RNA id: XM_021571842.2


Basic Information

Item Value
RNA id XM_021571842.2
length 6284
RNA type mRNA
GC content 0.52
exon number 17
gene id LOC110496134
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37758788 ~ 37796944 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTCCAAATCTACAGGATCTGTTTTAAATCACTCAGAAGACAACGCATCCACAACACTGCTGGACATTTACGCATTATATTCCCTTTCTTAAATTAGCCCCCCTCAGCTTCGCGATACCGCCCCCAATTTCAGTGTCGGTACGGAGCCGCCAGGCcgggacagagacggagagagagcccTCGGCCATGGAAGCGCTCGGACCCGacCCCCCTATAGGCCCGCCGGcccccacctccctcttccaGCCCCCACGGAGGCCTGGCATGGGCACCGTGGGGAAGCCCATCCGCCTGCTGGCCAACCACTTCCAGGTGCAGATTCCCAAGATTGATGTCTATCACTACGATATCGACATCAAGCCTGAGAAACGGCCAAGGAGGGTTAACAGgGAGGTGGTGGACACCATGGTTCGCCACTTCAAGATGCAGATCTTTGGTGATCGACAACCGGGCTACGACGGGAAGAGAAACATGTACACGGCCCATCCACTACCCATCGGGAGAGACAGGGTGGATCTGGAAGTAACTCTGCCGGGGGAGGGTAAGGACCAGACGTTCAAGGTGTCTCTGCAGTGGGTGTCAGTGGTGAGCCTGCAGATGCTCCTGGAGGCCTTGTCAGGCCACAACGAGGTCCCCGAGGACTCTGTTCAGGCCCTGGATGTCATCACCCGCCACCTGCCTTCCATGAGGTACACCCCAGTGGGGCGTTCCTTCTTCTCCCCTCCGGAGGGCTACTACCACCCCctgggcggagggagggaggtgtggtTCGGCTTCCATCAGTCGGTCCGTCCTGCCATGTGGAACATGATGCTCAACATCGATGTCTCCGCCACTGCTTTCTACCGTGCCCAGCCCGTGATTGAGTTCATGTGCGAGGTGCTCGACATCCAGAACATCAACGAGCAGACCAAGCCACTCACCGACTCCCAACGCGTCAAGTTCACCAAGGAGATCCGAGGTCTGAAAGTTGAGGTCACCCACTGTGGTCAGATGAAGAGGAAGTATCGCGTGTGCAATGTCACTCGCCGCCCCGCCAGCCACCAAACGTTCCCCTTACAGCTGGAGAATGGCCAGGCCATGGAGTGTACCGTGGCTCAGTACTTCAAGCAGAAGTACAGCCTACAGCTGAAATACCCCCACCTGCCCTGCCTACAAGTGGGGCAGGAACAGAAGCACACCTACCTACCCCTGGAGGTTTGTAACATTGTGGCCGGGCAGCGCTGCATCAAGAAGCTGACAGACAACCAGACCTCCACCATGATCAAAGCTACAGCACGTTCTGCACCCGACAGGCAGGAAGAGATCAGCCGACTGGTCAAAAGCAACAGCATGGTGGGCGGTCCCGACCCTTACCTGAAGGAGTTCGGAATTGTGGTGCACAACGACATGACCGAGGTGACGGGCCGAGTCCTCCCAGCACCCATGCTGCAGTATGGGGGACGGGTTAGTACCGACACTGGGCGGGACTGTGGCAGGGGACTCTCTCCGCAGAACAAGACCGTGGCCACGCCCAACCAGGGCGTGTGGGACATGCGGGGGAAGCAGTTCTACGCCGGGATGGAGATCAAGGTGTGGGCCGTGGCCTGCTTCGCCCCACAGAAACAGTGCAGAGAGGACCTGCTCAAGAGCTTCACAGACCAACTGAGAAAGATCTCGAAGGATGCCGGTATGCCCATCCAGGGCCAGCCGTGTTTCTGTAAATACGCCCAGGGAGCGGACAGCGTGGAACCCATGTTCAAACACCTCAAGCTGTCTTATGTGGGACTGCAGCTTATCGTGGTCATCCTGCCCGGCAAAACCCCTGTCTACGCGGAGGTGAAGCGGGTAGGAGACACTCTCCTGGGCATGGCCACTCAGTGTGTCCAGGTGAAGAACGTGGTGAAGACATCCCCCCAGACCCTCTCCAACCTCTGCCTCAAGATCAACGCCAAGCTGGGGGGCATCAACAACGTCCTGGTGCCCCATCAGAGACCCTCTGTGTTCCAGCAACCCGTCATCTTCCTGGGGGCAGACGTCACTCACCCTCCAGCCGGCGACGGCAAGAAGCCCTCCATCGCGGCGGTGGTGGGCAGCATGGACGGCCACCCCAGCCGCTACTGTGCCACGGTGCGCGTGCAGACGTCGCGCCAGGACCTGTCCCAGGAGCAGCTGTACAGCCAGGAGGTCATCCAGGACCTGACCAACATGGTGCGCGAGCTGCTGATCCAGTTCTACAAGTCCACGCGCTTCAAGCCCACCCGCATCATCTACTACCGCGGCGGCGTGTCCGAGGGCCAAATGAAACAGgTGGCGTGGCCAGAGCTGATTGCCATCAGGAAGGCCTGTATCAGCCTAGAGGAGGACTACCGACCGGGCATCACCTACATCGTGGTTCAGAAACGCCACCACACCCGCCTCTTCTGCTCAGACAAGACGGAGAGAGTTGGAAAGAGTGGCAACGTCCCAGCCGGAACCACGGTGGACAGCACAATCACCCACCCCTCAGAGTTTGACTTCTACCTGTGCAGCCATGCTGGGATCCAGGGCACCAGCCGGCCCTCCCACTACCACGTCCTGTGGGACGACAACTGCTTCACAGCCGACGAGCTCCAGCTGCTCACCTACCAGCTGTGCCACACCTACGTCCGCTGCACCCGCTCAGTCTCCATCCCCGCGCCAGCCTACTACGCCCGGCTGGTGGCCTTCCGCGCCCGCTACCACCTGGTGGACAAAGATCACGACAGTGCGGAGGGCAGCCACGTGTCGGGCCAGAGTAACGGTCGGGACCCCCTTGCCCTGGCCAAGGCAGTCCAGATCCACTATGACACTCAGCACACTATGTATTTCGCCTGAGCCACGTGAGCAATGTGTGCAgttctgtcctctatctctcctctctctctttttgccaGTCTTTCTCTACCTTTGTCTTGCGTCTTGATGTGCACCAAAGCGGTTCGAAGCCAGTGAAGTGTGCCAGTGAAGTATTTTCCTTTTTGGGAAAAACGACATCCGGCGTTCCCGATCGAAGCCGCCCTCTACCAGCAATCTGGCACCGAGAGACCGTTGGGGTTTCCGATGCacagagaaaacaaacaaaaaacacaagttgagccattttttgggggggagggagtgggggtTGTTTGTTTTTTGAATGtctcttgtttttgaaagatacaCTGAGCAATGGAGCGGACTGATGCCAATTGTCAGTGGCAGCTCTTAGCTCTCCCAGCTAAGCAGGACTACTTTTTACCTCAAAGCCCTTTCGGGGCGAAAATCCGTCAAGTTCTTGGGTTGGGGGGGTCGTGGGGGGTTTGCATGGAAACATGTGTGGAGAGGATCTTTTgagaatgatatatatatatttttttcttttatGATTGTGTTTTAACTTTCTCTTCTTCAGTCTTTTACAAGCGAGGTCACCTGGGTATCCATACCCATTAGTCTTCTCCCATTTAGCGAAGAATTAAGTGCTTGAGTGtgagcgtgtttgtgtgtgtgtgtgtgtgtgtgtttgtgtatatacgtgtgtgtgtgtgtgtttcatggcaGGCCACTGAATTGTAAAGGGAAAATCAAGAACTGCTGTAAATGCCTCagatttgatgtttttttttttatatattcacACAtgacatatatataaatataaatatttacatCTATAGAACAGATTGAACTATACAGGCTTCACAGAAGCCGGTGGGTGTATGTGTAGCAGTAGCAACCGTGGTTTAGCCGATGTGATTGACTCGGCATTGGGACCTATTGAATGGTTGAGAGCTTTTGCGGGGTTACGGCATTGGACTAAGCCGCCTTATTTGGTGCCCCATGTGAGGAAGGGGATTCATCCCTTAAACCTGTTTGTCTGAATGGTTATGACCATTGTTAGGGCGGCGCACGTTTTTTTAGCAAGGCGCTAGTCGTCTGAATTTTTCGGAGGCGGAAAACCCATTCGCTTAACTTTTGGGGTCTCCTTTGCTACCGGCCAATTCATTGCACTGACCCGGGACGCTAGGCAAGCAACAGAGGGCACTCTCTCTTACCTTTTTATGCATTTATACATCAGAATCAAAAAGCAGAATTTGTAAGAGTTTAATATAAAACCGTTTTGTGGCTAATCTTAACTGTTGTTCAGACTTAGTAGTTAtatttgatgttgttgttgttatctaCGATTATGATAATTATCAGACTGGCAGCAATCGGATGTGTAGTTATGAGATCAGGGTAAGAGTGGCTGGGTTTAGATTTGCACACTTTGGTAGCATTCTGGCCTACGGTGGAGGGAGGCCCAAGGTGTATCGGTTTATGCTCCCTTCTGCTCCTCAGTGATGTAgtagggaagggtttggctgtGTTCTCCAGTAGGAAAGATCTCTGTTGAGCTATCACCGTTACCCCTGACTGGTAAAACAGGAGGCAGAAGAGTACTGTTGGCAGCAGGGGATTTCGGTTCGAAATGGCAGAAAGGTGACAATCAGAGCTGGCATTAGGAAGAAACTGGGACCGAGCGAGTGGTAAAAAGAAGTATGCAATAGGCAATGAGTAGAATTTTTAGAACTTCATAATGTGTATCTAtgactgtttgtgtgtatttgaACAAGTATATCTAAGTCTaaacttttggtgttttttattttttaaattaaataaggTTTTGAACAGCGGATATGAATTGACATAAAGCATAAACACTGCCCATGGACCTAAGAACACCTGACCAGTCACGACTTATTGCCGTGCAAGACTGCGgtgaggatggggggggggtcgACTGCGGTGCACCCACCTCGCCAGGGGGGTCGGCTCAGTGAAAAATCCTTTTGTAATAAACCATCCGTGAAGCACCAGGTTTGCTATGAATGAGTTTGAGCCCCTACCTGTCGAGGGCTTGGGCGCCGGCCTGTCGAGGGCTTGGGCGCCGGCCTGTCGAGGGCTTGGGCGCCGGCCTGTCGAGGGCTTGGGCGCCGGCCCGTGGGAGCGAAGCATGATGGGGTTCCAGGCATTGCATGCAATAAGTTTTGAGGGGCGGGGCTGAGCTGTTGAAGACGTGCACTAGTATTCCTACGGGGAAAGGGGGCTGCATAGAGCCTGGTGTTGTAGTCTGGCCCTCTGTGGGTGTGACCAGACTGGAGGAGTGTGCAGGATGTGGGTGTGGTCTCCTAGCAGGGGATCCAAAAGGCGGTGATGACTCCTCAGTTTTCAACATATTATCATTGCAAAGCAATATTAACTCTAAATCCAGTTTTCGAATGTGGAAAAATGTATAATTCCTCTTGTCGACGTGGCTGTTGGTCTGCTCTCTGTCGCCGTTTCTGTAActcattttttttgttgcctgtATCAATCAGTGGGAATGTGCATTCGGTGGACTAGCTCTTTAGGCACTGAGAAAAAAGGTCAAAACATTTAGACTTTTCTCACCTGCATGCCAGAGTATTGtccctaaaaaaataaaaaataaaataaactctttAGAATCAAGCGAGACAGAAGGAGAATAAATATTGGGTAAATGTATATGAATTTAGTGAGACTGTTTTAGGCTAGCAATATTGTCCAGTCTCTTCAAGATGTTTTTGAAAGATTCCTACACAAATGTcagttaaaataaaaaaacggaGGCACAGGCCACTGGAGGTTGAGCGTTCGAGCCTTTACATCGTGACCCGAAGACAAACGAGGTACTTTCTTCAAACGTGGGCCCGGTAAAGACTTGACCCCTCGCCCCCTCACAGGCCCCAGTGTAGCGTCCATTTAGGCCTCCACTTCCTGGTTTGTGCCCCTGCCACGCCTCTCGGGGCTCCCTAGTCTCGTGGCGCCACCCTGCTGGCCACCCACACAAGCGCACTTCCTCTCTGTGGGGGGCCTCGCCCAAGGCGTCCACGGCCACAGGAATACCTCTTTTTAACATTTTTAACAATCCATTCTTTCTGTGCCCCGTTTGAAAGAGagcatgatttattttttaattcctCTTTGATATAATATCTACAGATTTGTTATTTGACATTGTAAGtactttttttttgttctttATTCTCGTGTGTAGCTCTGCTGTTTTCTGCTAGTGGTCTGAGCTGTGTGACTGTCCAACAGCAATAGAACAGTACCCTGTCTGACCTGCTGGGGAGGGGTGGGGCTTCCTCAGGCCCCTCCCACAAGGGTGCCCAATCACTTGCTGTATTGCTATGTGACatgttttaaacttttttttttttttagcctgCAGGGAATATTTGTGTAATTGTGTAAAGTAATAAATTGGTATTTTATGCCTATATCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1768849 lncRNA downstream 38250 37718313 ~ 37720538 (-) True G1545820
TU1768813 lncRNA downstream 45904 37712418 ~ 37712884 (-) True G1545811
TU1768812 lncRNA downstream 46564 37712004 ~ 37712224 (-) True G1545810
TU1768811 lncRNA downstream 48826 37709592 ~ 37709962 (-) True G1545809
TU1768809 lncRNA downstream 52050 37706273 ~ 37706738 (-) True G1545807
TU1768898 lncRNA upstream 15799 37812743 ~ 37814324 (-) True G1545864
TU1768903 lncRNA upstream 21882 37818826 ~ 37820563 (-) True G1545867
TU1768930 lncRNA upstream 74487 37871431 ~ 37871638 (-) True G1545889
TU1768931 lncRNA upstream 76387 37873331 ~ 37873563 (-) True G1545890
TU1768933 lncRNA upstream 77455 37874399 ~ 37874619 (-) True G1545892
XM_021571835.2 mRNA downstream 1578 37755017 ~ 37757210 (-) True LOC110496132
XM_036952659.1 mRNA downstream 14667 37738841 ~ 37744121 (-) True LOC110496131
XM_036952653.1 mRNA downstream 668686 37077027 ~ 37090102 (-) False prdm1b
XM_021571829.2 mRNA downstream 668687 37077027 ~ 37090101 (-) False prdm1b
XM_021571851.2 mRNA upstream 47092 37844036 ~ 37853817 (-) False LOC110496137
XM_021571852.2 mRNA upstream 47865 37844809 ~ 37853593 (-) False LOC110496137
XM_021571850.2 mRNA upstream 47865 37844809 ~ 37854732 (-) True LOC110496137
XM_036952664.1 mRNA upstream 125209 37922153 ~ 37929337 (-) False ppt1
XM_036952666.1 mRNA upstream 125209 37922153 ~ 37929643 (-) False ppt1
TU1767721 other downstream 456614 37301508 ~ 37302174 (-) True G1544806
TU1766170 other downstream 1746102 36010987 ~ 36012686 (-) True G1543346
TU1765944 other downstream 2254631 35452618 ~ 35504157 (-) True G1543128
TU1765953 other downstream 2261806 35495322 ~ 35496982 (-) True LOC118941140
TU1765900 other downstream 2409126 35346895 ~ 35349662 (-) True LOC110496085
TU1768955 other upstream 125211 37922155 ~ 37923334 (-) True ppt1
TU1769081 other upstream 350646 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other upstream 350646 38147590 ~ 38152232 (-) True LOC110496154
TU1769139 other upstream 368306 38165250 ~ 38214049 (-) True G1546053
TU1769405 other upstream 762705 38559649 ~ 38563318 (-) True LOC110496167

Expression Profile