RNA id: XM_021571919.2


Basic Information

Item Value
RNA id XM_021571919.2
length 2291
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC110496171
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38617802 ~ 38631694 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGACAACAATGTAACGTTCTCGTGATTATTAAGTAGGGGGAGTGCTCTTTTAGACAGGTCAGGTGCGGATTGCAGACGGAAGCTGAAATTGTAGTTCTTTGCAGATCCCTGAAAGCATCCCGAAGGATCATTttttcccagatctgtgtgtgctGGGACCCAATGTTGTCGTGGAGAGAGACGAACAGAATGAGCATCCAGTGAGAGCAGATCGAAAGAGAGACCCACTTCTTTGACATCACCCACAGTCAGTTTTATTTCAATAGGTCCTTGTGGTTTGAGACACCCCATCTGGCACCATGACGTCCTCTATGCTACGCCGACAATTGAAGAACCTTGTTCAGAACTTCTCTGAGGCTGAGGTCAAGGTGAGGGAGGCCACCTCCAATGACCCCTGGGGCCCCTCCAGCTCGCAGATGGCCGACATCTCGGACCTCACCTACAATGTGGTGGCCTGCAACGAGATCATGACCATGCTGTGGAAACGCCTCAAAGACGACAAGAACTGGAGGCACATCTACAAGTCGTTGACCCTGCTGGAGAACCTGTTAAAGACGGGCTCAGACCGCGTTCTGAATACGATGAAGGACAACATCTACATTGTGAAAGCGCTAACAGAGTTCCGTTTCCAGGACAAGGATGGGAAAGATCAGGGGGTGAACGTGAGGGAGAAGGCCAAGGTAGTACTGGTTCTTATGGAGGACGACGAGAAACTAAAGGAAGAGCGAGAGTCTGCGCTCAAGACCAGAGACAAGATCTCAAAGAACGCCACTGCCTCCTCGGACGACCCCAACGACCCCAAGGACCCCAACTACAAGCCAGTGTATGTCCCAGGAGCCACCGGGCTCCCCTCCCTGGCCAACATCCCGTCTGTGGCTGATCTCGCCGCCAGCTTTGAGGCAAAGAAGCAAGAAAAACTGAGACTAGAGGCCCAGAAAAAAGAGGAGGAACGAAGGTCAAAGATGACCAAGGAAGAGCTTGAGTGGGAGGATGCCGCCAAAGCAGGAAAAGTTGCTGACGCCTTTTGCGGGGCAGATGCGCCATCAGAGGAGGATGCGTGGGGTGCAGCAGCCAAGACACCCGCTCCTGATCCTTGGGGGGTTGCATCCAAAGCTCCATCCGAGGATGCATGGGGCGGATCATCCAAAGCTCCAACCGAGGATGCATGGGGTGCACCATCTAATGCTACAACAGAAGAAGCAGATCCTTTTGCGGCACCAGCCAGTGCCCCAACAGATGGTTCAGATCCTTTTGCGGCTACAATAGATGGTTCTGATCCATTTTCTGCACCATCCAATGCATCATCTAAAGTTGAAGCTGATCCATTTGGGGCACCAAAAGATGATCCCTTTTCAGCACCATCCAATACACCAAAAGATGGTTCCGATCTGTTTGGGGCACTAAAAGATGATCCCTTTTCAGCACCATCCAATACACCAAAAGATGGTTCCGATCTGTTTGGGGCACCAAAAGATGATCCCTTTTCAGCACCATCCAATACACCAAAAGGTGGTTCTGATCCGTTTGGGGGACCAAAAGATGATCCTTTTTCAGCACCATCCAATACACCAAAAGATGATCCCTTTTCAGCACCATCCAATACACCAAAAGATGGTTCTGATCCGTTTGGGGCACCAAAAGATGATCCCTTTTCAGGACCATCTAATATGTCTAAAGATGGAGCCGATCCGTTTGGGGCACCAACAGAGGATCCATTTTCGGCACCATCCAATATGCCAAAAGACAATTCCGATCCTTTTGGGGCCCCATTGAATACCCCAACGAAAGGTGCTGATCCTTTTAGGGCACCATCCAGTCCACCAACCGAGGCTTCAGATGCGTGGGGTGCTCCATCCAATCCACCGTCCGAAAAGAAGGCTGATCCCTGGGGAGACGAGGGAACCACAGCTGCCTCTCCCCCCGCAGATCCATTTGGCGATGGCTCGAAGGCTGATGATGACGCATGGGGACCACCAGCATCGAATCCGCCCACCGCCAGTGACCCTTGGGGTGCAACTGCTGCTCCCACAGACACAGCATCGACAAGTGACCCCTGGGGAGATGGAGGAGCTTCCACCACCACAGACACTATGAACTCTGACCCATGGGGAGCTCCAAGTAATGGCACAgTCGGCAATTGATGTGTCCTGGgacaatGGAGCCGCCGCAGACGAAAACAACAAATCGCCAGCTTCGTTCCTTGGCGCAGGAGCTTCACTCGTGAACATGgactcactcctctcctccgaACCCAAACAACCCCCCCTCAACGTCCTTGCCAAGCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1768451 lncRNA upstream 12309 38605268 ~ 38605493 (+) True G1545493
TU1768220 lncRNA upstream 93969 38522599 ~ 38523833 (+) True G1545276
TU1768393 lncRNA upstream 100870 38502789 ~ 38516932 (+) True G1545436
TU1768385 lncRNA upstream 109000 38495407 ~ 38508802 (+) True G1545432
TU1768370 lncRNA upstream 180115 38435118 ~ 38437687 (+) True G1545419
TU1768487 lncRNA downstream 49679 38678237 ~ 38680035 (+) False LOC110496176
TU1768483 lncRNA downstream 54105 38682663 ~ 38685107 (+) True G1545508
TU1768512 lncRNA downstream 58702 38687260 ~ 38687551 (+) True G1545537
TU1768478 lncRNA downstream 64978 38693536 ~ 38695903 (+) False LOC110496176
TU1768479 lncRNA downstream 66304 38694862 ~ 38696088 (+) True LOC110496176
XM_021571913.2 mRNA upstream 20444 38593275 ~ 38597358 (+) True si:ch211-171h4.3
XR_005037468.1 mRNA upstream 45472 38563969 ~ 38572330 (+) True LOC110496168
XM_036952704.1 mRNA upstream 121335 38482660 ~ 38496467 (+) False LOC110496162
XM_036952705.1 mRNA upstream 121335 38482660 ~ 38496467 (+) True LOC110496162
XM_036952692.1 mRNA upstream 136471 38339525 ~ 38481331 (+) False LOC110496159
XM_021571921.2 mRNA downstream 3949 38632507 ~ 38645625 (+) True LOC110496172
XM_036952709.1 mRNA downstream 49417 38677975 ~ 38693973 (+) False LOC110496176
XM_036952710.1 mRNA downstream 49417 38677975 ~ 38693973 (+) False LOC110496176
XM_036952711.1 mRNA downstream 68563 38697121 ~ 38713314 (+) False cnot3b
XM_036952712.1 mRNA downstream 68563 38697121 ~ 38713314 (+) False cnot3b
TU1768221 other upstream 413347 38193252 ~ 38204455 (+) False LOC110496158
TU1768223 other upstream 413347 38193252 ~ 38204455 (+) True LOC110496158
TU1767350 other upstream 1561315 37055983 ~ 37056487 (+) True G1544455
TU1766999 other upstream 1754619 36862923 ~ 36863183 (+) True G1544137
TU1766867 other upstream 1852569 36764294 ~ 36765233 (+) True G1544007
TU1768508 other downstream 46469 38675027 ~ 38676004 (+) True G1545533
TU1768490 other downstream 61880 38690438 ~ 38691269 (+) False LOC110496176
TU1769768 other downstream 487930 39116488 ~ 39120019 (+) True G1546605
TU1769824 other downstream 504561 39133119 ~ 39146252 (+) True G1546641
TU1769903 other downstream 729853 39358411 ~ 39372481 (+) False G1546713

Expression Profile