RNA id: XM_036952672.1


Basic Information

Item Value
RNA id XM_036952672.1
length 1529
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC110496154
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38121576 ~ 38152320 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGCTTGGTGAATTCCAGTGTGGAATACAAGGTCGCTACGTGTTGGGTTAAGGTCTTTACCACTTATTAATTAGTACTTGTAGTAATAGCTGAATTTAGCTGGTTAGTTAAATTAATGCcgcaaagagagaagagaagtccTGTCATTGAGCAACTGTTTTTTTTCCCAACAGTCCCTCCCTCAGTCCCCGTCATATAAAATAAGTGTCTATTTGGGTTGATGAAATAGGTGTCTGGTATGAGTGTTTAGATCAGTATGTCTGAAGGAATAGTCTACGCTGATGTGAAGTTCAAAAAGCACCAAAAGACTGAAGGAAAAGATGGTGCAACAGCATCCACAGGGAATGATGCCACGTACTCTGAAATCTCAATTCCCAAAGCCGGACGCAACCAGCCATCTACCGACActaatgctgGTGACCCTGATTCTCAGGAGGGGTTAAAGGTCAAACCAGGTGGATATGACCCTGTCAAAGTGGTCCTGGTGACTCTCTGTTTTCTTCTGATGGGGACGGTCATTGGACTTGTGTTCCTGTATATCAGCAACCTGCCAACCAAAAACACAGAGCTCCAAATTCTGCAAGCGGCTTACAATCGAAATCTTACAGATTTGGAAAAAGCTTTTACCTCAGCTTTAATGATCAAAAACAGAGAGCTTCAAGAACTGCAAGACAAGAACAAAGATCTTCAGGAGAAGGAACGTGCAGTTTGGCAACAACATGAAGAATTGAAAAAGCAGAGAACTCCACCCTCTTGCCCTACAAACACAGGGAATAATGACTGTCCTCAACCTATGAACTGTGCTGAAGGCTGGGAGTATTATGGGGGGAAGTGCTATTACTTCTCCCCTGATAAACTGACCTGGGCTCAGAGTCGGGATGAGTGTATCACCAGGGGGGGACACCTTGTCATCATAGGGAGCCTAGAGGAGCAGACGTTCTTAGATCAGAAAAGTGGTACAAAAATAAGTACGGAGCCTGAAGACAAGTTCTGGATTGGGCTGACGGACAGTATAAACGAGAATGAGTGGTTATGGGTGGACAATTCATCTCTAAGCACAAGATTCTGGCTTGGTGACTGGGAGCCAGATGACTGGAAAGGAGAGAATTCCGAAGGTGAAGACTGTGCTAGAATGGGGGAACGGGGTGGTACTAAAGACGGCAAGAGTTGGTTGGATGTCAACTGTAATAAGACTCAAAGAAGAATATGTGAGACAAAATCCCCCTTGTGAAACAGTATCTTTAAGAAACTCAAAAGTTCCTTTTAAATATGTCTCTGAACAACCCCAAAtattgttaagtgtgtgtgttagtgtgggttttcaatTCATTTTTGTAAATCATGATATCTCCATTTTgcagtgcaggaaaattctcagcaacaagagTGAtacaattaagatcctacacctgtacatCATCCTGTGTGTTTTGTACATGTATATTTCTGCTTAACAGTGCTGTCTCTAGGCTAGTCATTTGAGAAAATATTGTGTGTGTCTATCCAAACCATTGAATTAATAAAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1769095 lncRNA downstream 14147 38098706 ~ 38107429 (-) False G1546013
TU1769094 lncRNA downstream 14147 38104996 ~ 38107429 (-) True G1546013
TU1769091 lncRNA downstream 25245 38095976 ~ 38096331 (-) True G1546011
TU1769054 lncRNA downstream 54025 38065502 ~ 38067551 (-) False G1545988
TU1769057 lncRNA downstream 54025 38065502 ~ 38067551 (-) True G1545988
TU1769130 lncRNA upstream 12965 38145512 ~ 38145712 (-) True G1546047
TU1769079 lncRNA upstream 15043 38147590 ~ 38152232 (-) False LOC110496154
TU1769066 lncRNA upstream 24618 38157165 ~ 38159050 (-) True G1545996
TU1769148 lncRNA upstream 56426 38188973 ~ 38192777 (-) True G1546061
TU1769159 lncRNA upstream 67599 38200146 ~ 38203696 (-) True G1546072
XM_021571870.2 mRNA downstream 129207 37978117 ~ 37992369 (-) True LOC110496145
XM_036952665.1 mRNA downstream 190831 37922153 ~ 37930745 (-) False ppt1
XM_036952666.1 mRNA downstream 191933 37922153 ~ 37929643 (-) False ppt1
XM_036952664.1 mRNA downstream 192239 37922153 ~ 37929337 (-) False ppt1
XM_021571850.2 mRNA downstream 266844 37844809 ~ 37854732 (-) True LOC110496137
XR_005037460.1 mRNA upstream 8182 38140729 ~ 38141362 (-) True LOC118941154
XM_021571889.2 mRNA upstream 15048 38147595 ~ 38152319 (-) False LOC110496154
XM_021571888.2 mRNA upstream 15048 38147595 ~ 38152320 (-) False LOC110496154
trnaa-ugc-137 mRNA upstream 163336 38295883 ~ 38295956 (-) True trnaa-ugc-137
XM_036952706.1 mRNA upstream 356323 38488870 ~ 38491346 (-) True LOC118936476
TU1768955 other downstream 198242 37922155 ~ 37923334 (-) True ppt1
TU1767721 other downstream 819402 37301508 ~ 37302174 (-) True G1544806
TU1766170 other downstream 2108890 36010987 ~ 36012686 (-) True G1543346
TU1765944 other downstream 2617419 35452618 ~ 35504157 (-) True G1543128
TU1769081 other upstream 15043 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other upstream 15043 38147590 ~ 38152232 (-) True LOC110496154
TU1769139 other upstream 32703 38165250 ~ 38214049 (-) True G1546053
TU1769405 other upstream 427102 38559649 ~ 38563318 (-) True LOC110496167
TU1769487 other upstream 541894 38674441 ~ 38676029 (-) True LOC110496175

Expression Profile