RNA id: XM_036952707.1


Basic Information

Item Value
RNA id XM_036952707.1
length 1570
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110496173
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38648360 ~ 38665538 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTTCTTATTCAACTCAAGTGTTGATAACGGACAACAAGTCTTAGTGAAGAAGCCCAACCTGCAGGTGTAGCAGGATCCCACTTTGCTCTCCGCTGACCATGAATATCACTTTCATCTTGACTTGTCTCCGCTGAGTCACTCACACAGAGTTGCTTTTCAAGGGGTCAAGCGAAAAGCCTGCTTTACAGAGAGAAGGACCCAGCCTCCCAGCTTCTGGATATCATACATTGTCAGGACGTACAAaagaacacacacatcacagtccGTGTTGATATACATTTGCCTTTTAAAAGACACAACGGGGCTATTTCTTTCACCTGAAAACACAACATGGGGAACGCCAAGAGCAGCGCCGTCTCCAAGGAGATCCTGGAAGACCTGAAGCTCAGCACCAAGTTCACTGAGACGGAGATCACCCAGTGGTACGAGAGCTTCCAGAAGTCGTGTCCCTCTGGACGTATCACGCCCAAGGAGTTCGAGGTCATCTACAGCCGCTTCTTCCCCGAGAGCAACGCCCAGACGTACGCGCAGCACGTCTTCCGTTCCTTCGACACCAACGACGACGGCACTCTGGACTTCAAGGAGTACATAATTGCGCTGCACCTGACGTCCACGGGCAAGACCACCAGGAAGCTGGAGTGGGCCTTCTCGCTGTTCGACGTGGACAAGAACGGATACATCACCAAGTCGGAAGTGACCGATATCTGCAGCGCTATTTTCAAGCTaattcccaaggatgaacaagctGAGCTGCCCAATGACGAGAACACACCGGAGAAGAGGGCCAACAAACTCTGGACATTCTTTGAGAAAGAAGACAATGaGCGAGTTGCAGAAGGAGAGTTCATCAAGGGTGTGATGGACAATGAGGATGCACTTCGCCTCATTCAATATGAACCTGCCAACAAGTAACCCTCTGCTAATAAAGTCCTATGGTCATAGGacatgaccataggagttgacaagacagcacaaacagatctgggatctgcGCTCCTACATTCCACATTCCCCACCCCTATCCTCAATTTACCCATCATAATGCAGAAAGTATTTCGTTTTAATCCCAGTCTAACTTCAATGTTTATCGGACTTCGGTTCAAATAGTATATGTTTTCCTCCAAATACTTTAGCTGCGCGTGATTGTAAAAACATACCATGAACCcgcaaccctggcgttgcaagcgctatgctctaccaactgagctacacgggaCATTACTttttactatatactgtatactggtatTGTTTTTAcgatatactgtatactggtactgCTTTTACGATATTCTGTATACTGGTATTGTttttactatatactgtatactggtactgtttttacaatatactgtatactggtatTGTTTTTACTATATACTGGTATTGTTTTTACTCTATACTGGTATTGTttttactatatactgtatattttgggACTTGATATTTAGCTTTGGAATGTTTTGAGAAAGGGTAAAGAGTATTAAGAGCTGGTAAGAGGGGTTTAGAAAATGAAAGCAAGCAATGAGTAATCTGATGATACTTCATACCAGACGTGCTACTCATT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1769444 lncRNA downstream 43165 38604930 ~ 38605195 (-) True G1546331
TU1769443 lncRNA downstream 43697 38604400 ~ 38604663 (-) True G1546330
TU1769429 lncRNA downstream 63211 38584949 ~ 38585149 (-) True G1546316
TU1769426 lncRNA downstream 66472 38581586 ~ 38581888 (-) True G1546313
TU1769425 lncRNA downstream 67886 38580177 ~ 38580474 (-) True G1546312
TU1769499 lncRNA upstream 24223 38689761 ~ 38689983 (-) True G1546376
TU1769502 lncRNA upstream 25999 38691537 ~ 38691777 (-) True G1546379
TU1769503 lncRNA upstream 29818 38695356 ~ 38696026 (-) True G1546380
TU1769506 lncRNA upstream 31528 38697066 ~ 38702063 (-) True G1546382
TU1769542 lncRNA upstream 60751 38726289 ~ 38730601 (-) True G1546402
XM_021571915.2 mRNA downstream 30787 38611453 ~ 38617573 (-) True LOC110496170
XM_021571912.2 mRNA downstream 84995 38557052 ~ 38563365 (-) False LOC110496167
XM_021571911.2 mRNA downstream 94428 38541066 ~ 38553932 (-) False LOC110496166
NM_001160599.1 mRNA downstream 119852 38522608 ~ 38528508 (-) False zn706
XM_036951043.1 mRNA downstream 128571 38517903 ~ 38519789 (-) False LOC118940976
XM_036952708.1 mRNA upstream 8840 38674378 ~ 38675377 (-) False LOC110496175
XM_021571929.2 mRNA upstream 298549 38964087 ~ 38972431 (-) True LOC110496183
XM_021571934.2 mRNA upstream 401326 39066864 ~ 39081723 (-) True LOC110496188
XM_021571942.2 mRNA upstream 451053 39116591 ~ 39133147 (-) False LOC110496190
XM_036952727.1 mRNA upstream 451053 39116591 ~ 39134268 (-) False LOC110496190
TU1769405 other downstream 85042 38559649 ~ 38563318 (-) True LOC110496167
TU1769139 other downstream 434311 38165250 ~ 38214049 (-) True G1546053
TU1769081 other downstream 496128 38147590 ~ 38152232 (-) False LOC110496154
TU1769086 other downstream 496128 38147590 ~ 38152232 (-) True LOC110496154
TU1768955 other downstream 725026 37922155 ~ 37923334 (-) True ppt1
TU1769487 other upstream 8903 38674441 ~ 38676029 (-) True LOC110496175
TU1769511 other upstream 102559 38768097 ~ 38773684 (-) True G1546385
TU1769526 other upstream 110746 38776284 ~ 38787801 (-) True G1546396
TU1770682 other upstream 960237 39625775 ~ 39631098 (-) True LOC110496208
TU1770674 other upstream 977317 39642855 ~ 39646533 (-) False LOC110496816

Expression Profile