RNA id: XM_036952669.1


Basic Information

Item Value
RNA id XM_036952669.1
length 7961
RNA type mRNA
GC content 0.53
exon number 28
gene id LOC110496152
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38064570 ~ 38087903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTGACATCGGGTTTTTGCGGGGAAGTGATCAACGTGCCTTTTAAAATTGATAAACGGAACAGTTTAATAGCCCTGCAGTACAGtatggtttagaaactctgttGTAGCTTGCTAGatgtcaaacaggaaatgacatAGCCAGGTCTGCCATGTTTACGCAGGCGACGGGCGTGTGTTGTGCGAGTTTCTTTGATGAGCTCTGCAGAGTGAAAATGCAAAGGACTTGACTTCTGTAAAGTTATAACTCACCGGCATTGGTATAATCGAAGTTAATGTCTTATGCATGGAAAAGCTTAAGAACCTTATTCGGTAATTCAAATTAAGACTCGTTTTAGTAGGCTACATATCGTtgctatttagctagctagctttctccACAACAAGGAGGCGGGCGGAAGTAGCTAATGCATGGTAGCTAGCTGGTAAGCCTCAGTTCCGTTTTTAGTATAGTTTGGTGGACATTGGTTAACCTATATTGTGAGTGAGTGACAATAAGAGCTAGCCGACTTTCGCCGTAATAAGCAAGCCATGGCTGAATCCCAGAAAGCTGACCATTCAGAGCATAAAGGCGAGACAGAGCAGCCATCTCAGGCTGGAGCATCAATGGATTCAGTGGACCCTGGAGCCTCACACAGCAATACAGCCTCGGCAGATGGGAACAATGGGGATGATGCTACCAATGCAGTCAGTGCATGTTTCTCCTCAATTATAGACGGGGCAGGGGATACTGGTAATTCAGGACATGCGAGGGAAACCGATGCAGAGGATTCACAGATGGTGGAAGAAACAGTAAAAACAGATGCCTTGCTGACTGTGGTAGAAATGGACAGTAAAGAGGATTCACAGACTGAAAGAGAAACAGCCAGTGTGGATGTTCCacagatggaaagagaaacagCCAGTGTGGATGTTCCACAGACGGACAGGGAAACAGCCAGTGCGGATGTTTCACAGACGGAAAGAGAAACACTCAGTGCGGATGCCTCACAGACGGAAAGAGAAACACTCAGTGCGGAAGCCTCACAGACGGAAAGAGAAACAGCCAGTGCGGATGCCTCACAGACGGAAAGAGAAACAGCCTGTGCGGATGCCTCACAGACGGAAAGAGAAACGGCCAGTGCGGATGCCTCACAGACGGAAAGAGAAACAGCCCGTGCGAATGCCTCACAGATGGACAGAGAAACAGCATGTGCGGATGCCTCACAGACGGACAGAGAAACAGCCCGTGCGGAtgcctcacagacagacagagaaacagcccGTGCGGATGCCTCACAGACGGACAGAGAAACAGCCCGTGCGGATGCCTCACAGACGGACAGAGAAACAGCCCGTGCGGATGCCTCACAGACGGACAGAGAAACAGCCCGTGCGGAtgcctcacagacagacagagaaacagcccGTGCGGATGCCTCACAGACGGACAGAGAAACAGCCCGTGCGGATGCCTCACAGACGGACAGAGAAACAGCCCGTGCGGATGCCTCACAGACGGACAGAGAAACAGCCCGTGCGGATGCCTCACAGACGGACAGAGAAACAGCCCGTGCGGATGCCTCACAGACGGACAGAGAAACAGCCCGTGCGGATGCCTCACAGACGGACAGAGAAACAGCCCGTGCGGATGCCTCACAGATGGACAGAGAAACAGCCCGTGCGGATGCCTCACAGACGGACAGAGAAACAGCCTGCGGGGATGCCTCACAGACGGACAGAGAAACAGCCCGCGCGGATGCCTCACAGACGGAAAGAGAAACACTCAGTGCGGAAGCCTCACAGACGGACAGAGAAACAGCCCGTGGGGATGCCTCACAGACGGACAGAGAAACAGCCCGCGCGGATGCCTCACAGACGGACAGAGAAACAGCCCGCGCGGATGCCTCACAGACGGACAGAGAAACAGCCCGCGAGGATGCCTCACAGACGGACAGAGAAACAGCCCGCGCGGATGCCTCACAGACGGACAGAGAAACAGCCCGCGCGGATGCCTCACAGACGGACAGAGAAACAGCCCGCGCGGATGCCTCTCAGACGGAGACAGCCCGCGCGGATGCCTCTCAGACGGAGACAGCCCGTGCGGATGCCTCTCAGACGGAGACAGCCCGTGCGGATGCCTCTCAGACGGAGACTGCCCGTGCGGATGCCTCTCAGACGGAGACTGCCCGTGCGGATGCCTCTCAGACGGAGACAGCCCGTGCGGATGCCTCTCAGACGGAAACAGCCCGTGCGGGTGCCTctcagacagtcagagagaaaattGGGACAGATGCACCCCAGACTGTGGAAAAAATAGGCAGTACAAGTGGTTCACAGACTAATGGAGAAACAGACATACCCCTGGACATGGGAGTAGTGGATGCTGACGATGAGATGGAGGTTAATGCTATCAAAGTGGAGGATGACCAGATGCAGGAGGAAGACAACTTGGAGGGGATGCCTGTGATAACAGCTGTGGAAGAGGAAGGCAAAATGGTTGCTTTTAGCAGCAACTCCCTGGATCATGGGGATGAGGTGGAGAAGATGGACACGGGGACAGACTCACTGACAGAGAACGAGGTAGAGGAACCCAGCAAGACCGGGCAAGTGGAGAAGACTAATTCCATGCCTTCTATCATGGATACAGTCTCCATGACAGGAGACACAGAGCAACCTGCTGAGGAGACCAGCGTTGTGAAGGCTAGCGGCTCGTCTCTGCCTATGGAGGAGGACCAATCTGAAGATGTCAAACCGTTTCACCCCAGTCCCACCACCTCTAGCGAAGCTATTCACCCACAGAACAGTGAAGGCATCGACTGTCCTGCAGGGCTGGAGAATGGAGTGGCAGGACAGCCAGTCAAAGTTGTGGCTTCTGCCCAGTTGGCAGCTGAGCCTGTGTCCACCAGCGTGGAAACCATCTCCATGGTCAAGGTGAAGGATGAGCCCGTGGACGAGGAGTATGATCAGGCCCTGGCTCCAGCAGTCCTCTCAGAGGGcgtcaaggatgaaccagacgcaGCAGAGGAGTTGAAAATCAGCAACGTCTTCTCTGTGGGCGGCTGCCCAACTACGAACGCCGTATCCACGCCAGTGGCTGCCCTGCCTAAGACTGTAATACCTGCCCCagcctcttcctccatccctccgctGATCCCCATGGCTATGCGGGTGGCCTGCTCGGCCTGTAAGAAGGTGCTGCTGAAGGGCCAGACGGCCTACCAGAGGAAGGGCTCCTCGGACCTCTTCTGCTCCACGTCCTGCCTCACCTCCTACAGCCCCCCGCCCGTCAAGATGACTGGCCCAGCCAAGAAACCCTGCCACTACTGCCTCAAggagaTTGCTAACCCCAAGGACGTGATCACAACTCCTGTGGACACCATGGGCACAGTGAAGGACTTCTGTAGCCAGACCTGCCTCTCCTCCTTCAACTTCAAGAGGAACTCTGccgtctccactctctcctcctccctgtccaccATGACAGGGGCCGTCAAGTGCAGCATGTGCAAGAAGGCCTGCGTTAGTAAACACGAGGTGATCTTCCAGGGCAGTATGCACAAGCTGTGCAGCGAGGTGTGCTTCACACGCTTCCGCTCCACCAACAAGCTGTCCATGAACAGCTGCCAGAGCTGCAACAACTACTGCTACGGCAAGGTCACCGTGCTGGTCGTGCAGGGGGTCAATAAGACCTTCTGCAGCGACGGCTGTGTCGCCACCTTCAAACAGAAAGCTAAGAAGCCTGTGGCATGTACTATGTGCCGCAACTTCCGCTCACCGGTGGATATGGTCGACAGCGCCGACTCTGAGGGCAAGCTGGAGATGTTCTGCTCTACTGGCTGTGTTACAGCCCACAAAGTACAGACTGTCAGCTCCTCGGGTGCTCGGGTAGAATGCAACACCTGTGGTCAAAAGGTGGTGCCCTCCTTCCACCTGGCCATGTCGGACGGCTCCATCCGGAACTTCTGCACCATGAACTGTGTCGTCACCTTTCAGGATCAGTTCAATAAGAGCAACTCCCAGAGCCAGATTAATGTGGCCCCCAGCACAGGGTCCACAGCTCCGCCCGCGGCCCAGACCAGGGACAAGGTATCCCAAGGGACCCGTCTGCCCTGCTTCCAGTGCCACCGCCTCTTCTCCTCCAAGCCCGAGCTCATTCAGTTCAAGGATAAGATGGTATTCCTCTGTTCGGTAAATTGCTCTGAGGAGTACAGGAAGATCAACTACGAGATGGCACGCTGCGAGTACTGCAAGATTGAGAAGCCAGCCAAGGAGGTCAAGAGAATCAATAAGAGGGACTACACCTTCTGCAGCGAAGGCTGTAAGCTGCTCTACAAGCACGACCTGACCAAGCGCTGGGGGAAACACTGCAAAATCTGTGCCTACTGCGCCTCCACTGCGCAGAAGGCCGTCACAGGCCAGTACGGGGGAAAGCTGGAGGACTTCTGCTCGGACGAGTGCAAGTCCCACTACACCCTGCTCTTCTGCCAGGTGGCTAAGTGTGACGCGTGCGAGCGCCAGGGGAAGCTGATTGAGACCCTGCCGATGCTGGGCGAGGTGAAGCACTTCTGCAACCTCCAGTGTCTGCTCGACTTCTGCAGCCTGCAGACCCAGAACCAGGGCAAACCCCAGGGACAAAAGGTGGCCATCTCAATCGCTCCATCCCCCTCCAATACTACCACTGCTACGAGTGTGTCTGATCCGGTCATCGCCAATGTAATCTCACTAGCCAGCTCCCCCACTGGCCAGCCCAACTACGCCAACACTTCCCTGcaagGGACTGTTCCCAGCAGACATGTGAAGTATGTTGGAAATGCCAGCACCCAGACACAGGCCCCCCGGGCACCTCCACCCAGGGCTCAGAAGAACAAGGCCCTGCTCTGCAAACCCATGGTCCAGAACAAGGGCATCATGTGTAAACCCAACTTCACTACCACAGGGTGCCAGACAGATGATGATTTCCCCAAGGTGATCATAGTGCCTGTCCCAGTTCCAGTGTATGTCCCAGTCCCCATGAACctgtacacccagtacacccccCAGCCTGTTGGACTTCCCATCCCGCTGCCCGTGCCCATGTTTCTGCCGGTGACCCTGGATAACGCAGAGCGCATTGTGGAGACTATCCAGGACATCAAGGAAAAGATCCCCTCTGACCCTTTCGAGGCCGACCTCATCCTCATGGCTGAGATGGTggctgatgaggggagggagaagtCCCCTGAGCGACCCCCTGAAAGGCCTCCAGCCCCAGTAGTACAAGACGACCAGGTCAGCACCTACAGTGGAGACCTGGACACAGACGAACTGAGCAACTTCCTCACCACTTGGGATGACGAGCCACCCCCCACCCCTGGCGTCTCATCGCGGCACAGTCGACCCTACGCCCACGAGACGCTCCGACCCATCGTGGACATCAATGTCCCcgccacccccccaccccccatcatGGACATAGAGGCTGACTTCCCAGTCCAAACCCTGGAGCTGATGGCCCATTGGCGGGATCAGGAGAGGGATAGAAGTCCCAgtccacctccttctcctccacgaCGAAGAGCCAGAAGGAAAGCTCGGGATGGCTTGCCACAGAAGAAAAAGAAGCGTAAGTCGAGAGCAGCAGAGACTGCGTCAGCAGTGCCTTCGCTGGCTGCGGCCAAGAGTGACGTGGTGCCCGGCGAGCCCCCCAAACTGCAGCACATGTACGGGGTGGACGCCTGGAAGAGATGGGTCCAATGGAGCAAGACCCAGCCTGACCTGGAGAAGCCTCGATTTGGCTCGCGGCCAATGGAGATAAAGGAGGATGTTTTGAAGTGCACAACAGCAGAGCTGAGCTACGGTCTCTGTCGGTTTATTTGTGAAGTTAAACGACCCAACGGCGAGTCCTACAGCCAGGACAGTCTTTTCTATCTCTGCCTCGGCGTCCAgcagTACTTATTTCAGAATGGGCGCATGGAGAACATATTCACTGATCTCTTCTATGGCAAGTTCACCCTGGAGATCACCAAGCTGCTGAAAGACTTCAAACCTACCATAACTGCCAGTGGCTACCTGCACTCGCGGGTGGAGGAGGAGTACCTGTGGGACTGTAAACAGCTGGGGGCCTACTCTCCCATCGTGCTGCTCAACACGCTGCTCTTCTTCTGCACCAAGTTCTTCCAGTTCAAGACGGTGGCCCAGCACCGCCAGCTCTCCTTCGCCCACGTCATGCGCTGCACTAAGTCCATCCACGACAACACCAAGTCCAACTTCCTGCGCTTCTACCCGCCCATCCCGAAGAAGGACCTCGCAACTGAGACAGCAGCTGATGCAGACGGTGTGGCAgcgaagaggaagagggaggacgaggagaaagaggaggtgctggagatgatggaGAACAGTGAGAATCCCCTCCGCTGTCCTGTCCGATTGTACGAGTTCTACCTCTCCAAGTGttcGGACTCGGTAAAGCAGCGCACCAACGTGTTCTTCCTGCTCCCGGAGCGCTCGTGCGTCCCCAACAGCCCCATGTGGTTCTCCTCCCAGGGCCTGGATGACCACACCCTGGACACCATGCTGACTCGCATCCTCACCGTCAGGGAGATCCATTTGGGAGACCCCCAAAGAAACAAGCCCCAATCCAAGGACCCTGAGTGGACCCCTGACCAAGACAGTGACGAGACTGATTGACTATGAGGAAtggtgcccacacacacacacacagttagaagCTCTTGtttgcatacatacacacacacacacacacacacaaactacgtGTTGATCCGTAAGGACTCCAGCCATGTGTGAAGAGTTGTGTGTTCGCACATGGTGTCCAAGGTATGGACTGAGAATGTGTCGTGTACACAAAATGTATAGGGAATGTGTGTAAACGCAATTATGAACTGACGCTCAAACACACAACTGGGACTGAAGAGAGACCCTGTTCATGCTGTCTGGTCTTTCAAAATCAAGTGGAGTAAACAGAAGGAATCACTTTAAGAAGAATCACATTACTGCATTTGTGAGCGTGGTTGGGGTCAATACCATTTACATTCCAGTCAATTAAGAAAGTGAACCAAACTCCCATTCAACATGTTACCAATTGAAAAGCATTAAAGAGACTTTGAATTttagtgtacttcctgaattgaaatggacttgaccccaaccctggtgagCATAATTGTGGTCATAGAAAGAAATGAGTTTGGTTAACAAGATCTTTTCAAGTTCTTTCACTTCACAATACGATGCAATGCTCTCCAGCCCTAATCAATATGTACTCTGATTGGGAAGACGCTTTTAAGAAGTTGCCTATCACATGGAGCATAAGTCAATCTGACCAAGTCCTTTCTAATGCAGAGTTCTTATTTCTGGGATCACTACAAATATGAGGACgctttgaaaatgtttttttttttaatattacAGATGTCAACAACGTTGTTTTAGTGATTTTGTATGTTAAAGGATATATGACTATTTCTGGTGTTTGCTGTTGTTTACGGGAATGAGAACATTGACCAAACGCCGAGGGATATAACTAGCTGTCAATAGTGTTGTCCAAGTCCATTGCCTACTAAAATTGGTGGGAGGCAGACCCATGCCATTTAATTGTCTATTGCGTTATATTTGGAGTCATTTGCCAAAATGCTTTGACACATTAGTGCTCCCACATGCATACACAAGAACGCATGTGTActgttgttttggggggggggggggggcattgtcatcctgtgTTTCCCTATGTAGAATATCCAAACACTTGTGATTTGGTGTGATATCAGGAATAAGGAGTGAACCCTGAATCCTCAAAGTGGAATTAGAAATGAGTATGCTGTAGTTTGAGGCCATATTGACAGTTTATCTGCAAAGACGAGCAATTTTACATTAAGTGCCCCCCATTAATGGTTCTCAGAGGTGCGTCTCTTCGACTTTGTTCTGAGAAACTTTTGTATCcaaatattatttttaaataaatgcCGAAAAACTAA

Function

GO: NA

KEGG:

id description
K24675 ZMYM2_3_4; zinc finger MYM-type protein 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1768077 lncRNA upstream 6850 38053303 ~ 38057721 (+) True LOC110496149
TU1768086 lncRNA upstream 11405 38051108 ~ 38053166 (+) True G1545149
TU1768169 lncRNA upstream 39370 38024970 ~ 38025201 (+) True G1545229
TU1768144 lncRNA upstream 186684 37877647 ~ 37877887 (+) True G1545205
TU1768143 lncRNA upstream 187434 37876906 ~ 37877137 (+) True G1545204
TU1768182 lncRNA downstream 7059 38094962 ~ 38095210 (+) True G1545242
TU1768198 lncRNA downstream 33690 38121593 ~ 38132628 (+) True G1545258
TU1768203 lncRNA downstream 40276 38128179 ~ 38129018 (+) True G1545261
TU1768215 lncRNA downstream 57602 38145505 ~ 38145709 (+) True G1545272
TU1768291 lncRNA downstream 151575 38239478 ~ 38239829 (+) True G1545345
XM_036952667.1 mRNA upstream 6849 38029173 ~ 38057722 (+) False LOC110496149
XR_002469521.2 mRNA upstream 6849 38029173 ~ 38057722 (+) False LOC110496149
XM_021571876.2 mRNA upstream 17842 38029298 ~ 38046729 (+) False LOC110496149
XM_021571873.2 mRNA upstream 44347 38008948 ~ 38020224 (+) False LOC110496147
XM_021571874.2 mRNA upstream 46194 38009031 ~ 38018377 (+) True LOC110496147
XM_021571881.2 mRNA downstream 10760 38098663 ~ 38107458 (+) False LOC110496153
XM_036952671.1 mRNA downstream 10760 38098663 ~ 38107458 (+) True LOC110496153
XM_021571891.2 mRNA downstream 65942 38153845 ~ 38159052 (+) False LOC110496156
XM_036952675.1 mRNA downstream 65942 38153845 ~ 38159052 (+) False LOC110496156
XR_005037461.1 mRNA downstream 65942 38153845 ~ 38159055 (+) True LOC110496156
TU1767350 other upstream 1008084 37055983 ~ 37056487 (+) True G1544455
TU1766999 other upstream 1201388 36862923 ~ 36863183 (+) True G1544137
TU1766867 other upstream 1299338 36764294 ~ 36765233 (+) True G1544007
TU1765133 other upstream 1972965 36086776 ~ 36091606 (+) True LOC110496111
TU1765134 other upstream 1976214 36076661 ~ 36088357 (+) False LOC110496111
TU1768221 other downstream 105349 38193252 ~ 38204455 (+) False LOC110496158
TU1768223 other downstream 105349 38193252 ~ 38204455 (+) True LOC110496158
TU1768508 other downstream 587124 38675027 ~ 38676004 (+) True G1545533
TU1768490 other downstream 602535 38690438 ~ 38691269 (+) False LOC110496176
TU1769768 other downstream 1028585 39116488 ~ 39120019 (+) True G1546605

Expression Profile