RNA id: XM_036952771.1


Basic Information

Item Value
RNA id XM_036952771.1
length 4214
RNA type mRNA
GC content 0.51
exon number 7
gene id pvrl2l
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39933644 ~ 40019541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTCAGAATGCGTGCGAATGCTTAGTGGAGATAACCGACACACAGAACATGAGTGTTACTTTTTTCTGGTGCCATTTAGCGAACACCAGAGACATACCTGTACGCACTACGTCCGCCCCAGACGGGGAGGGGTTTTGAATGTTTTTGTGTGACTGTCAAGTCGACTCTAATTTGAAATCGAGAAAATAAGACGTCGGACTGAAGATCAAACCTATAGTTTACGGACTCCGGTCTGTTTTGCGGTCTAGTTCCTATTATATATTTGTATTGAGAAGCAATCAGTCAAGGAATATTAAGTCTGTTGTGGTGTGGTGCTGGGGATTTTATATCCACCTCGTCTTTTTAGAAGAATGGCGAGAGACGCTAAACATTGCCCCCTATCACCAATGAAAAACAGTTTGTTGGTGACAGCAGGGATACTTCTGATTATTCAAGcTGCTTCGTGTCAGCGGGTGAGGGTGGTACCAGAGGTGGAGGCGTACCCCACCGAGTCGGTCGACCTGCGCTGTCAGTTTGTCGACGGAGGAAACACCAAGCTCACACAGGTGTCGTGGATATGGGAGCCCACGGAGGGCCAGAGGGACAACATTGCCGTCTTTCACCCCATATACGGCGAGAGCTTCCCCGAATCGCCCTTCAACGGGCGTGTCCGCTTCATCCAAGGCACCTTGACAAACCCCTCCATTACCATCAGCAGCCTCAAGATGGCCGACGCCGGGCGTTACACCTGCGAGTACGCCACTTACCCCAGCGGCAATGAGCAAGGCACCACCAATCTGGTCATACTTGCGAAACCCAAGAATTCTGCATCCCCCGTTGTCGTCCAAGCCAGCACAAGCGGCAAACCAGTGGTCGTGGCCCAGTGTGAGGCGGCTGACGGCAAGCCAGCAGCCAGCATCAAGTGGATGGGAGAAGTCGGTGGCACCGATAACACCACCTCCAAAAAAGGTCTGGACGGCACGGTGACGGTGAGGAGCGTGTACCTACTGGTGCCCACGCCTGAGGACAACGGCAAGGAGGTCACCTGCATGATCAGCCAGCGCACTCAGGACAAGCCGCAGACCTTCCCCATGAAGCTGTCTGTCGAGTATCCCCCGACTGTGTCCATAGTGGGCTATGATAACAACTGGTACATTGGCCGGACCGACGCTGTCCTGACCTGCCAGGCCACGGGCAACCCTGCCCCCGCCAACGTCACTTGGACAGCcatgtccGGTCGGATGCCTGACACGGTACAGATCGCCGACAACAAGCTGATCGTGCGGAAGGTGGACGAGGCTGTGAACACCACCTTTGTCTGCGAGGTGAAGAACCGGCTGGGAGTGAGCAAGCACCAGGTCACCACGGTGGTCATCGAGGCCATAGTGGACCCGTCCAACGCGGGCGTGGTGGCGGGGGCTATCATCGGCAGCCTGCTGGCCCTACTGCTGGTCAGCTCGCTGATTGCTGTGCTGGTGACCCGCAGTCGCCGGCAACGGCGCGGTTACCCCGGCAACGGAGAGCCTGGCGCCTACGGGAACAAAGCCCGCCTCTTCGGCGGAGCTGGCAACAAGAACGAAGGCACGGGGGCCAACATCAACGGGCCCATCTATACGTACCGCGAGAGTGACCCCGGAGCGCTGGCGGAGAATGTCAACGACTTCCACGGCCCGCCAGGCTCCACTCCCACCGCCCACGACATCCTGCTGAGCAGCGAGATGGACGAGGCGGAGCGCAGGAAATTTGACGCCCTCGACGACAgcctggaggaggaagaggagcgcTACGACAGCTTTAGCGTGGGCATGGTTCCAGCCTATCACATCCACCGGCACAACGAAGAGATGGGAGGGGTCAGCATGTACCTCGACGACGACATGGAGTCACAGCGGGATGGGTCGGTCATCTCCCGGACTGCCATCTACGTCTAGAGAGGGGCGGTCAACCAACAGGGTCCAGGAGGGAGAGCTGAGGACAGGGTGGAGAGTCCACCAACAACCACCCATCCCCCTGCATACTAAATAGACATGCTACGCTTATGGTAATTTTACACAAAAAAATAACTACAGAAACAAAAGGTGTTGAAACTGAACTGTAACTGAGGAACAAGCGGAATGATGACTTGAGTGCGCTGGTCAATGACTCGGCATCTCGATAAGTCAGTCAGTCTACCAAAATAAATTGTAACAATGTAACTCATCTTCAATGCTGCTTACTGCTCCATTTCATCTTAGCAAGTGAAACGTGAAGAGTGACCATGTGACTGCGTTTAGTAGCCCACTAATCCACAGGACTGCAAACACTAAAGACTTTTTCTCGTTAAGGACACGTACCGTTCAATGTCGCCTTCATGGTACAACTTTTAGACGCATTCCTAGACGGTCACACTCGTTCTATAACCACGGCTACTGCTCGAAGACGTCCTCCAGCGGACCGCCGTGCGGAGGACGAGGAACCGAGCTGTAACTTGTTGTCTTCGTGTGCATCATCACAGGCGTTCCATAGCACAGTGTTACGTACAAATTGTATTTTGTATTATCAAGATGTTTGGGCCTTCAGGCCTTGTTGAAACCACATTTGGTGTTAATGACTCATATATAATGACTTAGGTAGAGTTTCCTACTTCCAtttccttctttcttttttttctctcttcattATTTTCTTTTACATATGGGAGGCCAGCGACGTGGTAGACCGAGCTGGAGCTGGGGTTTGGATGAGAGAAATAGTGCGACCAGATCTGTTTGTTTTTCCAACTGTCTGTTGGCGGTTCATGTTGGTGGAACGTCACTGCTGGAGCGAAGGGCAGCGGGGTCAGCTGGCACCATCCCAGGGTATTGGGCCCAGTGCCAGGCTGTACTGGCCTTCCACGCTGAGGGACCAGCCAGCTCCTGTAATGATCGGAGCCACGTCTAGTCTGCCTAGCGATAGCATAAGACAGATCGACATGCACACCCAGCTCTAACTGAACCTCTTGCTCTGCCTGTCAGTTTGACCAATTAAAAAACAAAAAGGAAGCGGACTCCATTTCCCCGGCAAGTCAATAAACGCGCCGTCTATTTAATGGTAAAGAAATGTTTCGCCGCTGATGCTCGAGGGACCGGAGGCGGAATATTTCcctcgttttttattttttttataccagAACAAACTGTTCCTAGCCCACATGTTTAATTCAGGAGTAGAAGAAGCATAAAAGTGTTGCGCATTATCTTATGTAGAGGTATAGAGCGAGAGAGGCTGATTTCTGGCTGGTATTGAGCGCTTttgcgattttttttttttaatgcagatAAGCCCAAGCATTAATAATAAGACAAGCCGCACATACGGCTGAAATTGCGAAGCTTCACTCCCGAACACAGTAGGAGTTATGAAGTGTTATGAGGTCGACCGTCAACGATCGATTAATCTACTTCAAAATACAGTATTATCATTATTTTAGCGGGGCGAAATGCTGAGTCGAGTTGTTTTTTTGCTGTATGTTAATGGGCAAATCTCTGCCGGGCCTTCTAAAGGGGGGCAGTAAACACACAAAATACGCCTGTGACTGTGTGTGGGGATATTTCTGACCATGTGCGAGGCCCATTAGTTCTAAGCCTGGCTGGCATATGTGTTTTTCGAGTTCTGAGTTGACCGAATTTGAATCGCTGCCAGACTTGGAACGAGGTTAAGGGGCTAACCCCACCCGCAGTATGTTCCACTGTCAGATTGCCGCAGTTCACTTTAACGTAGtggcctagtgtgtgtgtgtgtgtgtgtgtgtattgtgcaaGGGTGTATGTAGCGTGATTGTACAGATTTGAGTTGTGTATATCCCACATGCTGATTCATCGCGCAATAGCCCAATGTTATGCAGGAGGAGTTTTGCATAATGTCATACATATGGATGGCTAAGCCTATCTCTGAGTCATTCATCAGTCATTTCATGCACAGTAACCTCACTGATGAAGGGGTTGGAGGACCGTGATAGGAAACTGCTTAGCACGGGGACCCGCGTGGACATGAATATTACACTGGCGGAGCCGGGATGAAGCCGGACTGGCTCAAAGGGCCTTTGGAGTGGTCTCCTGTGCCACCCCGGCCAGATGGAAACTTGATTGGGTATTGGCGTCCGGGCCGTTGCTCTGTAAATATTGTGACCCATTCCCCCTCCTTTGCTTTTTCTTATCACAgatagaggtcgactgattatgatttttcaacggcgataccaaattattggaggacc

Function

GO: NA

KEGG:

id description
K06539 PVR, NECL5, CD155; poliovirus receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1770872 lncRNA downstream 49242 39924639 ~ 39924993 (-) True G1547609
TU1770823 lncRNA downstream 116372 39857659 ~ 39857863 (-) True G1547561
TU1770820 lncRNA downstream 117914 39856095 ~ 39856321 (-) True G1547558
TU1770812 lncRNA downstream 136450 39837521 ~ 39837785 (-) True G1547550
TU1770799 lncRNA downstream 167010 39807019 ~ 39807225 (-) True G1547537
TU1771613 lncRNA upstream 2247 40021788 ~ 40021998 (-) True G1548257
TU1771616 lncRNA upstream 5695 40025236 ~ 40025442 (-) True G1548260
TU1771621 lncRNA upstream 10443 40029984 ~ 40030503 (-) True LOC110496213
TU1771634 lncRNA upstream 33834 40053375 ~ 40053601 (-) True G1548270
TU1771691 lncRNA upstream 135297 40154838 ~ 40169209 (-) True G1548317
XM_021571982.2 mRNA downstream 76899 39864987 ~ 39897336 (-) True atp1a3a
XM_021571981.2 mRNA downstream 149147 39755539 ~ 39825088 (-) False LOC110496210
XM_036952768.1 mRNA downstream 149147 39755539 ~ 39825088 (-) True LOC110496210
XM_036952769.1 mRNA downstream 183774 39755539 ~ 39790461 (-) False LOC110496210
XM_036952770.1 mRNA downstream 200093 39755539 ~ 39774142 (-) False LOC110496210
XM_036952773.1 mRNA upstream 10109 40029650 ~ 40034564 (-) False LOC110496213
XM_021571986.2 mRNA upstream 19002 40038543 ~ 40048166 (-) False LOC110496214
XM_021571985.2 mRNA upstream 19002 40038543 ~ 40048437 (-) True LOC110496214
XM_021571987.2 mRNA upstream 36853 40056394 ~ 40063549 (-) True LOC110496215
XM_036952774.1 mRNA upstream 60674 40080215 ~ 40093771 (-) False LOC110496218
TU1770684 other downstream 285554 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 326221 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 327702 39642855 ~ 39646533 (-) False LOC110496816
TU1770682 other downstream 343137 39625775 ~ 39631098 (-) True LOC110496208
TU1769526 other downstream 1186434 38776284 ~ 38787801 (-) True G1546396
TU1771745 other upstream 366429 40385970 ~ 40391883 (-) True G1548367
TU1771911 other upstream 620634 40640175 ~ 40685641 (-) True G1548517
TU1772024 other upstream 886146 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 1643895 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 1648719 41668260 ~ 41671514 (-) True LOC110496277

Expression Profile