RNA id: XM_036952756.1


Basic Information

Item Value
RNA id XM_036952756.1
length 7502
RNA type mRNA
GC content 0.52
exon number 21
gene id LOC110496815
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39467426 ~ 39566572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacgattgGACTGGAGAGAGCTGAAGAGGTATGGAGGtacaatgaagagagagagagagagcaaggagcTTGCTGGTAGTGCTGAATGCAGTCCGTTCCTTCGCTAGCCCCACAGGAAATACAGCGAGCCCAATACTGAGGGACAGCAGGACAAGAGGCGTTAGATAGAAAAAAGAGGAGTCAAAAAGAACAGGGGAACAGTTACACAGCTTTCACTCATCTCCAAATGGACTGGTCTTTATGAAGAAAAGGAGCACCACAGAAGCCCAGAGAGGAGGGGGTCGATTCCTGTCATCTTCTTGTGACAGCCTGTGGAGCCGTAACCAGGGTGTCATTGCGACAGCGTTTGCTCTGCATTTTATTTGAGTGTGTGTATCCGTCTACCTGTCAATAGAGTCTGGAGCTGTGATTGGCTTCATGGAAAGAAAGTGATCTGTCGTTCTGTTCGTAAAAGGGTATTTGGACAGGACGGATTTTGGGGGATTCGGGGAATGCTTAAAGGACACAGACCTGATAGGGTCATAGTGTCTCTATTGCGCCTGCAACGCGcaactctgctcttctctcctctgctcctctcctcggCTTTCTCCCTCGTttcccccccttcctcctcctcccattctCTCCTTTCGCTCTCTTTTTCCCGTTGCTGGCACACACGCTGGTAATAGCCGTCCGTTTGGCATTTGGCTGAGGGCTCCCTCACTCGCTCTCCGTGGCAACCGCTAACTGCTGATCTAGCAGGGGCTAACCGTTCGTTCGCCCATGGAAAGGGGACTGAGATGGATCCCGAATCACTCCTGGAGACCTTTTCACCTGGCGTCCATTTCCTGCCCTGACAAGGACCACACTTCCCTCCATGGGGCCACTCTTCTGTGTGATAACCTCTAGAGTACCCCGCATCCTTCACACCTAAAGACTTTGCATCAAGCTTGCTTCCTTTCGGTGGTGCCATGGCAACCCGTTCCGTTCACAGCCTCAGTGTTTTGCTGCCACGTTGAGTGACGAGCGGATTTGGGTAATTTTTTTATGTATGATGACAAGTGGATGTGAGAACTAAAAGACAGGAAAACCATTGGTACCCGTGAATTTCCTGCCAAGATGTCTCACACGAGGTGATGCGGCTGTCATGTAGGAAGTACAGTAATGTATTGGATTCCGAAAATCCTTTAGttccagataatcttgtttcaaCATAAACACTCTTTGTATCCTTCTGTGATCTACAAAGCAGTGGATTCACTCTCACAACCCAGAACTGAGCGATCGTTTGAAATTGCAACTAGGTTATTATCTGCCCATCTCTTTCATATTCCCATCATTTCACGTATGCTTTTGAGTAGCCTAATTATGTTTGGCTTACTCTAAGAGACTGCGTGAAAATCTTCCGCCCTCCCGGTGAGAAGTACACCTGAAACAAAccaattacaacaacaacaaaaggtgTAGATAAGGAagggagaggtagaaagagagagattaaccAAGAGTGTCAAGCGGGGGAACAGGTGTGGAGTGTCTAAAagagaaaagtgagagagaggccGGCTGACATTTTCAGAAGCCCGGttatagaggagaggggagagaaaggagagaatcCGTAGGGATGGTTGAGCAGGGGGATGGATAGAGTGGGGGGTCTGGGTAAGGATCAGGGGGCCATTTCAGTCAGATAGTGGGGTAACGGTGGGATCCCAACCTTTAGACTGACACCCACCCAGTGTCATTGGCATTCTCTGCACTGCCTTCCTTGCTATTCGTCAGGCGAAGGGGAGAGTGTAAGAgaacaaaaagagagaggggggtgggggagtgaaagagagagagcaaaaacgAGTGCTTCTGAATGATTGTACTGTCGCCACAACCGGGGCCAATTAAGAGAATTGCATTATATGCCTTAATCTTGCCAGTCAAGTGGGAtagatatagacagagagaggaagagagagggaacccgaaagagagaggggtacagGTGCCACAGACAGATGTCATTATCGCCTTCCTCTTTAATTTAGTTTTTTTCTTTTCATCTCGGAACGAGATCCCTTTTGAGGACTGTTCGCCCCGTTCGCCGCAAGGGAAGGCGGGAGAATGAAAGAGTTATTTTTTTCCAATTGAAACAGAACGTTCTTTTTCCTCCCGGCTCTTTTATTTGTTAACAGCACACACTCGTTCATTCTGCCGTCTGTTCATCGCTCCACCAGGGCAGAAAGCTAGATACTTCACCTTCACCTCCGTCTAAATCCCCTTTCCCCACTGCTGTTGGATATTTTTCACTCCTGTAGAAAATGCATCATTTTGCACCCTGAGGGAATCATTTCCTATTAAAGAACAAACCCAGGGGTTGGACATTACTCCTATATAGGTTTCCCCCGTAATACACCGTATCACCATATCAAAAAGAATAGACTACTTGGTGAAAAGAAACAGAAAACCCTCCCAAAGCCCAGAGACCCAGTCCCTCACGACACCCCCCAactcctttctcttcctcccctccctccgctCCTCTCGGATCTTACTCCTCTCGCTCCATTCCTTTTATCCGTGGGGGCATCCCACTCCCCGCCGGGACTAAGCCGGCTTGCATCCGCGGGAATCTTTTGATATCGGCTCCTGGTGTCGTCTGATTCATTCTCAGGTGGTGGACCAGGCAGCCAGAAGACCGTTCTCCATGAGGAGTAGTGGAAGATGCCGGCTCTGCCAGCGCTGCTGCTGTCGATTTACTTCCTCTTACTGTTGCTGACCATGGCCCCGCTCTCTTTCACCCAGGCTCCCGCACTCTCCTCTGTCAGAATGGCGGCCATTTTGGACGACCAGTCGGTGTGTGGGCGAGGGGAGCGGCTAGCGCTGGCCCTGGCCAGGGAGAACATTAACAGTATTTTTGAGGGCCAGTCCAGAGCCCGGGTGGAGGTGGACATCTTCGAGCTGCAGAAGGACTCACAGTACGACACCACCGATACCAtgtgtcaGATATTGCCAAAGGGGGTGGTCTCTGTGATTGGCCCCGCCTCCAGTCCTGCCTCAGGGTCAACTGTCAGTCACATCTGTGGAGAGAAGGAGATCCCTCATGTGAAGGTGGGCCCGGAGGAGACGCCCAAACTCCCATACCTCCGCTTCGCCTCGGTCAGTCTCTACCCCAGCAACGAGGACCTGAGTCTGGCTATTGGGGCCATCCTCCGCTCTTTCAGCTACCCCACCGCCAGCCTCATATGCGCCAAGGCAGAATGCCTGCTGCGATTGGAGGAGCTGGTGCGGCGCTTCCTGATCTCCCGGGAAACACTGTCCGTTAGGATGCTGGACGAAAGCCTGGACCCCACCCCCCTGCTAAAGGAGATTAGAGACGATAAAGTGGCTACTATCATCATCGACGCCAATGCTTCCATCTCCTACCTCATCCTCAGAAAGGCATCAGAACTGGGGATGACATCAGCGTTTTACAAGTACATACTCACCACAATGGACTTTCCCCTGCTGCGATTGGACGACGTGGTGGATGACCAATCCAACATCGTAGGTTTCTCCATGCTCAACAGCAGTCATCCCTTCTACCTGGAGTTCATCAGGAGTCTCAACCTGTCCTGGAGGGAGGGCTGTGACCTCAGCCCCTACCCTGGCCCGTCGctgtCGTCGGCTCTTATGTTTGATGCGGTGCATGTGGTGGTGGGGGCGGTGCGTGAGCTCAACCGGAGTCAGGAGATTGGAGTGAAGCCGCTCAGCTGCACCACTCCTCAGATCTGGCAACACGGCACCAGCCTGATGAACTACCTGCGCATGgTGGAGTATGATGGGTTGACCGGCAGGGTGGAGTTCAACAGCAAAGGCCAGAGGACAAACTACACCCTGAGAATCCTGGAGAAGCACCGTGGGGGTCATAAAGAGATCGGGATCTGGTACTCTAACAACACATTGGCGATGAACTCGACATCTCTGGACATCAACATGTCAGAGACGTTGGCTAACAAGACGCTCATCGTCACCACCATATTGGAGAACCCGTATGTGATGCATAAGTCCAACTACCAGGAGCTGCGGGGAAACGACCGGTACCAGGGCTTCTGTGTGGACATGCTAAGAGAGCTGTCGGACTTGTTGAAGTTCTCCTTCAGGATCAAGCTGGTGGATGACGGGCTGTACGGAGCGCCTGAACCGAATGGATCCTGGACAGGCATGGTGGGAGAGCTCATCAATAGGAAAGCAGACCTGGCGGTAGCTGGGTTCACCATCACCTCAGAGAGGGAGAAGGTCATAGACTTCTCCAAACCCTTCATGTCCCTGGGCATCAGCATCCTGTACAGAGTCCATTTGGGACGGAAGCCAGGTTATTTCTCCTTCCTGGACCCGTTCTCTCCGGCCGTGTGGCTCTTCATGCTGCTGGCCTACCTGGCTGTCAGCTGTGTGCTCTTCCTAGCCGCCAGGTTGAGTCCGTATGAGTGGTACAACTCCCACCCGTGTCCTATGGGGCGAAAGGACATGCTGGAGAACCAGTACACCCTGGGTAACAGCCTGTGGTTCCCCGTGGGAGGCTTCATGCAGCAGGGCTCTGAGATTATGCCCCGCGCCCTGTCCACGCGCTGCGTCTCCGGGGTCTGGTGGGCATTTACTCTTATCATCATCTCCTCCTACACGGCCAACCTGGCAGCCTTCCTCACTGTTCAGAGGATGGAGGTGCCCATCGAGTCTCCTGACGACCTGGCTGACCAGACAAACATCCAGTATGGTACCATCCAAGGGGGCTCCACCATGACCTTCTTCATGAACTCGCGCTACCAGACGTACCAGCGCATGTGGAACTACATGCACTCCAAGCAGCCCAGTGTGTTTGTGAAGAGCACGGAGGAGGGCATCGCCCGCGTGGTCAACTCCAAATACGCCTTCCTGCTGGAGAGCACCATGAACAAGTACCACCGCCGCCTCAACTGTAACCTCACCCAAATAGGCGGTCTTCTCGACACCAAGGGCTATGGCATCGGCATGCCCCTGGgCTCGCCGTTTAAAGAGGAGATCACTCTGGGGGTGTTACAGCTGGCAGAGAACAACAGGCTGGAGATCCTGAAGAGGAGGTGGTGGGAAGGGGGGCAGTGCCCCAAGGAGGAGGACCACCGAGCCAAGGGTCTGGGCATGGAGAACATCGGGGGCATCTTCGTGGTGTTGATCTGCGGCCTCATCATCGCTGTGTTCGTGGCCGTCATGGAGTTTGTGTGGTCCACCCGCCGCTCGGCAGAGACAGACGAGGTACGCCCTCACTCCTGCCCCGGCCAAAACCACAGACGCACTCCAGTGTCAGTGTGTCAGGAGATGCTGACTGAGTTCCGCAACGCCATCTCCTGTAAGAAGAGCTCACGCTCTCGGCGGCGGCGTCCCTTGGCCAGCACTGGCGGCGTCTTGCGCCACCCCACCCGCCTCCAGCTGGGTGTCCCGAGACCCATTCGCCTAGTCCGCGAGATGCGCCTCAGCAACGGCAAGCTGTACAGCAGCTCGGGCCACCTGACTGGTGGAGGGGGAGCAGCAGGGGGGGGGTGTGGGGCCGTAGGGGGGGGGCCCTCAGACATGGGTCCGGGGCCACAGCGCCTCCTGGAGGACCCGCTGGGTgccaacaccacaacacccccTCCCCTGCCCGAGGCTGCCACGGCGCCACCCTCCCGGAGCTGTGCCCATGTGCGGATCTGCCAGGAGTGTCGGCGCATCCAAAGCCTGAGGTCAGCATCGTCCTTCTCACGCATCCCGCCCCACCTCGGCCCACACTCTTCCATGTCCCTGCCCCGCCTCACTCCACCCCCTCCACCCTCATCCACCAACACCGACAGCGAGGGGGGCGGCTGCGGCACAGCGAGCCCCAAGCGACCCAAACCTAAGCCCACGCCCCCTCCGCGGCCCTTACCCCCGGCGAAGGCGCCCACCACAGACCTGCTGCTGGGGAAACAAGACTGAGGAGGGACGGAGGGATCGGACATGTGACAAGGGTCGAGGGTTAAAAGTCAAATGTCAGGGTTCAACAGAGAAACGCGTAGGAACGAGGAGCGGAAGGGGCTGTGAGCTTGTAGCGCATTGACACGGCAGGATCAAACCACTCTGACCCGTTTGAGGGGGTTATTATCCAGGGCAGAATTTGCGGCGACACCAACCTAGTCAAGGCCGTCCTCCTAAACCAGGAATCCTGCTAAGCAATGGATCAGGCTGTCTATGGAGTGGGAAATGACTTTTGACCACATATGACCGTTAGCTGCCTTTACGGTGCAGTGAGAGACCACGTGGTGACCGTTCAACAGTAAGCATAAGTGTGTTCAAGCTGCCTGGTTTGGCTTTTGACCTTCTCTTTCACTTGGATCTGATGGGAGGACTTGACCTATCCAACAAGCGCTGGAGAGATTCAGGGGACCATAGAGACTTCAAACACACAGAAACTCTTGTGTTTAAAGAAGTCGGTTCTCGCCAAGAAGATGCATATTTTTTTCCCCAGAGCAGCTGGAAGAGCTTGAACTTTGGAATTTGTGTTTTTGATTTGCTTTCTGTCAGAGTCTAACTCGCCTAATTTattttctatctttctttctttctttctttcgaaTATCTTTTTATTGCCGTCATTGGTTTCTTGGTCACTGTTTAGTTATTGACTCATGTTTTTGGTCTGTCATTAAAGATCCTTACGAAAGCCAATGTGGAGATCATGACCATTCGTGCGTAAATGAGGTCTCTTTCCCACCAGTCACAAGCCCGGGAACAAAGTTCAAAGGTCAATAGTCTAAAGAGGCCTTCTCTAAAACACATTCTGACAATACACCCAGATCACAGGACTCAATATTACAGTCCACGTTTGCTTGTCAGAGTAGCAGAGAGTGGCCTTGCCTTCCACTGATCAACAAGCCAGTTTTGCCACAGAGTTTTAAACACAGAGTTAGTGTATCATAGCCCCATCAAATTACAACGCAACAGAGCTACAGAGCACAGTTAAACAACACGGTACTTTGTGAATCCTTCAAACAGATCAGAATTCAATAAACTGGATATAAATAGCAAGAGAAAAGGAGAATGCCAAACTCAGCACAAGGAATGACAAATGAGACAAAAACGATGATTGCATACGTACAAAGCAGAACAGGAGAAACGTAATGCACAGTCCTGTCTGGCCAATGGTAAAAGGAAACCTGTGTtaatgtgtgttctgtgtgaTTCATATGGGGGtcataagtgtgtatgtgtgtgtgtgtgtgagtgcatacaGAGGAAAGAATGGTGTCGAAGTGTATTTTGTCATATTtaatgctctttctttctctctcattttccctCAGATTTCTATACCAGTGCTAAATGGATTATTAAGAAAATGACGACAAATGTATATTATTAcgattatattgttattattactactGTTGAAGTGTGGGGTACTGTAAGAGGGGCGTAGTCGTCTGATGTTAAATATATAGACACACAAAGGTATttggaataaaataaaaataaacagtatACAAACGTCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1770351 lncRNA downstream 13242 39453904 ~ 39454184 (-) True G1547132
TU1770350 lncRNA downstream 13909 39453288 ~ 39453517 (-) True G1547131
TU1770326 lncRNA downstream 50621 39416550 ~ 39416805 (-) True G1547107
TU1770323 lncRNA downstream 52993 39414173 ~ 39414433 (-) True G1547104
TU1770322 lncRNA downstream 53295 39413925 ~ 39414131 (-) True G1547103
TU1770421 lncRNA upstream 195 39566685 ~ 39566906 (-) True G1547195
TU1770427 lncRNA upstream 2609 39569099 ~ 39569473 (-) True G1547201
TU1770691 lncRNA upstream 24603 39591093 ~ 39591317 (-) True G1547440
TU1770692 lncRNA upstream 25902 39592392 ~ 39592704 (-) True G1547441
TU1770693 lncRNA upstream 27818 39594308 ~ 39594747 (-) True G1547442
XM_021571973.2 mRNA downstream 15262 39433785 ~ 39452164 (-) False LOC110496206
XR_005037469.1 mRNA downstream 15262 39433785 ~ 39452164 (-) True LOC110496206
XM_021571971.2 mRNA downstream 53960 39389215 ~ 39413466 (-) True LOC110496205
XM_021571970.2 mRNA downstream 83936 39376443 ~ 39383490 (-) True LOC110496204
XM_021571965.2 mRNA downstream 94921 39358398 ~ 39372505 (-) True LOC110496202
XM_036952760.1 mRNA upstream 48180 39614670 ~ 39616834 (-) False LOC110496207
XM_036952759.1 mRNA upstream 48180 39614670 ~ 39616835 (-) False LOC110496207
XM_036952761.1 mRNA upstream 48180 39614670 ~ 39616836 (-) False LOC110496207
XM_036952762.1 mRNA upstream 48180 39614670 ~ 39616840 (-) True LOC110496207
XM_021571977.2 mRNA upstream 59281 39625771 ~ 39641801 (-) False LOC110496208
TU1769526 other downstream 679625 38776284 ~ 38787801 (-) True G1546396
TU1769511 other downstream 693742 38768097 ~ 38773684 (-) True G1546385
TU1769487 other downstream 791397 38674441 ~ 38676029 (-) True LOC110496175
TU1769405 other downstream 904108 38559649 ~ 38563318 (-) True LOC110496167
TU1769139 other downstream 1253377 38165250 ~ 38214049 (-) True G1546053
TU1770682 other upstream 59285 39625775 ~ 39631098 (-) True LOC110496208
TU1770674 other upstream 76365 39642855 ~ 39646533 (-) False LOC110496816
TU1770675 other upstream 76365 39642855 ~ 39648014 (-) False LOC110496816
TU1770684 other upstream 118297 39684787 ~ 39688681 (-) True LOC110496816
TU1771745 other upstream 819480 40385970 ~ 40391883 (-) True G1548367

Expression Profile