RNA id: XM_021571819.2


Basic Information

Item Value
RNA id XM_021571819.2
length 2929
RNA type mRNA
GC content 0.41
exon number 5
gene id sdc2
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36759185 ~ 36793397 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGTATTTTCTTGCCGACTCTCTCTGCATACAGCAATGCGGTTGAGTTTGTGTAACGTGTGACATGGCCGAATCTTAGCGCGTTATAGCGGAACATCTGACTTGCGTTTCTACTACACTCAAGTGAATACAGGGTATAATTAAGTCCGGATTCAACTGTGAAACATCCAAGTCAAGTGTCCTACGCAGCAATTTGACTCgaactacatttttttttgtacgAAAAAGTGCGTGGAGGAATAACAAAACGCAACACGTATCCGGTGGGATTCCATTCTAGAGTAGAGAAACGCGAGGGTGCAAAGGGGAGAAGGGGTTAGTCACAAAcagaagaggaaagggagaggaggagaaagatttTGTATGTTTTTGCCGTATCGACACATTTTATTGAAGGAATAATGAGGAACATTTGGATAATTTTGACCCTCGGCATAACAGCCTTTCTCTCGGGGGAAAGGATAGCGGACGCGGCCAAGTCGTCCTCCGAAGTGGATGAACTTTTCATTGACGACACAGGGTCCGGGGGTTACTACCCTGAGGATGACGACGACTTTAACTCGGGGTCAGGATCAGGCACTGCTGAGGAGGTGATCGAGGAGGCGGTGACCGTGAACACGTTGTACATTGTGCCCAAAGCAGAACCCACCCAGGACTCCACCAAAGACTTCACTCCCAGAGTGGAGACAGACACGCCCAGAGAAGACCTGCCTGGGGAAACGCCCTGGAAGCCAGTCAGAACTGAGCCCCCAGTACCCGTCACCGAGGATCTACGCAAGAACCAGATCACCAGCACCCCCAGCTCCCCCCTGGAGCCCATCGATGTTCGCTCGGAAAACCTCTTCCAGAGGACGGAGGTGCTGGCAGcTGTCATTGCTGGTGGAGTTATTGGCTTCCTCTTTGccatcttcctcatcctcctcttggTTTACCGCATGAGGAAGAAGGACGAGGGCAGCTACGACCTGGGAGAGAGGAAACCCTCTGGGGCAGCCTATCAGAAGGCCCCAACCAAGGAGTTTTATGCATAAAGCCCCGCCCCCTCATGAGAAGATTGACAAATCGGAGTGACGGTTTATAGCAGTCCATGACAACGAGAAAAAACCTGTTCAAATAtactgtaacaacaacaacaaaaaataaaaagttaattGAGGAAAAATGACATAAAGGAAAGCTTTTGCATAGAGTATTGTAATTaagacattttctttttttttttaatgaaaagccAAGCATTGCTTATTTTATGGCATATCTCAGTGTATTTAAACATTTTGTGTATTATTTGAAAaggcaaaaaaatataaaaacatttaaaaaaatctgttaCGGTGATAAAAAACTATTGCATCTGTCTTCTGTCAAAGGAGCTGTTTTTAGTCACTGACTACTATTTAACTGTAGCAGTATGTATTTGTAAAGAAATGTTTTAAAAGTGGAAATAATTGAATATAATTATTCTGTATCAATCCTATAAAAAAATATTGTCCTAGCATGTCTGGCGTTGATCTTTAAAAGGTGTATTTcattcatttatatttttttctcagatgttaaaaaaaaaaaaatatatatatgcctTTTGTAGTTTTCATGAAGCTTTTTCATCTTCATATTAACGCTGATAACTGTCAATGTAAATGTTCTCCCTTCAGGTTACAATGTCAATCAATCTAGTTGAACTTGAgcgtttcatttattttttttgttcgtcttgtttgttttctttcaatGTTTGTTTTGGTCAAAACCATTTCTTATACAGCATACATGTTAAAACACAGTAATCGGTCTTAAAAAGCTAAGATGTGTCAGGGGCTCAAGAAAAACACAAGACTTACTTTACAGTATGTCTTGTGGatgttttttttaacattttaatttaattgCATACGACTTCTCATATTGCACATTCACCTCATTGCTTCTTTGCTGGTCTCGTTCAGCTCTGAGTGTTTACGATGTTTGGGGTTAAATTTGGCTCTGGGGCAATGTTTTCCCCTAGTTTACTCTGCCTGTCCCATCTGCCTTTGCTCCTCCCTCACATCCTCagcattctctccatctcctccatgtAAGCGGTCGGCCTCTCCCCTTTTTCTCACTCCACTGTGTTGCCAGTGTTTTTGTCTCCCCTGTGTCGATGGTTTAGCCCGGAGATCCTCGATTCTCAGAGAGCGTGAGGTTGGTTACCAGGAGCAAGACAGAGAAATACACCATGGGATTGACCTGTTGTTGCCATCCTCTCTCATTGAAACAGTCACCTCTGCATGAAAGGTACAACAGGTTGTGAAGTTGCCTTTTGAGCTGTACACAAATGTGAAGTAGACGTCATCTGAACTCCCAACCACCCACATGAGGCTATCCTCCCTgcaccccctcctccctcattccctcctccTTTCTGCTATACCCTCCAGCTTCTGCCtgcaatctctttctctctctctctctcatattatcATCATAGAAAAGATAGGTACTAAACTGCAAACCAAAACCCAAAGACACAGTATTCTCACCATTGCTTGAACGTATTCCCATTATGGCCACGTTACTTTCTCATTTTGTTTTCcttcatttttttacatttttttttatagcttTTAATTTTGTTAGAGACTTGACCATTGAGTCCAATTGCTTATTAGTATACAAAaagatatatattatatatataaatgcATATTCACAAATGTTTTAAACCTTCAAAGTGCCTACCATTTGGAAATGTACTTGCTCTCCCGGAGAGCATAAGGAGATGCATACGTTACACCAGGAGGATGATGATAATGACTGGCATTCTGTGAGCACAGATGACTGTAATGgtcaccacttttttttttttttttttaagtcttaCAAAAGCAGACAGTATTGTACCTATACGTtgaaacaacactactgaataaACATTGTGGCCTAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
K16336 SDC2, CD362; syndecan 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1766858 lncRNA downstream 96289 36661548 ~ 36662896 (-) True G1544000
TU1766711 lncRNA downstream 192736 36565643 ~ 36566449 (-) True G1543855
TU1766709 lncRNA downstream 193911 36564934 ~ 36565274 (-) True G1543853
TU1766706 lncRNA downstream 195654 36563299 ~ 36563531 (-) True G1543850
TU1766585 lncRNA downstream 273030 36485790 ~ 36486155 (-) True G1543739
TU1767144 lncRNA upstream 7162 36800559 ~ 36801923 (-) True LOC110496119
TU1767147 lncRNA upstream 17533 36810930 ~ 36811204 (-) True G1544269
TU1767149 lncRNA upstream 18329 36811726 ~ 36812025 (-) True G1544271
TU1767170 lncRNA upstream 53003 36846400 ~ 36846628 (-) True G1544291
TU1767171 lncRNA upstream 54800 36848197 ~ 36848424 (-) True G1544292
XR_002469516.2 mRNA downstream 11862 36744378 ~ 36747323 (-) True LOC110496117
XM_021571818.2 mRNA downstream 198472 36498812 ~ 36560713 (-) False angpt1
XM_021571817.2 mRNA downstream 198474 36498813 ~ 36560711 (-) True angpt1
XM_036951040.1 mRNA downstream 293827 36464570 ~ 36465358 (-) True abrab
XM_021571816.2 mRNA downstream 297724 36336515 ~ 36461461 (-) True samd12
XM_021571823.2 mRNA upstream 7119 36800516 ~ 36813545 (-) False LOC110496119
XM_036952641.1 mRNA upstream 30467 36823864 ~ 36835060 (-) True LOC110496120
XM_021571825.2 mRNA upstream 137903 36931300 ~ 36939648 (-) True zgc:114119
XM_021571827.2 mRNA upstream 181599 36974996 ~ 36987526 (-) False zgc:101785
XM_036952651.1 mRNA upstream 181599 36974996 ~ 36987526 (-) False zgc:101785
TU1766170 other downstream 746499 36010987 ~ 36012686 (-) True G1543346
TU1765944 other downstream 1255028 35452618 ~ 35504157 (-) True G1543128
TU1765953 other downstream 1262203 35495322 ~ 35496982 (-) True LOC118941140
TU1765900 other downstream 1409523 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 1579157 35175306 ~ 35180028 (-) True LOC110496081
TU1767721 other upstream 508111 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 1128758 37922155 ~ 37923334 (-) True ppt1
TU1769081 other upstream 1354193 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other upstream 1354193 38147590 ~ 38152232 (-) True LOC110496154
TU1769139 other upstream 1371853 38165250 ~ 38214049 (-) True G1546053

Expression Profile