Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU1766949 |
| length | 824 |
| lncRNA type | read_through |
| GC content | 0.45 |
| exon number | 2 |
| gene id | ext1c |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 36855128 ~ 36932244 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0015012 | heparan sulfate proteoglycan biosynthetic process | biological_process |
| GO:0031227 | intrinsic component of endoplasmic reticulum membrane | cellular_component |
| GO:0016758 | transferase activity, transferring hexosyl groups | molecular_function |
36,930,000
36,930,400
36,930,800
36,931,200
36,931,600
36,932,000
36,932,400
36,932,800
36,933,200
36,933,600
36,934,000
36,934,400
36,934,800
36,935,200
36,935,600
NC_048582.1
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| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1767004 | lncRNA | upstream | 56620 | 36874479 ~ 36874691 (+) | True | G1544142 |
| TU1767001 | lncRNA | upstream | 63195 | 36867899 ~ 36868116 (+) | True | G1544139 |
| TU1766997 | lncRNA | upstream | 69767 | 36861339 ~ 36861544 (+) | True | G1544135 |
| TU1766991 | lncRNA | upstream | 81610 | 36849463 ~ 36849701 (+) | True | G1544129 |
| TU1766985 | lncRNA | upstream | 88612 | 36842459 ~ 36842699 (+) | True | G1544123 |
| TU1767252 | lncRNA | downstream | 12512 | 36944756 ~ 36945009 (+) | True | G1544370 |
| TU1767259 | lncRNA | downstream | 17388 | 36949632 ~ 36949845 (+) | True | G1544377 |
| TU1767261 | lncRNA | downstream | 17779 | 36950023 ~ 36950579 (+) | True | G1544379 |
| TU1767286 | lncRNA | downstream | 32756 | 36965000 ~ 36965299 (+) | True | G1544402 |
| TU1767288 | lncRNA | downstream | 33240 | 36965484 ~ 36965684 (+) | True | G1544404 |
| XM_021571813.2 | mRNA | upstream | 737461 | 36164916 ~ 36193850 (+) | False | med30 |
| XM_021571814.2 | mRNA | upstream | 737461 | 36164973 ~ 36193850 (+) | False | med30 |
| XM_036952638.1 | mRNA | upstream | 772920 | 36147703 ~ 36158391 (+) | False | LOC110496805 |
| XM_036952639.1 | mRNA | upstream | 772920 | 36148476 ~ 36158391 (+) | True | LOC110496805 |
| XR_005037454.1 | mRNA | upstream | 846545 | 36082109 ~ 36084766 (+) | False | LOC110496111 |
| trnaa-ugc-136 | mRNA | downstream | 4214 | 36936458 ~ 36936527 (+) | True | trnaa-ugc-136 |
| XR_002469518.2 | mRNA | downstream | 34135 | 36966379 ~ 36967979 (+) | False | LOC110496123 |
| XR_002469520.2 | mRNA | downstream | 83516 | 37015760 ~ 37018672 (+) | False | LOC110496127 |
| LOC110496809 | mRNA | downstream | 200345 | 37132589 ~ 37141720 (+) | True | LOC110496809 |
| XM_036952654.1 | mRNA | downstream | 533547 | 37465791 ~ 37720841 (+) | True | LOC110496810 |
| TU1766999 | other | upstream | 68128 | 36862923 ~ 36863183 (+) | True | G1544137 |
| TU1766867 | other | upstream | 166078 | 36764294 ~ 36765233 (+) | True | G1544007 |
| TU1765133 | other | upstream | 839705 | 36086776 ~ 36091606 (+) | True | LOC110496111 |
| TU1765134 | other | upstream | 842954 | 36076661 ~ 36088357 (+) | False | LOC110496111 |
| TU1765069 | other | upstream | 967606 | 35961201 ~ 35963705 (+) | True | G1542324 |
| TU1767350 | other | downstream | 123739 | 37055983 ~ 37056487 (+) | True | G1544455 |
| TU1768221 | other | downstream | 1261008 | 38193252 ~ 38204455 (+) | False | LOC110496158 |
| TU1768223 | other | downstream | 1261008 | 38193252 ~ 38204455 (+) | True | LOC110496158 |
| TU1768508 | other | downstream | 1742783 | 38675027 ~ 38676004 (+) | True | G1545533 |
| TU1768490 | other | downstream | 1758194 | 38690438 ~ 38691269 (+) | False | LOC110496176 |
