RNA id: TU1770674


Basic Information

Item Value
RNA id TU1770674
length 3150
RNA type TUCP
GC content 0.47
exon number 3
gene id LOC110496816
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39642841 ~ 39688750 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCTTTTCCTCTGtatcttcctcctccccctcttctgtATCATTCTcttgttcttcctcctcttctccttctccccttcagACCTGGACTCGTCTGCAGAGGACCCCAGCTCTCCCAGGAGGAAGGCTGCCGCTCGGAGCCGTCTCTCCAGCTGCAGCTCGGAGCCCAACACACCAAAGAGCGAGGTCAAGTGTGAGGGGGACATCTTCACCTTCGACAGAGCCGGTGCTGAGTCTGAGGATGTCCTGGGGGAGATGGACAAAGTGCCGTACTCCTCTCTCCGGAGGACTCTGGACCAGCGCAGGGCTCTCGTTATGCAGCTCTTCCAGGAACACGGCTTCTTCCCTTCAGCTCAGGCCACTGCAGCCTTCCAGGCACGATACTCAGACACCTTCCCCACCAAACTGTGTCTGCAGCTGAAGATCAGGGAGGTGAGGCAGAAGATCATGCAGACAGCCACACCTGGAACCCCCGGAATCTCTGAGCCCGGCGGGTCAACAACAGGGGTCATGGGTTCAACGGACTCCGCCTCGGCCGCCATCGGCTCCTCCAATACCAACACTCGAGATGGTACAGGGACAGAGCCAGGAGAAAGAGGGCGGAGTCCCGAGGAGCCCAGGAACGTGGGCAAATTGTAGAAAtggaaagaaggagagatggaaagaaggAGAAAAGTAAGAGAATAGAGAAGGTGGAGAGAAAGtgtcaaaagagagagaggagtgttgtTGTGTCCCACAGCATGTCCTTGTACATGTAGTAACAGGACATCAGTTTCACTTCGGCACAGTTCTGTACTGGCTGTACCCTCAGCACATTTGTAGTTTGACACAGAACATTCTGTGgtacacaccagtggaggctggtgggagaagcTATAGGAGAGGGGGATGGCTGGAATGgattcattgtaatggctggaatggaataaaaggAAAGGAGTCAAgcacgtggtttccatatgtttgataccgttccatttattccactcCAGCCCTTACAACGaaacgagcccgtcctcctatagctcccccccaccagcctccactggtacacacattcttactgtctctctctcgcgcacaCACACCCCACCAACTCAGACTGTTACTCTTGGGTGGCAGTCACGAGCACTGTCACACAGATGTACACAATGGCACTTTGTAACAATTTGTGCGGATTCAGTTTGCAGCCCTCTGTTGCCATTgacttccctccctccactcctcagCACAGTGGTTGGGATGTATCCAATGTAACATCCACTGATATTCCACAGCCCCTCTATGCTGCAACAACAGACAGCACTGAACtggacacacactgcacacacacagtctgccaGTCAACTCAACACTCGCCTGACCAAGCCTTTGGCCTGCACAGTTTTTAGAGATTGGAGAAAGTGAGTCAACCATTGGCTCCCGAAAAAGGGAGGCTGGACTCAGCGTGACCATTGACCAATCCCTGGCCCAATCAGTAATCAACGTCACAGACAGGCTGAGTTCCTATTGGCTGGAGAGGATGTTGTATATTGAGGTTTCCCCCCTTGTGGACGCCGTTATGAGATATGAAATATGTAAAGATTGAAGGGTGATGCGTGACAAAGCAACAAACTCAACATTGGTTGGCTGTAAACGAGCACAGAGAAAGGCTGAACGAGACAAATCGTCCATTCATTGGTCAACTCAAGAGGCTGCGGATTCCACCAAGGAAGCCGGAAGCAGATGATGTGACATGGCTCACTTGGCTCCCAAGTGACAGTTGACAAGCAAAAGTAGATTTATAACCAACGTCTAGGAGTCACCCAGTGGATATGTTGCTTTATCTTGTATTGTTGCAGTGGAAATAACACGTTTTTTCTGTGGCCTGTTTTCTCTCTTGTGGCTCTCATTGGTGTTTCTCCAGCGTAAACTTATATAAAAGGGGTTTGGAAACAGCCCACGCAACCCCTCTTCTAAATTTTACTTTGGGCCATTCCCCCTCTCCCATGACTGCTCAGTAGACACATAGTGGAGGGGGCAGGCAGTTTGTTTTTAAACGTTGAAATCAGGTGTTTGCACAATGTGTGGTCTTGTGACTGCAATTTAAATCAGGAAAGTATTATTTTTAGAGATTGTTTCTTAGAAATAACCTTGTTGTTCAATGTTATCAATCCCCCCCTTCTTCCATTTGGAGCCCCTTTCCCCCTTGCTTCCTTTCCCTGCCCCTCTAACCAAGTGTTGTTAGAAAGTGCCCTTAAGCACTGGTCCAGGGTCAGTTCTGTTACGTAGCTCAGGATGGCTCTGGTTAGAGTTTAGTTCAGGGAAAACAGATCCTAGACCAGCCCCGTAGGGCATTCTCTGgagccctctctcttccctctctgccaCTTTATTTTTTTCCTTATTAAATGGTGCAATAGGACATTTGGAATGGGTGGGTTATGTGGGTCTGTGCCATAGAtatttacagtacagtcagaAGACCCATTCTAACAACTATGGCATAAGAAGAACTCTCTGAGATTGCTATATTTGAAGAGATAGAGCATAGCTAACTAACTAAAGTCAAAGACATTCAAATAGCACTTTTTGCCTCTTCACTTGTTTTGGGAAGAGTTGGGGTAGTTATGGGTGTACCTTTATTTCTCTGTATACAGTTGGATGTGTGaaaaatatctatatttccatatgTGCATatagatgttgtgtgtgtgtttgcgcacaTGCATGTATGGACTCGGCCACACCCTTCACATACCATACAATAAGACATTATCAATCATATGTTCTTCACATATACTGGAGgcagtattttttttacagtcaCCAGGACTATTATATGCCACCTTGACTGTTATATTAATGAGATAGTCCAAGATCAAACGCATAGAATTTATCAAAGATTTGTTGAGTCTTGCAAAGGTGAGGCCTGAAATGATTCCGTGAACATGCATgtgcgcacgcaaacacacagacagacatacacacacacacacacacacacgaatgcgTGTACACTGTATGATTGTGCTTAAAATAAACTGTCCATACCTTGGAGAAGGAATTTTAGAATGAGAGAGATGAGTGTGAGCTCATAAACAGGCATGTTGACCATGTGCAATATTTCTAAGCAAAATAAACAACTAAATATTGAAAATATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1770706 lncRNA downstream 31308 39609934 ~ 39611547 (-) False G1547454
TU1770708 lncRNA downstream 31308 39610384 ~ 39611547 (-) True G1547454
TU1770705 lncRNA downstream 32569 39609934 ~ 39610286 (-) False G1547454
TU1770693 lncRNA downstream 48108 39594308 ~ 39594747 (-) True G1547442
TU1770692 lncRNA downstream 50151 39592392 ~ 39592704 (-) True G1547441
TU1770733 lncRNA upstream 32071 39678604 ~ 39679129 (-) True G1547474
TU1770762 lncRNA upstream 90258 39736791 ~ 39736990 (-) True G1547501
TU1770771 lncRNA upstream 103786 39750319 ~ 39750552 (-) True G1547510
TU1770799 lncRNA upstream 160486 39807019 ~ 39807225 (-) True G1547537
TU1770812 lncRNA upstream 190988 39837521 ~ 39837785 (-) True G1547550
XM_021571978.2 mRNA downstream 1052 39625771 ~ 39641803 (-) False LOC110496208
XM_021571977.2 mRNA downstream 1054 39625771 ~ 39641801 (-) False LOC110496208
XM_036952762.1 mRNA downstream 26015 39614670 ~ 39616840 (-) True LOC110496207
XM_036952761.1 mRNA downstream 26019 39614670 ~ 39616836 (-) False LOC110496207
XM_036952759.1 mRNA downstream 26020 39614670 ~ 39616835 (-) False LOC110496207
XM_021571979.2 mRNA upstream 51091 39697624 ~ 39723536 (-) True LOC110496209
XM_036952770.1 mRNA upstream 109006 39755539 ~ 39774142 (-) False LOC110496210
XM_036952769.1 mRNA upstream 109006 39755539 ~ 39790461 (-) False LOC110496210
XM_021571981.2 mRNA upstream 109006 39755539 ~ 39825088 (-) False LOC110496210
XM_036952768.1 mRNA upstream 109006 39755539 ~ 39825088 (-) True LOC110496210
TU1770682 other downstream 11757 39625775 ~ 39631098 (-) True LOC110496208
TU1769526 other downstream 855054 38776284 ~ 38787801 (-) True G1546396
TU1769511 other downstream 869171 38768097 ~ 38773684 (-) True G1546385
TU1769487 other downstream 966826 38674441 ~ 38676029 (-) True LOC110496175
TU1769405 other downstream 1079537 38559649 ~ 38563318 (-) True LOC110496167
TU1770684 other upstream 38254 39684787 ~ 39688681 (-) True LOC110496816
TU1771745 other upstream 739437 40385970 ~ 40391883 (-) True G1548367
TU1771911 other upstream 993642 40640175 ~ 40685641 (-) True G1548517
TU1772024 other upstream 1259154 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 2016903 41663436 ~ 41671514 (-) False LOC110496277

Expression Profile