RNA id: XM_036952712.1



Basic Information


Item Value
RNA id XM_036952712.1
length 4626
RNA type mRNA
GC content 0.51
exon number 18
gene id cnot3b
representative False

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38697121 ~ 38713314 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGCAACAGCGGAGGAGGTGTTCCTGGTAGCCATCTTGGATGTGCGGAGTGATTGTTTGGCGAAAATAATTAATACAATTTAGAAAAATAGCGTGAGGACTTGGGAAAATACGATTTAAAAGAGTGGGGTCAACTAATAAAAGAAAAGCTTAATCGGAAAATCCAGTGAAAGTAAGGCATGAAGAAAGCATCCTAGTCAACAGTCATGGCTGATAAAAGGAAACTTCAAGGTGAAATAGATCGATGTTTGAAAAAAGTTACGGAAGGCGTGGAACAGTTTGAAGACATTTGGCAAAAGCTTCACAATGCAGCCAATGCTAACCAGAAGGAGAAGTATGAAGCCGACCTCAAGAAAGAGATTAAAAAACTACAGcgtcTTCGAGACCAAATCAAGACGTGGGTGGCCTCCAACGAGATCAAAGACAAAAGGCAGCTAGTGGAGAATCGCAAACTCATTGAGACGCAAATGGAGCGGTTCAAGATCGTGGAACGAGAGACCAAGACAAAGGCTTACTCTAAGGAGGGGCTGGGCCTGGCACAGAAGGTGGACCCGGCCcaaagggagaaggaggaggtcgGCAATTGGCTAACGAATACGATAGACACTCTGAACATGCAGGTGGATCAGTTTGAGAGCGAAGTGGAGTCCCTCTCAGTCCAGACTCGAAAGAAGAAGGGAGACAAAGAGGACCGCATCGAAGAGCTGAAGCGCTTCATCGAGAAGCACCGGTACCACATCCGGATGCTGGAGACCATCCTGCGGATGCTGGACAATGACACCTTGCCGGTGGACTCCATCCGCAAGATCAAGGACGACGTGGAGTACTACATGGACTCGTCGCAGGACCCCGACTTCGAGGAGAACGAGTTCCTCTACGACGACCTGGATCTGGAGGAGCTCCctacctctccctctgtctccccccatCCATCTCTTGTGTCTCTAGCCGGGTCGCTGGTGGCCACGTCCCCGCCGGGCCAATCGCTCCTGGACGACGATCTCTTCCATCAGATCTCCAGCGGCACGCCTACCTCCACCACTTCCTCCTCGCCCATTCCCGCCACGTACACTACGGAGAACTCTGAAGATGACAAGAGAAGGGGACGTTCGACAGACAGTGAAATCAGTCAGTCACCTGTCAAGAATGGCAACCCCTCTTCGTCGTTGTCTTCATCGTCCTCATCCTCCTCGTCCTCTTCATCATCTGCCTCTGGCGCCTCCTCGGGAGCAGCCTCTTCCTCGCTGGCCTCTATGGTGACCATCGCCGGAGGCGGCCAGGCCAACGCTGGGGGCAACAACAACAGCCTTCTGGGCAACATGGGGGGTCTCCTCTCCAACTCTGGCAGCTACAGCGACGCTACCCAGCAGCAACTTCAGCAGCATCACCAAACGCAGCAGGCCAGAAACTCAATCCTCTCCTCCAACGCCTCCTCCAGCCCCTCGAACAACATCCTTCTCCCCAGCCCCTCCGCCTCCTCGCCCGCCATCTCTAGCACAGCCCTCACACCCAACACCCAGCCGCAGGCTCCGTCAAGGCCCTCTCCGGGCTCTACCTTGGGGCTCGGGTTGGGCTTGGGCCTTGGTAAAGGCGGCATGAGTGGGTCACCGGCTGTCAGCCAGATGTCGGGCCTTGGCCTTTCAGGGATGCCGGCGTCCTTAAACACCATGGCCGGACTCCTGGCGGGCTCCACTTCGGCCCCCTACGCCATGGCAGCAGCAGGCTCCGGGACCATAGGAAGCCCCCTTGCAGGGAAAATCAGCAGCCTGAGCACTAGCAGCACTAACTCCAGCGCAGTGGGACCGGTGAGCGGACTCAGCGACAGGTCCACGGGCCTTTTGGGCTCTGTGCCCGGTGCAGTTGGTGTCAGTGGTGGGATCCTAGGCCTTGGCTCAGGACAGTCGACAGTCCAGGGCCCTCCACTGGTGTCCCCCAGTCCCATAGGAGGAGGCCTGGCCCCTGGAAGCAGCCTGGGAGCTATAGGAAGCATTGGAGGGAACTCTGGATCAGGAGCGCCAAGTAACAGCTTGGGCATCGGAGGAGGAAGCGCGGCGATTGCAAGGCCACCCAGTGGACAGAAGCAGAATGGTAGCACTAGTTACAGTGCTGTAGTAGCAGACAGCACACCAGATTCTGCCCTCAACATTGCCAGCCAATTACAAAGCAGCCAACCCTCGTCTTTGATCTCCACCACCAATCAGCTTAAAGACAGTGGCCCCAGCCTTTTAGGGTCCATGACCCTACCCACCAGCACTCCCTCGCCATCCTACATTGAGAGTAAACCTTCAGGCAGCAGTATGCTCAACGGGCCGCTCTCCTACACACAGGCCTCTGAAAGCATGAAGCCCCAGGAGCCTCTGagcactgtgaagtccatggccGAACAAGCGGCACTGGGCTCAGCAATGGAGGGAGAGTTGCCCCCTCTGCACCTCACCACAGACATTTTCCCCAGCACTACAGCGCCTCCAGGGCCTCCCTCGGCCCCCCAGCAGCCCTCGCTCTCGGAGGTCAGCATCCCCCCATCGCTGGGTGTGTGCCCGCTGGGGCCCGTACCCCTGTCCAAAGACCAGCTGTACCAGCAGGCCATGCAGGAGTCGGCCTGGACGCACATGCCCCACCCCTCCGACTCAGAGCGGATCAGGCAGTACCTGATGAGGAACCCGTGTCCCACCCTGCCTTTCCACCACCAGGTGCCACCTCCCCACTCCGACTCTGTGGAGTTCTACCAGAGACTGTCCACGGAGACACTGTTCTTCATATTCTACTacctagagGGCACCAAGGCCCAGTATCTGGCAGCCAAGGCCTTGAAGAAGCAGTCGTGGCGGTTCCACACCAAGTACATGATGTGGTTTCAGAGGCACGAGGAGCCCAAGACCATCACAGATGAGTTTGAGCAGGGGACGTACATTTACTTCGACTACGAGAAGTGGGGACAACGGAAGAAGGAAGGATTCACGTTTGAGTACAGGTACCTTGAAGACCGAGACCTCCAGTGACATAAGGCAGAGAAGGCGAATAAAAGGTTGGACTACTGTCGACATTCCTGGATTGAACTCAACACACTGGGAAGAGGGACGGATGCAGACGCGAGACTGAGCCAGTCTGAGAACAACATAATGCATTTGGAGCTCCTCCCTCTTTGCCTTGTGACGCCACACCCCTACAGTGATAAACCCCTCCCTCTTTTCCCATCAGGCTGTTTTTGATTTAGATTGAAGCTTTTAATCTCTTACCTGAACTGGAtcccttttttctttttttttggcaGATAAGAAATCATGATTTCATATGTTTGGTTGATAACGCACtctgtattgttttttttgtttatttcttcAAAACTCACCTACCAACCAAAGATGATTGGTCAAATCCGTCTTAATTCTCAGCAGTATGGCAGTCcaatttaattaattaataaataaataaataaataaaaatgttaaaaaaaaaagtgacaaGGCACAGAGAATGGCCAATCAAATGAGCCCTTGGGGGATGTTGGGTCCGGGGTGGTTCCAAAGCGTTTCACAGCAGTCAGGTCATCGCTGGGTTGTACACAAGCTAAAGACTAGATGGGGAAACGGTAGCATTTCCATGCTACAATAAGTGCTTATTGGGGTGACTCCATGTTTTACCCCTAATGAATACTCTCTTCAGGGTCACCAGCCCCGCCCTAATATTAAACTAATAGCTGCCTCTTGGGTACACCCAGCATTGACCACACTGCCATAAAGACTGCTGTAGTACAACATGGTAACCAATTAATTATTGTCCCACGTTACAACATTACGTTTATATTGCTGTGGTCAACGGCAACAGAAACCACACCAGCACTGAAGTGTCTCGTCTGTAGAGAAAGTTTACAGGTGTTTTTCACCCCAGAGGCGGGCTTTTACAATAAAACGCAAGACTGCCCTAGTAATAACAAGTCATTATTTTTGTTCCCGTCACTTTGATGATAATGTACAAATCAATTGTGATTGCACTTCCAGATTCACTTCAACCACCAGGTAGATATTTCCTTTTCTCAGGAAGTGTTTGATGGCTCATTATGTGAGGAAATATACCACGTCAGAAGCTCCATCATAGCAGCACAAAAAAACAACCCACAGAAATCAGACTGACACCTCCGGGCAATTTTGTTTTGTCTGCCCCAATAAGGCTTTCTATTCCCATTTAATGGCCATTTGTTTCATTTCTATAAGGCTTTTTAAAAATAGTATCCTCCAATGTTTGGAGTGCAATCTTAAGTTTGTCATTTTCATTTGCCTGTGTCATCTCAGAGATGTTTAAATTCTAAGGAGTTGAGAcccttttattttatatttttaaagaAAATAACTTGTCGGGGCACCATTCACTGACAAGCCTGCTGTTTTTAATGTTATCTTTACCTATTGGGTGAGCGGAAGGGAAGAGAAGTCATCCAGAGGTGAAATGTGAATCTCTCCCCCTCTGAAAGGGTGTTGTATAGACTGTCACGTTCATCCTTTCCGTTTTGTCCTTGTCTTCTGGACAGCATGACACTTGCAAAGTGGAGCTGAGAAAATTAAGTAAATATGAAGCATAACCATGAATAAAGGATTGTAAAATATTAATAAAATAATTACTTTTCAGaa

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1768479 lncRNA upstream 1033 38694862 ~ 38696088 (+) True LOC110496176
TU1768478 lncRNA upstream 1218 38693536 ~ 38695903 (+) False LOC110496176
TU1768512 lncRNA upstream 9570 38687260 ~ 38687551 (+) True G1545537
TU1768483 lncRNA upstream 12014 38682663 ~ 38685107 (+) True G1545508
TU1768487 lncRNA upstream 17086 38678237 ~ 38680035 (+) False LOC110496176
TU1768482 lncRNA downstream 3242 38716556 ~ 38720192 (+) True LOC110496812
TU1768538 lncRNA downstream 39250 38752564 ~ 38752793 (+) True G1545558
TU1768550 lncRNA downstream 81176 38794490 ~ 38794949 (+) True G1545570
TU1768557 lncRNA downstream 86344 38799658 ~ 38799909 (+) True G1545577
TU1768560 lncRNA downstream 89248 38802562 ~ 38802847 (+) True G1545580
XM_036952709.1 mRNA upstream 3148 38677975 ~ 38693973 (+) False LOC110496176
XM_036952710.1 mRNA upstream 3148 38677975 ~ 38693973 (+) False LOC110496176
XM_021571921.2 mRNA upstream 51496 38632507 ~ 38645625 (+) True LOC110496172
XM_021571916.2 mRNA upstream 65427 38617802 ~ 38631694 (+) False LOC110496171
XM_036952715.1 mRNA downstream 3171 38716485 ~ 38730617 (+) False LOC110496812
XM_036952716.1 mRNA downstream 3174 38716488 ~ 38730617 (+) False LOC110496812
XM_021571924.2 mRNA downstream 40751 38754065 ~ 38773708 (+) False LOC110496178
XM_021571926.2 mRNA downstream 40751 38754065 ~ 38773708 (+) True LOC110496178
XM_036952718.1 mRNA downstream 62934 38776248 ~ 38787830 (+) True LOC110496179
TU1768490 other upstream 5852 38690438 ~ 38691269 (+) False LOC110496176
TU1768508 other upstream 21117 38675027 ~ 38676004 (+) True G1545533
TU1768221 other upstream 492666 38193252 ~ 38204455 (+) False LOC110496158
TU1768223 other upstream 492666 38193252 ~ 38204455 (+) True LOC110496158
TU1767350 other upstream 1640634 37055983 ~ 37056487 (+) True G1544455
TU1769768 other downstream 403174 39116488 ~ 39120019 (+) True G1546605
TU1769824 other downstream 419805 39133119 ~ 39146252 (+) True G1546641
TU1769903 other downstream 645097 39358411 ~ 39372481 (+) False G1546713
TU1770013 other downstream 754140 39467454 ~ 39469365 (+) True G1546817
TU1770566 other downstream 1047899 39761213 ~ 39761503 (+) True G1547334

Expression Profile


XM_036952712.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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XM_036952712.1 Expression in each Bioproject

Bar chart with 21 bars.
XM_036952712.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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