RNA id: XM_021571835.2


Basic Information

Item Value
RNA id XM_021571835.2
length 2194
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC110496132
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37755017 ~ 37757210 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaagctGAACCTGCGTTGAGGCTGAAGTGGCCCCGGCAGGCTGAGCCCTTTGTGACGAAGACACTTCAGCAGGCGGCAGCTGAGGTCTGCCACTTCATTTTCCAGGGCTTTGTTCTCCAAGACACCGTAACTCCATGTTTAAGCTGTAGCGGTGAAACTTGTTTTGCATCAACCATCAAGCTTTGGTGCATTTGGAGGCATAGTTTGGATGCACTTGGACAAAGGCCAGAATTGGACCAAGCCTTTATTTGCGCtttatcaagacatcagtctttttgttttgtttaccttCTGTGGAACCTCTTTGCTCGTGGGACTGTATCAGTTGTTTTTGCCTTCCAGCGATGGCGTACATCTTCAGCGATGTCCCTTGATCGAGTATCAGGTTCTATTGGCATGACCCATCTAGGTAAGGCCACACCAAACCTGTGGGGTAATAGACACTTTTCATGTAATCAGCTCCGCGCTTGGGTTAGTGTGAGGTTACAGGGCCAGAACTGCTGACATCCAATTGTACCCTACGCACAAACCCACTGGGTCTGATGGTGACGTCTCCGAAGCTCAATCAATCCAAAATAGGGGAGCTGCCACAAGTGGCTGCACAGTCATTGGTTCTTAAATAATGAATCATTTCAATAGATAGAGGGAGGAAAGCAATggagtcttctctccctctgccacCACCTGTCACTCCGATCACTGGGGGGAAAAACCTTGAGTTAAAAAATAAAAGCTACATTGAAGACATCTGACCAGATGTTGAAAAGAAACGGAGACATAAGAAGCTTGAGAAAGGAAAGTAATTTCGGAAAAGGACCGTGAGTGACTCAAATTCAGGATTGTGAAAGGCCCAGACAGAGCAGGCAGGTATAGCAAAGGAGTGGGCCTTGAAGTGAGAAAGAAGACATAGACAAGGGTAAAGGTCAGTTTCAGGTGGTCAGAAGACATCAAGAGCAGCCATCATGGTCAACACAGGCATGCAATTGATCAGCTTCACCTGTGCGGTAACAGGTTGGGTCATGGCCATCGCTGTGACGGCCTTGCCTCAGTGGAAGGTGTCAGCCTTCATCGGCAGCAACATCCTCACCTCCGAGATCAAGTGGGAGGGCATCTGGATGAACTGCATCTACCAGGCCACGGGCCACATGCAGTGCAAGACCTACGACTCCATTCTGGCTCTGCCCCCGGACCTCCAGGCAGCTCGTGCCCTCATGTGTGTGGCAATTTTCCTGGGCTGGCTGTCCTGCACCGTGTCCTGCTGTGGAATGAAATGCACCACGTGCGCTGGTGACGACCGCCGCGCCAAGGTAGGCATCGCCCTCTCCGGCGGTGTGCTATTCATCCTGACGGGCCTGTGCGTGCTGGTGCCCGTCTCCTGGACCGCCAACACGGTGGTCCAGGACTTCTACAACCCCAAAGTGCCTGTCATGTACAAGCGAGAGCTGGGCCAGGCGATCTACCTGGGCTGGGCATCTGCGGTTATTCTGATGATCAGCGGGGCCGTGCTGAGCAGCACCTGCCCCCATATCGAGAGCGGAGGAGGGGAGTACCGCCGGGGTTACATGGGCCGGAGCTTTCCTAACACGCGCCCCTCCCCCCTCGCACCTGATCCTCCGAAACCTATCACCTCCAACAGCGTGCCCCTAAAGGAATATGTGTAGTCCAGAGAAAAGATGTGAAGAAGAATGTCAACAGGGTTGGAGTATGGGAAGGCGCAAGGTTGAGAAGGGGAAGTAGAAGGCTGGAGAAGGAAAAACTGTGACTGACTGTAGTGGAGGTGAGGTGTTGTGACTTGGAAGGTTTTTGAAGATGTGACGCATTAGATTTGAAACTCTGCCGTTCTCTCGCGTTCTTCTACCGTGATGCATTTTGATGTACTGTAAAtatttatttcaaatgtattttgtcACGGCCTCaattttatgtttatttatatatatataattgaggCTGTTTCCATAATGCCTATCATTATCCGCCTCATGTATTCCCTTATTGACTTCATTACACATTTATTACACTGTGATATTTGGTATTAGTGCGTGGACAGATCACAATATTCTGCCTGGAAGATACATCAATCACCATAAACACCTTTAAGATATTATGATTTTGTGACTTGTGGTGTGAAGGTTGGAGTGATTTATTTCACAATTCTTCACAGATGACTATTAAATCTGTGAAATAATTCA

Function

GO: NA

KEGG:

id description
K06087 CLDN; claudin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1768849 lncRNA downstream 34479 37718313 ~ 37720538 (-) True G1545820
TU1768813 lncRNA downstream 42133 37712418 ~ 37712884 (-) True G1545811
TU1768812 lncRNA downstream 42793 37712004 ~ 37712224 (-) True G1545810
TU1768811 lncRNA downstream 45055 37709592 ~ 37709962 (-) True G1545809
TU1768809 lncRNA downstream 48279 37706273 ~ 37706738 (-) True G1545807
TU1768898 lncRNA upstream 55533 37812743 ~ 37814324 (-) True G1545864
TU1768903 lncRNA upstream 61616 37818826 ~ 37820563 (-) True G1545867
TU1768930 lncRNA upstream 114221 37871431 ~ 37871638 (-) True G1545889
TU1768931 lncRNA upstream 116121 37873331 ~ 37873563 (-) True G1545890
TU1768933 lncRNA upstream 117189 37874399 ~ 37874619 (-) True G1545892
XM_036952659.1 mRNA downstream 10896 37738841 ~ 37744121 (-) True LOC110496131
XM_036952653.1 mRNA downstream 664915 37077027 ~ 37090102 (-) False prdm1b
XM_021571829.2 mRNA downstream 664916 37077027 ~ 37090101 (-) False prdm1b
XM_036952652.1 mRNA downstream 664916 37077027 ~ 37090101 (-) False prdm1b
XM_021571830.2 mRNA downstream 669295 37077027 ~ 37085722 (-) False prdm1b
XM_021571838.2 mRNA upstream 1578 37758788 ~ 37796944 (-) False LOC110496134
XM_021571840.2 mRNA upstream 1578 37758788 ~ 37796944 (-) False LOC110496134
XM_021571841.2 mRNA upstream 1578 37758788 ~ 37796944 (-) False LOC110496134
XM_021571842.2 mRNA upstream 1578 37758788 ~ 37796944 (-) False LOC110496134
XM_021571844.2 mRNA upstream 1578 37758788 ~ 37796944 (-) False LOC110496134
TU1767721 other downstream 452843 37301508 ~ 37302174 (-) True G1544806
TU1766170 other downstream 1742331 36010987 ~ 36012686 (-) True G1543346
TU1765944 other downstream 2250860 35452618 ~ 35504157 (-) True G1543128
TU1765953 other downstream 2258035 35495322 ~ 35496982 (-) True LOC118941140
TU1765900 other downstream 2405355 35346895 ~ 35349662 (-) True LOC110496085
TU1768955 other upstream 164945 37922155 ~ 37923334 (-) True ppt1
TU1769081 other upstream 390380 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other upstream 390380 38147590 ~ 38152232 (-) True LOC110496154
TU1769139 other upstream 408040 38165250 ~ 38214049 (-) True G1546053
TU1769405 other upstream 802439 38559649 ~ 38563318 (-) True LOC110496167

Expression Profile