTAAACAATTATGGCGGCCGCGGATCCCTGGTCCTCGAGTGACGGCGGGCCTGCAAGCAGAGGAGGGTTCACGGATGGTGAGAACAGCAACGAGCGCGATGGCCCGGGAGGAAGCGGCGGAGAGACAGAACGCAAGCCAGATCGGGCCACATTCGAATGCAACATTTGTTTGGACACAGCAAGGGACGCTGTCATCAGTTTGTGCGGGCACTTGTTCTGCTGGCCCTGCCTTCATCAATGGTTGGAGACGCGACCCAGCCAACAGCAGTGTCCTGTGTGTAAAGCAGGCATCAGCAGAGAGAAAGTCATCCCCCTCTACGGCAGAGGGAGCTCCAGCCAAGAGGACCCCAGGTTGAAAACCCCGCCTCGTCCTCCGGGACAGAGAACAGAGCCAGAGAGCAGAGGGCCCTTCCAGGGGTTCGGGGACAATGGCTTCCACATGTCCTTTGGGATCGGTGCTTTCCCTTTCGGCTTCTTCACCACAGTCTTCAACACCAATGACCCCTACCACAGAgcagACGCATATGCAGCCGATCACCAAGGCAACGGCAACAACTGGCAGGACTCTCTCTTCCTGTTCGTGGCcatattcttcttcttctggcTGCTGAGCGtgtaagggagagggagggaaaggaaaggTGCTCACACTCATACACACGTCAAAACACCAGAAATGACAGACTTACTCAATAGTGgctgagtgtctgtgggtttatgCTCTTcctttgtacttgattgatggattaaggtcactaattaggaAAAAACTCCCCTCACCTGCTGTCTAGGTCTTTATTTAAAGGAAACAAAAACCAGAAGACACCAGGCCCTCCATGAAATATGACACCTCTGCTTTAGACTATAGATGGGTGGTGGTGGGATGACTGGCAGTTCACTCTTAGCAAGAGATATCTAGTTCAGGAAACACAAACCAGTCAAAGATTTGTGTATCCAAATGATTTACGAGACTCACTTGGATAGGGAGAGTACACAGACACCACTCTGGTGGTGGATGATACCCAAGCGTGAGGGTGAGTAAAACGAAGACACTATCGCCCTCTTTCTGTGGAATTTGTACataaatgcgcacacacacacacaggggtgggGGCTGGCTGACTCTTTTTTTTTAGGGATGGGACTGGTGGATAGTCAAAATGAAATGATTGGAATGATTTAATAGTAAATTAGGGGATGATCTAAGTAATTTTACTGCACCACAAAACCTATGTAATATGTGGTTAACGTAGAACTATTTAGACAAAATGGAATTATTGTTTTTGCCCCTTGAAGGAATTTCAGGTTTAATTCCCCAAATATTAGAGCTTGTTTGAGTTTTAAGGGAGGGTGAGAATGGGATTTACCTGATAACATCGATGTTTTTCTTTAATCACTATAGCCACTTTTTTTCCAAGCCAAAGAATAACGTATCACCGTCAAGTACAATTTGGGGAAAATGTATTTGGATATTCCTGTTTACAATTTAACCGATTAAATAATTTGTCCGTAGATTTACGAACCAAATGTATGAATATTCTTTAGACTAGTGTACAGATGGATACACTAACAACTTTATATATAATCTTAAACTGCCATTGCACTGTGAAGTCATATAGAGAAGACAGACCTAATAATGTGGATTAGAGctacagtgtattcagaccccttcacctttttcacaatttgttacagccttgttctaaaatagattcaattATTTTTCTcaatctacagtcgtggccaaaagttttgagaatgacacaattattaattttcaaagtttgctgcttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1766191 lncRNA downstream 28536 36042400 ~ 36043159 (-) True G1543364
TU1766190 lncRNA downstream 30156 36041134 ~ 36041539 (-) True G1543363
TU1766187 lncRNA downstream 33435 36038049 ~ 36038260 (-) True G1543360
TU1766166 lncRNA downstream 36857 36007637 ~ 36034838 (-) True G1543343
TU1766144 lncRNA downstream 98840 35971758 ~ 35972855 (-) True G1543321
TU1766224 lncRNA upstream 26980 36104279 ~ 36104504 (-) True G1543390
TU1766269 lncRNA upstream 115449 36192748 ~ 36193845 (-) True G1543428
TU1766268 lncRNA upstream 119040 36196339 ~ 36200850 (-) True ext1b
TU1766450 lncRNA upstream 238540 36315839 ~ 36316263 (-) True G1543605
TU1766485 lncRNA upstream 290633 36367932 ~ 36369697 (-) True G1543639
XM_021571800.2 mRNA downstream 90747 35975293 ~ 35980948 (-) True LOC110496104
XM_036952629.1 mRNA downstream 99978 35918293 ~ 35971717 (-) True LOC110496103
XM_036952631.1 mRNA downstream 100083 35918293 ~ 35971612 (-) False LOC110496103
XM_036952633.1 mRNA downstream 153556 35912005 ~ 35918139 (-) False LOC110496102
XM_021571810.2 mRNA upstream 6835 36084134 ~ 36100917 (-) True LOC110496110
XM_036952640.1 mRNA upstream 118836 36196135 ~ 36308398 (-) False ext1b
XM_021571815.2 mRNA upstream 259216 36336515 ~ 36453812 (-) False samd12
XM_021571816.2 mRNA upstream 259216 36336515 ~ 36461461 (-) True samd12
XM_036951040.1 mRNA upstream 387271 36464570 ~ 36465358 (-) True abrab
TU1766170 other downstream 59009 36010987 ~ 36012686 (-) True G1543346
TU1765944 other downstream 567538 35452618 ~ 35504157 (-) True G1543128
TU1765953 other downstream 574713 35495322 ~ 35496982 (-) True LOC118941140
TU1765900 other downstream 722033 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 891667 35175306 ~ 35180028 (-) True LOC110496081
TU1767721 other upstream 1224209 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 1844856 37922155 ~ 37923334 (-) True ppt1
TU1769081 other upstream 2070291 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other upstream 2070291 38147590 ~ 38152232 (-) True LOC110496154
TU1769139 other upstream 2087951 38165250 ~ 38214049 (-) True G1546053

Expression Profile