RNA id: XM_036952652.1



Basic Information


Item Value
RNA id XM_036952652.1
length 3524
RNA type mRNA
GC content 0.49
exon number 6
gene id prdm1b
representative False

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37077027 ~ 37090104 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTTGGTGGCAGAGGCAAAGTGGGCACAGCACGGATACCCAAAGGATGTTACAGGGAGGAATtccctgtaaaaaaaaacaaaaaaaacaaagagaGAGTGACACGGGAAATAGTGGAAGAGAAGTAAAAGAGAGGAAGTGATGACCCAAGCAAAGAGATGATGATCCCACAACTAAATTACTAACAGTGACAGGCGTTTTCAGCAAAGAGTACATTCCCCAAGGAACTCGCTTCGGGCCCCTGCAAGGTGACATCTACAACAAAGACAACGTCCCCAAACAGGCCAACAGGAAATACTTCTGGAGGATCTATAACAGGGGGCGGCTACACCACTTCATCGACGGCTATGACGTGCGGAGCAGCAACTGGATGCGCTACGTCAACCCGGCGCGCTCGCTGTCCGAACAGAACCTGGTGGCGTGTCAGAACGGACGAGACGTCTACTTCTACACCATCCGGCCCGTGGAGGCCAATCAGGAGCTGCTGGTGTGGTACAGCCAAGAGTTTGCCGGGAGACTGTGCAGCCAACCGGGAGACGAGCTCAAACAAAAACACATATGCGGAGATGTCAGAGAATCTGAGTTCACCAAACAACACCTACCTCAGCCGACCCGGCTCCTGAAAAAGAAGGACGATATGAAGGACGAGAgagaagatgaaggagaggagagaatcgACGTAGAGGTGCTGGAGAGAGACACTCCACCCGACACGCCAGACGACCAAATCATGGATTTCAGCCAgaagatggagaaggaggaggtaaCCCAGGACCACCAGGGAGCCATACCCTCTCCTCAACCCGACCAGAGAGAGCCCAACCTGGCATCTCACAACTACGGTTTCCCTGAGCACCACCCTATTGCCCCCTCCCCACACCGtgacctccccctccacctccacggGCTCTACAGCCACAGAGAGGGCCTAGTGTCCTCCTACCCCCTCTACTACCCCTCCAGACCCCTTCAATCCACCCATCAGCTTCTCCCCACATACAGCAGGCCCCACtacccccacctcctcccccagTACTCCCCACCTTTCCCTGGGATGCTCCCCTCCAGAGGCCCCCTGCAGCACAGTAGCTACCTGGGTAGCGATGGACTTCCATACCCCTCCATGACTTACCAGCCTGGTCTGCTCCCAGTGCCTCTGCCCTACCCCGGAGCTATTCAGGGAGGGCTGAAAGAGAGGACCCCAAATATGTCACCTCCTCATGGAGCCCCAGCCACCCCAGAGCTCTCCCCCCTGCCCAAGCAAGAGCGCCAGATGCCCCTGCAGTCACCCTCTGGCTGTGAGGAGGCCATGAACCTCAGCCTGGCCATGCCAAAGAGCAGCCCCTCGCCACCCGCTGCCCCTCGGTACAAATCCCAACCCTACCCCCTGAAGAAACAGGACGGCAAGATCAAGTACGAGTGCAACGTCTGCCTCAAGACTTTCGGACAACTGTCCAACCTCAAGGTGCATCTGAGAGTTCACAGTGGAGAGAGGCCCTTCCAGTGTCACCTCTGTCAGAAGAGCTTCACCCAGCTAGCCCACCTGCAGAAGCACCACCtggtccacacaggagagaaaccacaCGAGTGCACGGTGTGTGACAAGCGCTTCAGCAGCACCAGCAACCTCAAGACCCACCTGCGGCTCCACTCAGGTGAGAAGCCCTACGAGTGCAAGCTGTGTAGCACAAAGTTCACCCAGTACATTCACCTGAAGCTGCACCGACGCCTGCATAGCGCCCGCGACCGCCCCTACCACTGCCCGCTCTGCGCCCACGCCTTCTTCCACCGCTTCTCGCTGCGCATCCACCAGCGCAGCTGCTGTCCTGCTTCCCAGGCCCACGCTAAACCCCATGCCCACGCCCACATCTGTGATCTGGTTGAGCGCTTTGACACCAGTCCCGAGGCCGACACGCTGCCTGAAGGGGCAGGGCCGGCCCAGGTGGAAGCTGCAGTGGAGCGCTGGGTGGCCCGGAGCTTGGAAGGGCGAGACGGCAAGGAGGACCAGAGTGAAGCCACCCTGCTGCTCAAGGCCCTCACGGCGGCCATTAACACCCCAGCTCCTCCCACCACCTCATCTCAAAGCCCTACTTCAGCCTATCAGGAGAGGGCTAGCGTGGTACGCTTCTACAACCGGCCAATGGTGAAGATGCAAGGGCAGTAGGGCAAAGTGGACGGACCCTTGTGGGGAGGGAATAAGAGAGACATTTTTAGGGTCTACCTCCTGAACGAAGGCAATTTAATGTTGCTAAGCCAGAGAACAATCGATAAAGTTGTCGccaaaaaaaaagtatttccCCAAGGGGAAGTGAGACTATTAAAAGCCAATGAGAGAGCAGCACCAAAACAAAGATCATTCCAAAGACATGGTGTCTTCTTATTAGCAGTGATGTGCTCGCAACTGTTTTCACTCAGGTTTACAGGTGTAATTTACATGGGATGTGTGAAAGAGTTTGCTGTACCCTCCTTTTTTTCTGAGTGCTGAGTGCTGTCAGCTATATTTGTTCAGTTGAGTGATTATTTTAATTGTTTGCGTAATGTTACATGTCTTGATACTTCCAAGGAGGCTTATTCCTTGGAAAACCACTGGACCATTGCCAGGAACTATTACTGGGATATTTCATGTTTTATTAGTGAACAAGtctttgtgtgtatttatttatttttgctcaaaGGGCAGACCAGGGAGCTTGAAACTATGTGAATGTATTTGCCAAAAAACAACAAGAATCAAAGAAAATATGAGGATAAACGGGGCTTATGTAGCATAACAATTTTTGTTTACTTAAATAGTGTATTCTAATGTAATGTAGCAAAATGGAGGAAAAAAAGCAAACTAAATGTAGTCAGAATGTTATAACGTTCCGGTTCGATGCAAATAGCTTCTAAGGACTTCCTGTGAGTCATCTAGCGATGTATTGGAGGTGCATACTTCTGCAAAGAaacttgcaaaaaaaaaaagaaaaaactttTGTTTTATccatttttttctttgtatttttgtatgttaaaacatttatattgcatttatatttgtaAGACATTTTTAacagtgctgtttttttttcATTGTGTTCCTGAATATATACTGATATAgcattgtgtttctagctctttCTCAGTTGTTATCTACCGACTGTCGATAAAGCTTTATTTCATTCGTCCTCTATACTGGTGGTAGATGTGAGCcagaaccaaatgtactgtagtctgtaTTGCACATACCCCTTAACTCAGTCTGCTCCTAGTATTACTGTATATATGCTCAGGTGAATGGCTCTAATCTCTTGTTATTTTACCAAAACTATCGACACAAGTAGCACTGGAAAAAGCCCGGAAGTAGATCCATGTGCACCAAGGTTTCTTATCCTAAAACAAAAATGGTGGAATAGTTTTAACATTGTTACTACTCTGAGTGAGTCGtgaatagattttttttatatatacatatttgtaGTTTTTGTACAGCATTTTGATGATACTTTCATAGTAAATGTCTCACATTAAACATATTGTTTCTCAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1767512 lncRNA downstream 54167 37018130 ~ 37022860 (-) True G1544600
TU1767501 lncRNA downstream 108383 36968223 ~ 36968644 (-) True G1544592
TU1767289 lncRNA downstream 111026 36965677 ~ 36966001 (-) True G1544405
TU1767287 lncRNA downstream 111795 36964973 ~ 36965232 (-) True G1544403
TU1767260 lncRNA downstream 127194 36949586 ~ 36949833 (-) True G1544378
TU1767673 lncRNA upstream 173341 37263442 ~ 37263860 (-) True G1544758
TU1767679 lncRNA upstream 177049 37267150 ~ 37267554 (-) True G1544764
TU1767711 lncRNA upstream 207122 37297223 ~ 37297532 (-) True G1544796
TU1767714 lncRNA upstream 207941 37298042 ~ 37298308 (-) True G1544799
TU1767729 lncRNA upstream 218137 37308238 ~ 37308443 (-) True G1544814
XM_021571826.2 mRNA downstream 20278 36990241 ~ 37056749 (-) True LOC110496124
XM_036952648.1 mRNA downstream 87350 36975586 ~ 36989677 (-) False zgc:101785
XM_036952651.1 mRNA downstream 89501 36974996 ~ 36987526 (-) False zgc:101785
XM_036952659.1 mRNA upstream 648740 37738841 ~ 37744121 (-) True LOC110496131
XM_021571835.2 mRNA upstream 664916 37755017 ~ 37757210 (-) True LOC110496132
XM_021571838.2 mRNA upstream 668687 37758788 ~ 37796944 (-) False LOC110496134
XM_021571840.2 mRNA upstream 668687 37758788 ~ 37796944 (-) False LOC110496134
XM_021571841.2 mRNA upstream 668687 37758788 ~ 37796944 (-) False LOC110496134
TU1766170 other downstream 1064341 36010987 ~ 36012686 (-) True G1543346
TU1765944 other downstream 1572870 35452618 ~ 35504157 (-) True G1543128
TU1765953 other downstream 1580045 35495322 ~ 35496982 (-) True LOC118941140
TU1765900 other downstream 1727365 35346895 ~ 35349662 (-) True LOC110496085
TU1765778 other downstream 1896999 35175306 ~ 35180028 (-) True LOC110496081
TU1767721 other upstream 211407 37301508 ~ 37302174 (-) True G1544806
TU1768955 other upstream 832054 37922155 ~ 37923334 (-) True ppt1
TU1769081 other upstream 1057489 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other upstream 1057489 38147590 ~ 38152232 (-) True LOC110496154
TU1769139 other upstream 1075149 38165250 ~ 38214049 (-) True G1546053

Expression Profile