RNA id: XM_036952638.1



Basic Information


Item Value
RNA id XM_036952638.1
length 2198
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110496805
representative False

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36147703 ~ 36158391 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GATGCATGGAACTTGTTCTCTTTTATGAGGAGATCTAGATGATGATAACACTAGAAATGTGCCTATTTGTTTTACATTagtcaatttaaaaaaagaaaattacatttttattttgtctgTTTTTATTTCTCCATCTAAATATATTGGCTGGGTGTTAATAGTTTAACAAGTTTTACATTGTTTACTGTAACCAGTTGTATATTGTTTGTTGTCGTCCCTGAAGCGCTCAATCATGTTCAGAAAGGATCCAGAGAAAACTCAACTGGTCACCGAGAAAGGCACCATGTATAGCATCACCATGGAAAGtgTGTCCACAGATGAGATAATGCAGATGGAGAAGGACAGAAACATCAATCATTGCCATGACAACAGCCAGGCTACGGAGGACAGGGAGCGGGAGAAGCAGTTGGCCAGGAAGAGGCTCTATGTGGTCTCGGCTGTTTGCTTGGTCTTCATGATCGGAGAGATCCTGGGTGGTTACTTTGCGGGGAGTCTGGCGGTGATGACAGACGCCGCCCACCTGCTGGTAGACTTTGCCAGTTTCATCATCAGCCTGGTGTCTCTGTGGCTCTCGTCCAGACCCGCCACACGCACACTCAGCTACGGCTGGCATCGTGCAGaGATCCTGGGCGCTCTGCTCTCGGTGGTGACCATCTGGCTTGTGACAGGTGTGTTGGTCTACCTGGCCGTGCAGCGGCTCATCAGAGATAATTACGAGATCGAGGGGACCATCATGCTCATTACCTCAGGCTGCGCTGTGCTTGCAAACATCATTATGGCTTTCACCTTGCACCAGTCCGGGCATGGGCACAGCCACGGGGGCCTCAGTAGCGGGCACAGCCACGGCAACAATGACAAGGGCAACCACGGTCACAGCCACGTGGTGAGTGATAGGCACGGGCACAGCGACAAAAGTAACCACTCACACGGTAACGGTAACCAGGAAAACCATTCCCATGGAAACGGCGATTTGGAGCAGCATGGTGGGGTGGACGTTCAGCAGTATGAGTTGTCGGAGTCACGACCTCAGGCCAACGCCAGCGTGCGTGCTGCCTTCGTGCACGTGGTGGgagacctgctccagagcatcAGCGTGCTGGTCAGCGCCATCATCATCTTCTTCAAGCCCGAGTATAAGATAGCTGACCCTATCTGTACGTTCCTGTTTTCCATATTTGTCCTGGGAACCACCATCACCATTCTGAGAGACATCCTGATGGTCCTCATGGAAGGCACCCCAGCTGGAGTGAAGCACGGTGAGGTGAGGGATCGGCTGCTGGCAGTGAAGGGGGTGAAGTCTATCCATAGCCTCCATATCTGGGCCCTGACTATGAACCAGACGGTGCTGTCAGCACACGTGGCTATAGATGACTTAGTGGATGCCCAGCCAGTTCTAAGGGAGATGACCCAAACTTGCTTCTCCAACTACAACTTCCATTCAGTCACCATACAGCTGGAACAACAGGCCGACCAGAAGCCTGGGTGTAGCCTGTGTGACGACCCCAAAATATAGACGTCTGTTTAAGCCCATGGGAGAGGCCAGGAGCCCAGAGGAATAAGCTACCAAACCAGGATTTAGTTGTAACCTGGACAGGCTTTTGGCCAGTGCTTGACTTGGCCAGGAACATGCTGGAACTGAGTTATAGCACCTCACATattctactgcttgagttcctGCACCTCTTAGAGAATATTGGCTTAAAATATTccgtggtgtaaagtacttaagtgaaaatattttttaagtacttatgttgttttttggggttatctgtactttactttactatttatatgtttGACAACTTTAAGTTTTACTGcaccacattcctaaagaaaataatgtacttcttATGTACCTCAGTCgttgtataatttcaaatccaaagtgctgcaGGAGAaacaaaatgtgtcactgtcccaatacatgGAGCTCACTGTGACCCAACTGGAGGATTGTTAAAACATTGCAGCGTTATCATAaatcccctgacacccaaaagttcttgttacattttgaatgcttagcaggaaagAACAATTGTCTAATTCATGCACTTAttgagagaacatccctggtcatctctacagcctctgatctggcagaatcactaaacacaaatgcttcgtttgtaactTATTTCTAAGTGTTGAACTGTGACCCTGGCCATCTGTCAATTAAAAAACCAAGAAAATCG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1765170 lncRNA upstream 6381 36137249 ~ 36141322 (+) True G1542415
TU1765146 lncRNA upstream 43570 36103866 ~ 36104133 (+) True G1542391
TU1765144 lncRNA upstream 46240 36101235 ~ 36101463 (+) True G1542389
TU1765123 lncRNA upstream 89578 36052878 ~ 36058125 (+) True G1542370
TU1765036 lncRNA upstream 207328 35909153 ~ 35940375 (+) True G1542292
TU1766351 lncRNA downstream 157012 36315403 ~ 36315649 (+) True G1543508
TU1766353 lncRNA downstream 158449 36316840 ~ 36367596 (+) True G1543510
TU1766362 lncRNA downstream 175604 36333995 ~ 36354936 (+) True G1543519
TU1766443 lncRNA downstream 303825 36462216 ~ 36462508 (+) True G1543598
TU1766557 lncRNA downstream 308612 36467003 ~ 36467227 (+) True G1543711
XR_005037454.1 mRNA upstream 62937 36082109 ~ 36084766 (+) False LOC110496111
XM_036952636.1 mRNA upstream 79596 36023893 ~ 36068107 (+) False LOC110496108
XM_021571808.2 mRNA upstream 79596 36041056 ~ 36068107 (+) True LOC110496108
XM_021571806.2 mRNA upstream 125930 35999199 ~ 36021773 (+) False LOC110496106
XM_021571813.2 mRNA downstream 6525 36164916 ~ 36193850 (+) False med30
XM_021571814.2 mRNA downstream 6582 36164973 ~ 36193850 (+) False med30
XM_036952643.1 mRNA downstream 696737 36855128 ~ 36931738 (+) False ext1c
XM_036952642.1 mRNA downstream 697413 36855804 ~ 36931738 (+) False ext1c
XM_036952644.1 mRNA downstream 697415 36855806 ~ 36931738 (+) False ext1c
TU1765133 other upstream 56097 36086776 ~ 36091606 (+) True LOC110496111
TU1765134 other upstream 59346 36076661 ~ 36088357 (+) False LOC110496111
TU1765069 other upstream 183998 35961201 ~ 35963705 (+) True G1542324
TU1765023 other upstream 277145 35870237 ~ 35870558 (+) True G1542282
TU1765003 other upstream 301507 35845814 ~ 35846196 (+) True G1542262
TU1766867 other downstream 605903 36764294 ~ 36765233 (+) True G1544007
TU1766999 other downstream 704532 36862923 ~ 36863183 (+) True G1544137
TU1767350 other downstream 897592 37055983 ~ 37056487 (+) True G1544455
TU1768221 other downstream 2034861 38193252 ~ 38204455 (+) False LOC110496158
TU1768223 other downstream 2034861 38193252 ~ 38204455 (+) True LOC110496158

Expression Profile


XM_036952638.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
End of interactive chart.

XM_036952638.1 Expression in each Bioproject

Bar chart with 14 bars.
XM_036952638.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.