RNA id: XR_005037468.1


Basic Information

Item Value
RNA id XR_005037468.1
length 1879
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110496168
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38563969 ~ 38572330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGATCTCAATATCCATGATCTCCATTACTCAGTCACAGTGTATTGTTACTGTGGAAGGCAATCTCAACAACATCAGAGATGGGTCTGTGGTTAATTGCGTTCACCATTTTTCTGTTGAAAGGTGCTCTCTGCCAACAGTGGAGTCTGTGGACGCCCCAAAGCATTGTGGCTGTTGGTGGATCCTGCCTAATGGTCCCATGTAGATTCCAGATCCCTGCAGAGTTTGATGCTACCTTGAACAACTGCACACCCCATGGGCTTTGGAAGAAACATTCAGAATGGGGAAATATTGTTTTCCACTCAGCCCAAACGGATGCCAAGAACATCATCAAGGGAGTGATGTTAGGAACTCTGTTGAACAAGAACTGCACCACTATTTTCAACAGTTTCTCTGCAGGATATGATGACACATATATCTTTAGGCTGGAATGTGCTGGAACAAATCACCTCAAGTATAACTTTCTACCAGGTGTAAATATCAATCATACAGacaccccacccagaccccAACTGATCTCTATGGGCAACATCATGGAGGGGGAGTGGGCTAGACTGAGCTGCTCTGCCCCCGCCCCCTGCCCTACATTGCCGCCCTCCCTGACCTGGACCTCTAGGCTGGGTGGAAGTGTTGAGAGCCGGCTACAGGAGGGTATAGATGGGCTCATGACCATGACCTCCATCCTGACATTTACCGCCTCCCTCCGGCATCATGGGCTGATGGTCAAATGCGCCGCCTGCTACACACTGCAGCCAGGGGGCACCACCAAGACGACTCAGGGGAACCTGACCCTCAATGTTCTGTATGCCCCTAAAAACACTGTAGTCCTGTCCAACCCAACAGGGCCTGTGCCTGAGGGTAGGGCAGTGACCCTGACCTGCCAGAGTGATGCCAACCCACCGGTGGAGAGCTACACCTGGTACAAAGACATCAGTGGGAAGGAGACCTGGAAGGCCAATGGGCAGACACTAGTCCTCCTGGTCAGCAAAGCGGACAGCGGGCTCTACCTCTGTGAGGCCCACAACCAGAACGGATCACAGAGGTCAAAGGCCATGCCTCTGGAGTTCGAAAGCGACCAATTTTTCAAGATGGCCCCCTACATCATCTGTGGAGTGATGGTGTTGCTTTATGTTCTGACCATCACCGTGGAGGTGTATAAATATAAAAGTCTCTCCAGAAGACTGAAACAGATCGAGCTCTCCCTCTCAGGGAAAGCAGACAACACATACACCAACCTAAGGATCGCCAGCACCAGCTCTGACTATGACGAACTCCAGATGACCAGGGCTGTCCCAGGTAAATCTAACTCTCATGAAAACCCCAATGGAATTGGCAGAGGAAGTGAAAGAGCTGCGCCCTGAAACCACATGGCAAAACAGCTCCAGATTTAACCTTTTCAGTTGAGCTTTTGCATGGAAAATGATAATCTTGTATCTTTTGCTTCGGatcatactgtatattttttcgGCACAAAAGACATGATATTATATATTTTAACCTGGTGTTTTCTGAATGTCATCACCTCTGCTAGTGTATTTCGCCTGAAAGAGTTCAACATGATCCAGAGGCGTCATGcacctgatttaaaaaaaaaagggagCATTGATAGCCAAATTGCATATCTTTGGATTCATGCGTAAGATGAACCATAGCTTCTGTATTTTCAGTGTACAAATGGATAAACTCAATGGGCATAATGCCTCTGTGTTGCCCCTGTGAGCTATGTATTTACATCTCAATGTGTAAGGCTGTATATCTGAATTAATGCAATGCTTTATGCACTGATAGTTGTATTTCCTAAAATAGTACTAAATTGTTCTTGAAGGATTTTGGTTTGAGGTTCAGCATCATCAGTGTATTGCTGTCGTCTTCGCTGTAGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1768220 lncRNA upstream 40136 38522599 ~ 38523833 (+) True G1545276
TU1768393 lncRNA upstream 47037 38502789 ~ 38516932 (+) True G1545436
TU1768385 lncRNA upstream 55167 38495407 ~ 38508802 (+) True G1545432
TU1768370 lncRNA upstream 126282 38435118 ~ 38437687 (+) True G1545419
TU1768369 lncRNA upstream 126376 38435118 ~ 38437593 (+) False G1545419
TU1768451 lncRNA downstream 32938 38605268 ~ 38605493 (+) True G1545493
TU1768487 lncRNA downstream 105907 38678237 ~ 38680035 (+) False LOC110496176
TU1768483 lncRNA downstream 110333 38682663 ~ 38685107 (+) True G1545508
TU1768512 lncRNA downstream 114930 38687260 ~ 38687551 (+) True G1545537
TU1768478 lncRNA downstream 121206 38693536 ~ 38695903 (+) False LOC110496176
XM_036952704.1 mRNA upstream 67502 38482660 ~ 38496467 (+) False LOC110496162
XM_036952705.1 mRNA upstream 67502 38482660 ~ 38496467 (+) True LOC110496162
XM_036952691.1 mRNA upstream 82638 38339524 ~ 38481331 (+) False LOC110496159
XM_021571913.2 mRNA downstream 20945 38593275 ~ 38597358 (+) True si:ch211-171h4.3
XM_021571919.2 mRNA downstream 45472 38617802 ~ 38628558 (+) False LOC110496171
XM_021571916.2 mRNA downstream 45472 38617802 ~ 38631694 (+) False LOC110496171
XM_021571917.2 mRNA downstream 45621 38617951 ~ 38631694 (+) True LOC110496171
XM_021571921.2 mRNA downstream 60177 38632507 ~ 38645625 (+) True LOC110496172
TU1768221 other upstream 359514 38193252 ~ 38204455 (+) False LOC110496158
TU1768223 other upstream 359514 38193252 ~ 38204455 (+) True LOC110496158
TU1767350 other upstream 1507482 37055983 ~ 37056487 (+) True G1544455
TU1766999 other upstream 1700786 36862923 ~ 36863183 (+) True G1544137
TU1766867 other upstream 1798736 36764294 ~ 36765233 (+) True G1544007
TU1768508 other downstream 102697 38675027 ~ 38676004 (+) True G1545533
TU1768490 other downstream 118108 38690438 ~ 38691269 (+) False LOC110496176
TU1769768 other downstream 544158 39116488 ~ 39120019 (+) True G1546605
TU1769824 other downstream 560789 39133119 ~ 39146252 (+) True G1546641
TU1769903 other downstream 786081 39358411 ~ 39372481 (+) False G1546713

Expression Profile