RNA id: XM_021571939.2


Basic Information

Item Value
RNA id XM_021571939.2
length 2305
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC110496190
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39116591 ~ 39146595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTCTGAGTTTATATGTATATTGTGGGAATAAGACGAAGAGAGACGGAAGGAGGGAGGGGcagaaggagaggaaaagagcTGTACTGCattgccagagagagagagcgagagagagagaatagagacatACTAGACACATTTATCTCACCGTcagaagacagagaggatgtttCCAGTTGACAGAATAGGTCAACATTTCTGCTAAATGTGTTATACTTCAATCACTTGGAGAGTTGGGATATTAATGGCATTGAAGTAACTAGTACTTGCTTGTCATTATTTCAAACGATGTCAAGTCTttccttccacacctccctctCAGACACGTTGATTTACTGACTGACTAACCGGGGATGCTCCAGCATCGCGACGCTGcactctatctgtgtctctctgtgtgtgtgccagtgggtttgacggaggtaaggagagagagggagcgggggaGACAAAGGCAGAGCAAGaggagagagcgaaagggagcaagagagtgagagagagggagagacgtgcacacacacacacacacacacacacatacggaacgagacgggaggagagaagaggagtggagagaatgCCTGGCGAAAGGGTGGCGCTTCCTCGCTTGCTGCTTCCAGGGCctctgtgagagacagacaccATGGGCTGCATCGGCTCCCGGACCATCACAGCGGACGCTGTTCCTGTACGGAAAGATGGGGAGCAGcatgGGCGTGCCGAGTTTTCCTGGGAAGGAATCAATCTCTCTATGGAGGACACTTCCTCCATCCTGCCTCGTCTGAAGAGGAACTCCAACGCCTACGGGATCGGTGCTCTGGCTAAGTCCTCACTGACagGCGTGTCCCGTTCCATGAAGGATAAAGTAACTAAGCCCACTGCCATGGCCTCGGGCAAAGTAGCTCACATGATCGAATGGCAGAGCTGGAACACACCATCCACTGGGACTGAAGGGGCTGTGGTCACCAAAATCCCAACCTCGCAACGTGAGAAGGAGAGGCGGATAGAGAGCGAAATGTACAGTGAACTCAGTGAAGGAGAAAAGGAGGCCCGCTTCACTGCAGGATTAATGGCACAATTTGCCTTATCGGAGGCTACTTTGCTGGGCTGGAGATCTATGGAGGAAGATGGCCTTTGTGCTGGCTCCAAACAAGGCAGCGTGGCCCACCTCAGTGAGACCAACCAGGAGAGCATCACCAGCAGAGACCAGGCGATGCATCACTCCTCAGCCGACGTATGGCCCAACACCTACGTAGCCCAGGGCCTCTACTGCCTTTCCTCCTCCGACGCCTGGGAGCCAATTAGCAACGATCCCTCGGGCGTGGCCTCGCCGGCCGCCTACGTCATGGcaggtgggggaggagggacaCCCGGTGAGGGCTACGGTGATGTGGACAATGTGGGGGGCTAcatccagcagcagcagcagccccaACAGCTCACCCTGCAGCAGCAGAGCCAGCTGCAGCTCCAGCAGTTGCAGCAGATCCAGTTGTACCAGCACCAGCAGCTAATGCTCTACCAACAGCAACAGGCAATGGAACACAGACTACACAGTGCAAACCACTCCCTCCAAGCCACACCCAACAGCACCATTCACAGTCTAGGCCTGCCCACTCATCCTCGCCTGGCTGACCTGTGGGGCTCTGCGCAGGTGGAGATTGTGGGACACACGAGCGGGCCAATGGCTGACATGGTTGTTGGTGTGGTCGAGACCTTGGGGGAGGAGCCAGAGGAGGAGAGCGAATGCATTTCAGAgcaacaggaagaggaggagactaAGGACGATGAGGTTACGTTAACCTTAGAACCAACTTTGACCCCGTCCCCGCTTAGAGAAGACGCCACCCCGATTGGAGGCACCGGTCCACAACTAGCACGCCCAGAACCAATGGCAGAACGCATACCCTTTGTGGTCACACCCTGCATTGTCCAATCGTTGGAGGAGAAGGGCGAAGAGGTGGCCAAGGGGTCTATTGTTGCCGTGGCGACCAATTGAGGGGGATAGTCAGAAAGAGTGACAAACAGGATATACTTATCCATAATCCACCAATCAAGCTATTCTACTCCACATCCAGCTATTTACCCACTCTGGGACtgagaaaaaacaaaaatactttTCCTGGAGGAGAAAGTATTGGATAAGACAATGATAAAAGGGAACTTTAAagacaaatctgtcgttttgcagAAACGTGAGGACTTGTTTTGCCGTAATATTGAACTAATGAATTAAAATTGAAAGAATGGAGTATAGAGAAAGAAAAAGGACGCTTTGAAAAGATCAGTGCATTACAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1769700 lncRNA downstream 62971 39050510 ~ 39053620 (-) False G1546550
TU1769701 lncRNA downstream 62971 39050510 ~ 39053620 (-) True G1546550
TU1769731 lncRNA downstream 76664 39030040 ~ 39039927 (-) True G1546577
TU1769622 lncRNA downstream 180869 38932176 ~ 38935722 (-) True G1546480
TU1769663 lncRNA downstream 188717 38925113 ~ 38927874 (-) True G1546516
TU1770143 lncRNA upstream 85095 39231690 ~ 39232195 (-) True G1546932
TU1770144 lncRNA upstream 85964 39232559 ~ 39233080 (-) True G1546933
TU1770163 lncRNA upstream 91059 39237654 ~ 39238045 (-) True LOC110496197
TU1770254 lncRNA upstream 116326 39262921 ~ 39263179 (-) True G1547038
TU1770255 lncRNA upstream 117278 39263873 ~ 39264254 (-) True G1547039
XM_021571934.2 mRNA downstream 34868 39066864 ~ 39081723 (-) True LOC110496188
XM_021571929.2 mRNA downstream 144160 38964087 ~ 38972431 (-) True LOC110496183
XM_036952708.1 mRNA downstream 441214 38674378 ~ 38675377 (-) False LOC110496175
XM_036952707.1 mRNA downstream 451053 38648360 ~ 38665538 (-) True LOC110496173
XM_021571922.2 mRNA downstream 451154 38648360 ~ 38665437 (-) False LOC110496173
XM_021571955.2 mRNA upstream 86526 39233121 ~ 39245054 (-) False LOC110496197
XM_021571957.2 mRNA upstream 91391 39237986 ~ 39245055 (-) False LOC110496197
XM_036952730.1 mRNA upstream 100603 39247198 ~ 39261373 (-) False LOC110496198
XM_021571958.2 mRNA upstream 100603 39247198 ~ 39262456 (-) True LOC110496198
XM_036952732.1 mRNA upstream 122989 39269584 ~ 39295940 (-) False LOC110496200
TU1769526 other downstream 328790 38776284 ~ 38787801 (-) True G1546396
TU1769511 other downstream 342907 38768097 ~ 38773684 (-) True G1546385
TU1769487 other downstream 440562 38674441 ~ 38676029 (-) True LOC110496175
TU1769405 other downstream 553273 38559649 ~ 38563318 (-) True LOC110496167
TU1769139 other downstream 902542 38165250 ~ 38214049 (-) True G1546053
TU1770682 other upstream 479180 39625775 ~ 39631098 (-) True LOC110496208
TU1770674 other upstream 496260 39642855 ~ 39646533 (-) False LOC110496816
TU1770675 other upstream 496260 39642855 ~ 39648014 (-) False LOC110496816
TU1770684 other upstream 538192 39684787 ~ 39688681 (-) True LOC110496816
TU1771745 other upstream 1239375 40385970 ~ 40391883 (-) True G1548367

Expression Profile