RNA id: XM_036952762.1



Basic Information


Item Value
RNA id XM_036952762.1
length 912
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110496207
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39614670 ~ 39616840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATTGCCATGAAAAGCCATTCATATCTGGAATTTGAACACGCCTCAAATCAGCTCTATGGAACACCATTACCAGCTAACAGTTGTTTGAAATTGCTATTTATTTGTAGCTGACAGTGTAAAAGTGCTCCTCTTTCTCCAGATGAACAGAACCTGCAGAACTTACCAGTGATTCACATTAACAGTACCTTGTTTATAGGagaccatcatcaccaccatggCAATGTTGACCATATCTCTGCTGCTCTGTGCTGCCGTTGCTCTGAATGGAGCAACAGGAGctaagggggaagaggagggagtagtggcagcagagaacaggaaCCAATGCCCCACAGGCTGGTTCCAATTTGGATCGCGCTGCTTCATGTTCGTCGAGACTGCAAGGTCATGGCCCCTAGCAGAGCGCCACTGTGTGTCCCTTGGAGCAAACCTGGCGTCTGTGCACAGCTCTGCGGAGTATCAATTTCTACAGGAAGTGGTGGCGAGCAAGACTGGCGGTTTCTCAACTCCCTGGATCGGAGGATTTGATGCTGTTCAGGACAGACTATGGTTTTGGAGTGACGGCTCTGAATTTGATTACCAGAACTGGAAGAAAGGAGATCCCAATAATAGCGGTGGCAGAGAGCCATGTATAGTGATCAACTGGGGAGATGAATATCGCTGGAATGATATAAACTGTGGAAACAGCTTTCCCTCGGTGTGCTCCAAAAGAATGTGTGAAATCCAGAAGAACTGAAACCAACAATGATACTCCATAGTGCCAACATCCAACTGAACACTCTTTATGGCAAAGTCACATTTTTTGTAAAGATGAGTTGTTTCTGTCAACTGTAACTTTGAGTTAGTGGTTGTTCATATATGTTGAGTGATGCTTTTGTTGTTTATTGTCAATAAAACGGGAGTAGACATTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1770706 lncRNA downstream 3123 39609934 ~ 39611547 (-) False G1547454
TU1770708 lncRNA downstream 3123 39610384 ~ 39611547 (-) True G1547454
TU1770705 lncRNA downstream 4384 39609934 ~ 39610286 (-) False G1547454
TU1770693 lncRNA downstream 19923 39594308 ~ 39594747 (-) True G1547442
TU1770692 lncRNA downstream 21966 39592392 ~ 39592704 (-) True G1547441
TU1770733 lncRNA upstream 61764 39678604 ~ 39679129 (-) True G1547474
TU1770762 lncRNA upstream 119951 39736791 ~ 39736990 (-) True G1547501
TU1770771 lncRNA upstream 133479 39750319 ~ 39750552 (-) True G1547510
TU1770799 lncRNA upstream 190179 39807019 ~ 39807225 (-) True G1547537
TU1770812 lncRNA upstream 220681 39837521 ~ 39837785 (-) True G1547550
XM_036952757.1 mRNA downstream 48179 39467426 ~ 39566491 (-) False LOC110496815
XM_036952752.1 mRNA downstream 48180 39467426 ~ 39566490 (-) False LOC110496815
XM_021571977.2 mRNA upstream 8931 39625771 ~ 39641801 (-) False LOC110496208
XM_021571978.2 mRNA upstream 8931 39625771 ~ 39641803 (-) False LOC110496208
XM_036952766.1 mRNA upstream 26001 39642841 ~ 39688739 (-) False LOC110496816
XM_036952767.1 mRNA upstream 26001 39642841 ~ 39688739 (-) False LOC110496816
XM_036952765.1 mRNA upstream 26001 39642841 ~ 39688750 (-) False LOC110496816
TU1769526 other downstream 826869 38776284 ~ 38787801 (-) True G1546396
TU1769511 other downstream 840986 38768097 ~ 38773684 (-) True G1546385
TU1769487 other downstream 938641 38674441 ~ 38676029 (-) True LOC110496175
TU1769405 other downstream 1051352 38559649 ~ 38563318 (-) True LOC110496167
TU1769139 other downstream 1400621 38165250 ~ 38214049 (-) True G1546053
TU1770682 other upstream 8935 39625775 ~ 39631098 (-) True LOC110496208
TU1770674 other upstream 26015 39642855 ~ 39646533 (-) False LOC110496816
TU1770675 other upstream 26015 39642855 ~ 39648014 (-) False LOC110496816
TU1770684 other upstream 67947 39684787 ~ 39688681 (-) True LOC110496816
TU1771745 other upstream 769130 40385970 ~ 40391883 (-) True G1548367

Expression Profile