RNA id: XM_021571911.2


Basic Information

Item Value
RNA id XM_021571911.2
length 3360
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110496166
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38478939 ~ 38553932 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagcgagaggcaggaAGTTCACTTCTCTGTGGCCTTTTCACCCAAGCGGCACAATGACTTGTGGTTGGGGGCCACATCATttagacatgcacacacagacacactcacacagacacggGAAAGACAGAGAAGATCGTGAGGATTGTAGGGACACAAACCTATCTGTAAATCTAAGACACACAGCTTAGAACTATGAACCTCCACGCTTTGTTCAACCCCTGAAGCTAAACATGCTGGACAGCTACTACTGAAGCATCTCAGCTCATAGAATGACACCAAACGCCACCCTTCCATTCGTCCTCGTCACCTCAGCCACCCGAGATGACAAAGCCAAGGTGGTGGACATCGAGGCCATCATGAACAACTTAATCATTGTCCTTTACACGCTGACCATTGTCCTGGGCACCACGGGCAACTCTGTAGTCATCTGGGTGGCAGGCTTCAAGCTCAAGCCCACCGTCACCAATGTGTGGCTGGTCAACCTGGCCGTGGCCGACCTCATCTTCTGCCTGAGCCGTGTGCTCTCGCTGACCAAGAAGCTCTTCTTCGACTACTGGCCGTTCGGCATCTTTTTATGCAAGTTCAACGGCTTCTTCAAGTATGCCAACATGTTCTGCAGTGTGTTCCTGCTCGCTGTCATCAGCATGGACCGGACGCTCTGCGTCTGGCACCCCGTCTTTACCAAACGGCGTAGGACGATCTGCGCCGCCCGCCTGGTGAGTGCCGGCGTGTGGGCGGTGGCGGCCATTTTGAGCGCCCCCTACTTCGCCTACCGCCAGGTTTACCTCGGCAAGAACAACCTGAGCAAGTGCTCGCTAGATGTCAAGGAATCAACGAAAGGCGATAACAGCGCTAAGCTCGCGCTCTACCTAATGCGCTTCCTATGCGGTTTCCTGCTTCCTTTCCTCATCATCCTCTGCTGCTACATCCTAGCAGGGTTAGGCATCAGACGCACCCGCCTGTTGGGCAAGTCACGTCCCCTCCGTATCCTGGCATCGCTGGTCTGTGCTTTCTTCCTGTGCTGGGCGCCCTACCACTGTCTCCTACTGGTCAAGATGGTGAAGAGCAACAGTATGGTGGTGAAGGTGGGGCTGACAGGGGCCACAGGCTTTGCCTACTTCAACAGTTGTGTGAACCCGCTGCTGTACTTCTGTATGGGGTTGGACATGAGAGGGTCAAGATTCAGGCAGAGCTTAGCTGGGGTGTACCGGAGAGCACTAGCCGATGACAGAGATGGTCGAAACACTCAGTCCAACGAGCGCACAGTGGATGATAGTTCTGGCTCTGTATCACGACTTGCAATGGTGAATGTGGCCAATGTCAGTTTCGAGTGAATGTGGCCAAAGTCTGTGGGAAGGCACATTTGGTATGAGGAGGAGTTACTGTCCTTATTAGATCACAGGCTAATTAAACAGTGAATAGCTGAATAGCTTGTGTAGACATATTTTTTATCAGTTAGGATACATATAGACATAGGATAACTGTGAATTTATGTAAATGCCTCAGGAAATAATTATCACACTTTCGAAGTGTTATGTGATGAAAATCATAGAAAGAAAGTGGAACTGTGCCTAGAAAATAACCTATCAGGAGGAAGTGATACAACTTCTGGGGAAAGTCATAAATGACTTCAATCATGCTATGTTTTACTAAGTGTCATGTTTGGAAAAGTGGAAAAACGAGGATATTAATTCCCATATTCCGTCccatgagacaagattgtaattggAAATGGCGAAATTGCGGAGAAAAAGGAGTGTAAAATGCCCTGGCAAATATTCTTATACTTACCGGTGTAAACTACAACATTATCCCAATTTGATATGTTGCTTAAGGGACAGCTCACAATTTACTGGGGGGTGGTCCAaaataggggagggttgtcaaactttGTCTTTGTTGCTTTGTGGtgggttgtgttttttttttattgggcacaggccagtatagtctaccagtctaacggTCTATCCAgcattcatagtgacaatagtggtagATGGATCAtttgtccagatctgcaataggCTAACTAACAATCACACCTCACATAAAACCATTCAAAACTGCACCTCATTCACTCTCATTGATGATTAAAAGGGGGGGAAATAAAGTTGAGAGAAAATAGGAAGAAAGGTGAAAGGGAGTCAGAAGAAGAGGATGTGATCTGGACAACTTGACTTGAGGAAGCGTGGTGGTCGCTTGTTTCTCTTTTAGTCCCCACATTGCTCCTCCTAGACAGACGGTTTCCATCATGTCTCAGTCACATGACTGGTCTCTCCTTCAGACAAACTGTATCAGAGGTGAACACAGAGGCTTAGCTGAAGCTCTGTGGATGCCAGTTCAGATAAGACACCACACTCACAGCGGAAGAGAAATGAAAAACACAATTCAACTCACTTCATgactctctcgctccctgtctctctttctctctcttcttctccgcTCTCTGATTATATTTTTCAGAAATAAAAAGTATGAAAGAGACAATTCAGCTGACATCTATTTATCTTTTGATAAATATTCTCAATGAGAATCAAAACTGTTTTCCTGTATTGTCTGAAACTGTGTAGCTAGCGTTGTCATTCATGAAAGGCCTGAACGTCCAGGATGCAGAGAAACAGAAATCCCCCTCAGGACAATGGAGGAAAGGAACATAAAATGGATGGGAACAAACAGAACAGACCAGCCAGCCGTACCCTCCTTCCTCACATCTTTTTGATGCTCTGCCCTTTATCAATgtcaaattattttttaaatcaatgaGAGTAAAACAAATTGACCAATTGCCATTGTTGAGAAAGTACCATGCCAACTGATATCACATTCTTCAACCAACATGTTGACCTATAGGAAGAGGGAACTCCTACTGTATGTCTGATTCATTTGATTTGTCATGAGTCAGCAACACACATCCTCTATAGTTGCTTTTTCACTGATCATCATTCACAAGGGGGAACAAACAGAGGTTCTTCTCTTGCCTTGTTGTCTTCCCTTGCTAGCAAGTTGGCTAaacactgctagctagctagccttttGAAATAATCagatttttaaataaataatattaaATGGCAAATACTTATACTTTCCGATGCAACGTACAACATTATACCAATTTAATATTCTACTTCAACGTATTGGCTCCCCTATGAGCTAAAAATAGAATGTCATAATTGTTATGTCACATTTTTTTTGTTCTGTTTTTACGTTTCAAAATGAGGGGATTCTAATAAGGCTACAATCTTGTCCAGTGccaacccgtcattcagggcatgGGGGGGGGGAGTCCCACCTGCTTTGAGCCCCACAtgttcagcaaaaaaaaaaagttacaattATTCTTGACTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1769356 lncRNA downstream 12542 38522603 ~ 38528524 (-) True zn706
TU1769352 lncRNA downstream 22261 38518382 ~ 38518805 (-) True LOC118940976
TU1769357 lncRNA downstream 29449 38496929 ~ 38511617 (-) True G1546250
TU1769346 lncRNA downstream 38290 38488873 ~ 38502776 (-) True G1546244
TU1769327 lncRNA downstream 103314 38434987 ~ 38437752 (-) True G1546226
TU1769414 lncRNA upstream 10022 38563954 ~ 38570730 (-) True G1546303
TU1769421 lncRNA upstream 22200 38576132 ~ 38576346 (-) True G1546308
TU1769425 lncRNA upstream 26245 38580177 ~ 38580474 (-) True G1546312
TU1769426 lncRNA upstream 27654 38581586 ~ 38581888 (-) True G1546313
TU1769429 lncRNA upstream 31017 38584949 ~ 38585149 (-) True G1546316
NM_001160599.1 mRNA downstream 12558 38522608 ~ 38528508 (-) False zn706
XM_036951043.1 mRNA downstream 21277 38517903 ~ 38519789 (-) False LOC118940976
XM_021571909.2 mRNA downstream 22992 38516015 ~ 38518074 (-) True LOC110496165
XM_036951042.1 mRNA downstream 35304 38502119 ~ 38505762 (-) True LOC110496164
XM_036952706.1 mRNA downstream 49720 38488870 ~ 38491346 (-) True LOC118936476
XM_021571912.2 mRNA upstream 3120 38557052 ~ 38563365 (-) False LOC110496167
XM_021571915.2 mRNA upstream 57521 38611453 ~ 38617573 (-) True LOC110496170
XM_021571922.2 mRNA upstream 94428 38648360 ~ 38665437 (-) False LOC110496173
XM_036952707.1 mRNA upstream 94428 38648360 ~ 38665538 (-) True LOC110496173
XM_036952708.1 mRNA upstream 120446 38674378 ~ 38675377 (-) False LOC110496175
TU1769139 other downstream 327017 38165250 ~ 38214049 (-) True G1546053
TU1769081 other downstream 388834 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other downstream 388834 38147590 ~ 38152232 (-) True LOC110496154
TU1768955 other downstream 617732 37922155 ~ 37923334 (-) True ppt1
TU1767721 other downstream 1238892 37301508 ~ 37302174 (-) True G1544806
TU1769405 other upstream 5717 38559649 ~ 38563318 (-) True LOC110496167
TU1769487 other upstream 120509 38674441 ~ 38676029 (-) True LOC110496175
TU1769511 other upstream 214165 38768097 ~ 38773684 (-) True G1546385
TU1769526 other upstream 222352 38776284 ~ 38787801 (-) True G1546396
TU1770682 other upstream 1071843 39625775 ~ 39631098 (-) True LOC110496208

Expression Profile