RNA id: XM_021571958.2


Basic Information

Item Value
RNA id XM_021571958.2
length 4028
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110496198
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39247198 ~ 39262456 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCAGAAGGCACTCCTTCAGAGAAGTTTTCAAAGTACATAATATACATAAAATGTGGAGCAGAAATGCTTCCCGGTAATGTGGAATTATGTCAGACATGCTATGATTGGATTGATACTATCTACTTGGCTGTTTTGCAGAGAAACGGCCAACTGATGCTGTCCTTCGGCAAGTCCGTTTGTATTCCTTTCGTTCTATTTCCTAACATCTTTCGATATGGCAATATTCAGATACGCAGGACGACTTCAAAGAGGACCACCTGGAACTCGACCATTGCTTCTTGTAGATGACGTCATGTTTGGAAGTAGCCCACCACTTTGTTTAGGCGACCAAAGGTATTGAATGTAGCTACTACCACTGATATTAACCATGTGCTAATTTACTAGATTATGTATGCTACCATCAACAAAACTAGATCAACATTGTCGACAATGTCATTGGCAGACGATGTCGAATGGCCATGGTCGCCGGTGGAGACAAAGGCGCTGATCTCTGTATGGTCAGACGAACAGAATATTCTGAAAATGGAGCAAACGTGTAGAAACAAACATGTTTACAGGGAAATTTCGGAGCGGCTAAATGACCTTGGCGTCAAACGGACGTGGAAGCAGTGTCAAAATAAGATGAAGGCCTTGAAGTGGAGATACAGACAAACACGCAGAGACCCAAGCAGTAGTGACCTAACAACCTTTCCATTATTTTCCGAACTGGACGAATTTCTCGCCGCCATGCCTGATCTGACTGAGTCCAAGGAAACTGGCGACGAGGAAGATGGTCGTCCTCTTCCTCTGTCGTCTCTGCGTCTTCTGGTTCCTCCATTGCGGCTGGTGTCCGCAGCTCTATGGCAAGTTGTTCAGCGCAGAGACACAATGGACTACGGGTTGGTGGAGGAGTTTGTGACCACTGTGTTGGAAATAACCCCTGATCTGATGAGTTACAGAGAGAAAGCCCAGCTCGTCATGGGCCTGCAAGCACAGCTGGTTCTGGAGTTGTGTCGCTCTGATCATTCAGCCGACCCGGAGACCATCCAGCCACACCTGAGCAGGATGAGGACCTGCATCATCACTCATAGAGAAAAGGAGATAGATACAGAGGTGGAGGCATCAGAGTCAAACTTCTTGGAACTTGTCCAAACTCTTCTAGATGACCCACTTGAGAGGGAACACTTCTTCCAGGAAGTTTTTCCAGAGGAATTTGGCCCCATGTATGACACGGCACTGCAGACTCTGATGTGGGAGTTCCTCTCCAGGCTGGAGAAACTGCTCCCAACACCAACATTTCAACAGACTGCATCCTGGCTCAGACCTGCCCCCTCTATGCTGAAGGAGTGTGCACAGTCTGTGACTCAACCTCAGCCTTTGAAGACTCTCCTCCAACACCACAGATGCCATGGCCATTTGTTCGCTAATGCTCATTCATCTTGTGCTGATGATTTCATCCTCTCTTCACTGTCTCACAAGTTCTCGGAGAGGGTGGAAATGGACATCGATGAAGCACGCTCACATAGCCAGTCTGTAGCCACATGTGCACCCAGAAAAGAAAGGGACACTTTGATAGAGCAAGATCATGCAGAGAAGGAGCTGGGGAAGAGTTTGGACACGGTTAAGAAGGCAGTGGAAATGACGGATAGAAGGAACGAAGAATGGGGAGAGGAGAACTATGAGGAGAGACTGCAGTATCAGTTGGCTTATAATGTTTTACAGGTCGAGGTTGTCGATGGAGAAGACATGTCCTCAACGTCATCGACGACAGCCGACAATGTCGGACAGACCTGGACCCCAAAGGAAACGGAAGCGCTGATCTCTGTATGGTCAAAGAAACCGATTCTTCAGGAGATGGAACGGAGTTACAGAGAAAAACATGTGTACGGTGACATTTCAGAGCAGATGAAGGAGCTTGGCGTCAAAAGGACGTGGAAGCAGTGTCAAACAAAGATAAAGGACATGAAGCACCGCTACAGACGAGCACTGAGGAACCCAAGCAGTAGTGGCCGAGCGACCTGTCCGTTCTTTTCTGAACTGCACACCTTTCTCGCCGCCACGCCTGATGCAACTGATACCCAGATGCCTGAGTCGAAGGAAGCGGTCAAGGTTTCGGATCCAGAAGTCATGTTCTGCGATCAGGATGAAGGGCCTTCTGTGGATGTCAAGTTAGAGAATCTACACGAGGAAATGGCTTCCGGAAAGGAGACACACAAGACACTCACCGGAGTGAGAGCAGACGCGAGGAAAGGGGGCGAGGCTTTTCACAGCCCTCAGAGTGACAGCAGGGTGAAAATCGGAGGAATATCCCACCGTTGCGATCAGATGGTCGAAGACACGTCAGACTTGGACCTTCAGCCCGTAGTGATGTTGACGCAACTTGATGAGACCCTTCTGATGACCGGTGGTGATCCTCGTCCTGCTTCCCATACCACGGGGCAGTCTTCGAAAAGAAGCAAGCGCGTCAAAATATGCTCCttttgtgggaagagttttgttgaAGCAAAGGATTTGACAACACACATGAGATCTCACACTGAGCAGAGCCCTCACCAGTGTGGTGAAGGCTTTGACCATCTGGACGACTTACAAAAACATTGGCAGAATGATTGTGAGGAGATGATGAAACAGGAGGTCAATGAACATCAGCATGGAAAGGACAGGATCTCGGGAGAGTCCAGTAATGCAAGTACTGATCCAAAAACATGCCATCTATGTCATGAGACCTTTGAATTTCAGTGTGTGTTGAAAAACCGTCTTATTGTGTTTCACAAAGGCAAAAGCCTTTATAAGTGTCCTGTGTGTATGAAGGGTTTTGGGTACCTCCGTGATTTGGAGAAAGACCAGAGTAAAAAAAGAGGTCGTCCTACAAGTGATGCCGTCAAAAAAAGGAAGGAGTTGGGGTCAAATGGAAATGTTGCCGGACTGAACTCGACCCCCAACAAGTGCCCTGACGTCTTCAAGTGCTCCTTTTGTGAAGAGATCTTTTCTCGGTGCATGGACCTGAAGAGCCACTACAGTCGTACTCATCAATTTACTGGGCCGTTCCCCTGCCCTTCTTGTCAGACGACTTTTGTTTCGTTAACTGAGCTGCGCTTACATCAGAGAAATGAGTCCACTCCTTACCAGTGCTCTTTGTGCCAGCGCTCATTCTTATCACTCGACAAGCTGACTGTTCATGAGAGAATTCACACAGGGGAAAAACCGTACCTCTGTGCTGAGTGTGGAAAAAGTTTCCGGGATGCAAAAACCCTGGAAGAACACTCTAAGATTCATGTTGAGGGAGAACTCCACACCTGCTCCCATTGTGGGAAAAGTTTCAAGCGAAAAGAACTATTGAAACAACACATGTTAAATCACAGAGATGCCGCTTTCATCTGCCCAGACTGTGGGAAGAAGTTTTTTCGGTTGGTATGGTTAAGAAGGCATATGTTAATCCACACTGGCGAGAGACCGTTCCTCTGTGATCTCTGCGGGAAAGGTTTCAAATCTACAGTCGAATTGAGATTGCACACCCGGACACACACTGGAGAACGGCCATTCAAGTGCCCCGAATGTGGAACAAGTTTTAAGCAGAAGTGTCATCTGCAGATACATCGGCGGACACACACAGGGGAGCGGCCGTATCCGTGCACCGTATGCGATAAACGCTTTTATGTCAGCAAAGATAGAAAACGACATATGCTCATCCATACTGGAGAGAAGCCGTTCAAATGTCAAGTGTGTGGCATGGCGTTCAACCGTAAAGGGCATTTGAGGGTACACCAACAAACCAAGAGGTGTTCCTATAGGCACACAAGTCCCCTACGTAACACATCATTATAATAAGTGGCTTCCTGACTGACAGAACTAGACCTGTTCCTGTAAGCCACATTTTAAGATGTGCGTCCCGTCAAGTAATAATATGAAGTTAAGAAAAAGTGTTTTACAAAGTGACAACAGGAATATAAACCACGGAGTAGTAGCctatgtttgttttttgttaAAAAACAACTTAAAAGGACGTGTTATGTATGTGACTgttattaaatcgttttttaaaGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1770163 lncRNA downstream 9153 39237654 ~ 39238045 (-) True LOC110496197
TU1770144 lncRNA downstream 14118 39232559 ~ 39233080 (-) True G1546933
TU1770143 lncRNA downstream 15003 39231690 ~ 39232195 (-) True G1546932
TU1770135 lncRNA downstream 59572 39117754 ~ 39187626 (-) True G1546924
TU1769701 lncRNA downstream 193578 39050510 ~ 39053620 (-) True G1546550
TU1770254 lncRNA upstream 465 39262921 ~ 39263179 (-) True G1547038
TU1770255 lncRNA upstream 1417 39263873 ~ 39264254 (-) True G1547039
TU1770257 lncRNA upstream 6160 39268616 ~ 39268818 (-) True G1547041
TU1770270 lncRNA upstream 112120 39374576 ~ 39384675 (-) False G1547052
TU1770271 lncRNA upstream 112120 39374576 ~ 39382376 (-) True G1547052
XM_021571957.2 mRNA downstream 2143 39237986 ~ 39245055 (-) False LOC110496197
XM_021571955.2 mRNA downstream 2144 39233121 ~ 39245054 (-) False LOC110496197
XM_021571939.2 mRNA downstream 100603 39116591 ~ 39146595 (-) False LOC110496190
XM_036952732.1 mRNA upstream 7128 39269584 ~ 39295940 (-) False LOC110496200
XM_036952733.1 mRNA upstream 7128 39269584 ~ 39295940 (-) False LOC110496200
XM_036952734.1 mRNA upstream 7128 39269584 ~ 39295940 (-) False LOC110496200
XM_036952735.1 mRNA upstream 7128 39269584 ~ 39295940 (-) False LOC110496200
XM_036952736.1 mRNA upstream 7128 39269584 ~ 39295940 (-) False LOC110496200
TU1769526 other downstream 459397 38776284 ~ 38787801 (-) True G1546396
TU1769511 other downstream 473514 38768097 ~ 38773684 (-) True G1546385
TU1769487 other downstream 571169 38674441 ~ 38676029 (-) True LOC110496175
TU1769405 other downstream 683880 38559649 ~ 38563318 (-) True LOC110496167
TU1769139 other downstream 1033149 38165250 ~ 38214049 (-) True G1546053
TU1770682 other upstream 363319 39625775 ~ 39631098 (-) True LOC110496208
TU1770674 other upstream 380399 39642855 ~ 39646533 (-) False LOC110496816
TU1770675 other upstream 380399 39642855 ~ 39648014 (-) False LOC110496816
TU1770684 other upstream 422331 39684787 ~ 39688681 (-) True LOC110496816
TU1771745 other upstream 1123514 40385970 ~ 40391883 (-) True G1548367

Expression Profile