RNA id: XM_021571850.2


Basic Information

Item Value
RNA id XM_021571850.2
length 1422
RNA type mRNA
GC content 0.60
exon number 7
gene id LOC110496137
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37844036 ~ 37854732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACTAACTCACTCTTCAGTCTACCTTCAGCTCGTCTCTATCCATCCTCCTGGTATCCGCTATAACCTCCTGCTCAAACCTAACTCCAATCTCTGCAACCCAGCCGCCCTTTACAACAACGTCATCATGCTTTGGAAATCGCGAACGAAGACTGAGCCCTACTGTCTTCAGGACCGCGCAGACGGACTGACCGGCTCCTCGCCGAGTGGGCGACTGTCTCAACTCTCCTCGCTGAACCAGGCAGCGTACTCCTCGGCTCCCCCGCTTTGCCACACACCGGCCTCTGATTTCCAACCTCCGTACTTCCCCCCTCCATACCCACAGTCTTCGCTCTCATACTCCCAGAGCCAGGACTCTGCATACTCTCACTTATCGGACCCCTACAACTCCATCAACTCCATCCATCAGCATCAGCAAGCGGCATGGCACTCGCAGAGATCGCGGTCGGACGAGGGGGCGCTATTGTCACAGTCACACCGGGCTTTAAGCCTCGACCCCCGTCGGGAGTACCCCGGTGTACCCCGGCTTCTCCACGGACTCGGGGAGGGTGCCGCAGCTCTAGGAGACGGTCCTCTTGGAATGCATATTGGACATCACGGACTGGAGGACATGCAGGGAATGGAGGAGGGATCAGCCTTGGGCATCCTGGACCACTCCGTCATTAAGAAAGttccCATCCCCTCCAAGTTGAACGGCTCGTCCCTGTCGGCTCTCCACCTCAGTAAGGATGGTCTAGGGATTGGTTCCGTGTCCAACCCAGGGGAGGTGTTCTGCTCCGTCCCCGGCCGCCTCTCCCTCCTCAGCTCCACCTCCAAGTACAAGGTCACCGTGGGGGAGGTGCAACGACGTCTGGCCCCGCCTGAGTGCCTGAACGCTTCCCTGTTGGGCGGAGTCCTCCGCAGggcAAAGTCAAAGAATGGCGGGCGCTGTCTGAGAGAGCGTCTGGAAAAGATCGGGCTTAATCTCCCCGCCGGGCGACGCAAGGCCGCCAACGTCACCCTCCTGACGGCTCTAGTGGAGGGTGAGGCAGTCCACCTGGCCCGTGACTTTGGGTATGTGTGCGAGACGGAGTTCCCTGCCAGAGCGACAGCAGAGTATCTGTGTAGGCAGAGTGACCCCGAGCAGCTTCCCACACGACGCAGTATGCTGCTGGCCACCAAGGATATCTGCAAGGAGTTTGTGGACCTGATGTCCCAGGACCGCTCTCCTCTGGGGGCGAGTCGTCCCAACCCCTGTCTGGAGCACGGGGTCCAGAGCAATCTCACCCACTTCAGCCTGCTCACCCACGGCTTCGGTACCCCAGCTATCTGCGCCGCCCTCTCCGCCTTCCAGAGCTACCTGGTGGAGGCCATCAAAATGCTGGACAAGGACCAGGGGGGTGGCAAGGGGCACCACGAGAAGGAGATGAAGCACCGCAAATAG

Function

GO: NA

KEGG:

id description
K09180 TFAP2N; transcription factor AP-2, invertebrate

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1768903 lncRNA downstream 24246 37818826 ~ 37820563 (-) True G1545867
TU1768898 lncRNA downstream 30485 37812743 ~ 37814324 (-) True G1545864
TU1768849 lncRNA downstream 124271 37718313 ~ 37720538 (-) True G1545820
TU1768813 lncRNA downstream 131925 37712418 ~ 37712884 (-) True G1545811
TU1768812 lncRNA downstream 132585 37712004 ~ 37712224 (-) True G1545810
TU1768930 lncRNA upstream 16699 37871431 ~ 37871638 (-) True G1545889
TU1768931 lncRNA upstream 18599 37873331 ~ 37873563 (-) True G1545890
TU1768933 lncRNA upstream 19667 37874399 ~ 37874619 (-) True G1545892
TU1768920 lncRNA upstream 46076 37900808 ~ 37901659 (-) True G1545879
TU1768983 lncRNA upstream 104453 37959185 ~ 37963415 (-) True G1545922
XM_021571842.2 mRNA downstream 47865 37758788 ~ 37796944 (-) False LOC110496134
XM_036952664.1 mRNA upstream 67421 37922153 ~ 37929337 (-) False ppt1
XM_036952666.1 mRNA upstream 67421 37922153 ~ 37929643 (-) False ppt1
XM_036952665.1 mRNA upstream 67421 37922153 ~ 37930745 (-) False ppt1
XM_021571870.2 mRNA upstream 123385 37978117 ~ 37992369 (-) True LOC110496145
XM_036952672.1 mRNA upstream 266844 38121576 ~ 38132547 (-) False LOC110496154
TU1767721 other downstream 542635 37301508 ~ 37302174 (-) True G1544806
TU1766170 other downstream 1832123 36010987 ~ 36012686 (-) True G1543346
TU1765944 other downstream 2340652 35452618 ~ 35504157 (-) True G1543128
TU1765953 other downstream 2347827 35495322 ~ 35496982 (-) True LOC118941140
TU1765900 other downstream 2495147 35346895 ~ 35349662 (-) True LOC110496085
TU1768955 other upstream 67423 37922155 ~ 37923334 (-) True ppt1
TU1769081 other upstream 292858 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other upstream 292858 38147590 ~ 38152232 (-) True LOC110496154
TU1769139 other upstream 310518 38165250 ~ 38214049 (-) True G1546053
TU1769405 other upstream 704917 38559649 ~ 38563318 (-) True LOC110496167

Expression Profile