RNA id: XM_036952773.1


Basic Information

Item Value
RNA id XM_036952773.1
length 3363
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC110496213
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40029650 ~ 40034564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCACAGCTGTGAGTGACAGAGCAGAGGCGGGCGGAAATGGCGTGATTCAAGCGCAAGGAAGCCTGGATGGCGCGCCAAATTTCAAAGGACTTCCTGGGGGAAAAGAACGCGAAAATCTCCGTTCAGCAAACAACGACGTTTAAATTGGACATAAATTATCAAAAGACTAAAGTATATAGACCGTTTGAAACAATCGGCGGCAGCAGCATCATATTTAGACAGTGGATAAGAGTTCAAGTGCGCCAGATTCGAGCCACTTTTGTGGAGctatgggcaactttgatgggggccacaatctgaactcatcatgagaggCCACAGTGATCAGGGCCTGGCCGTAGCCTTTCTGCAATTCTGACTTACATCAtaagagaaactgctgatgcacaaccacatttcgaaTTGCGTTGGTGTCTTCTAACTCTCAACGATTGAACCACCTCAAGCTGCCAGCACTAGCTCCCAGCCTTTTACGTGTCAATTTCTGAGTTACTTAGCTTAGTCAAATGTACACGGCCTTACAACTGATATTTCGGTGACATTACTCAGCAAATAACCGTGCAGGTTATAGATTGTATACGATATGTTTGACTGTTAAAACGAGAGTTTTAATGTTTAATCTGTTAAAATTCATTCAACACCACATACAAACAACCAAGCTTTTACCAGCATTAcagacagatgtttttgttaTCACATTCACTGACTTAAGTGCTATTTAAGCAATGGAAAGCTCTATGTAAGAAAGTAGCTGTTACTGACTGGGGTGGGGATCAGTTAGTCGCGGCCATGCTGTCCGGCGTCCAGCCGTGTTTCCAGCTGCTGAGAATCGGCTCGTCCTCTACGGATTCAGCCCGGGACCTGTACACGTTCCGGCCTGCGCTGACCCACTCCGTGTTCCGGCTGGGCCGTGAGGCAGAGCTGTGTGACGTCACACTGGACTCGACGTCTGTGTCTCGGATCCACGCCGAGCTGCATGCTGAGAGGGAAGCGGAGGGAGCAGCCGAGGGGGGCTGGAAGGTGCAGATAAAGGATCGGAGCAGCCATAGTACCTGGGTGAATGAGGTCCGGCTGCAGCCAGGTGTCCAATGGGAGCTCTCAGATGGTGACACGCTCACCTTCGGAGGCCAATCAGAGAGAGGAAGCCCAGAGTTCTACTTCCTCTTCCAGAAGGTTAGCGTGCGGCCGTTGGACTTCGACGCCATCACCATCCCAAAGGCCGGCACCTTCTCCTCCGACCTGAAGAACCGAATCAGAACGAGCCTGGACCGCAAGGCGGTGGCCAACTTGGATATCAACAGGGCGACCGTCATTCTGAATTCCATCGGAAGCCTGAGCAAGATGACTGGGACTCCTTGGACGTTTAAGAGGAGGTGTGACGGCAATATCACAGACGCAAGCTCCACCTTCTTTCCTTTTACATCCTTGGTCccgccctccacccctcctccctttccACCCACTACCTCTGTGGTCTCATCCAAGTCACTCCCGCCCTCATCCAAGAGCAGGCGCAAGTCAGCCCACACTGTCCTTCTGGAGGATGACAGCTCGGACGAGCCCGGGAACCACCGAAGAGTGAAAGACGGACCGAGTGGGACGAAGAGAAGGCGCCTCTACAAGTCAGAATCTGAGGGTTTCCACGCTCATTTACCCAAAACGGACCAGGATGTACGACGCCAGTTTGAACTGAAACACGTGCCTGTGCCCAAACCGGTCGCAAACTGTCACACCATCGTCGCTAACGGCAAACTCAACCATGTTTCCTTCAACATCAGTCAGAGGCGGGAGATTGACCCAAACAATCAAAGAACTGGCCCAAACGTCTCTGTGTTTCGCCAGCAGCATATTTTTCCGCCGCCATCCTCTGGGCGGGGAAGGCAACGGGCTCACAGCGCCCCAGTTTACTCCCCTGTGGTGGTGGGAGGAAAGACTTACACCCTGGGGTCTCCATCCTTGAGGATCTGCAAAGAGGATGGAGAACGGGCAGGGCAGTTTGCCAGATTTCACATCACCTCTGGcaaGCTGCGGGGCAGACCAAGGAAGCACCCTCCTCCGCggccctcccttccccctcctttgtcttcctcctcctcgtcgtCATCCTCTTCGAGCTCGTCGTCGTCGTCCTCAGAAGACGAGGTGGAGGGAGTGTCCCAGGGGGTGGAGCCATGTGCCGCACCTCGCTGCAGCCTGCCCCAGCAGGACACGGTGCAGTGGGTCCAGTGTGACGACTGCGACGCCTGGTACCACCTGGACTGCCTGCACCGCGACCGCAAGAACCTCCTGCTGGACCCCAACGCAGACTTCCACTGTGGCTGCCGCTGATACAGCAGGAGTGGGTCACAGACCCCTACACCAGAGTACACTTAATGTCTTAATCATACCACAATGAATTATGGGGGGGGGGAGAAATACACGTTATTCTTGTATAATGGGGATTATATGATCAAAATAGATGTTGTACAGTGTTTgtggaggtaaaaaaaaaaaaaaaaaagttgcgaCTGAGGctcttatgaacagtaggatgggtCTCGTACCTAATGGTTAGAGGCTGCCCTTAACTGACATGTTTCAAAGTGCTCATCTAAGCTCGCTCTGACGCTGAGCAACGGTTTGAGGAATTACAATGAAAGCTTGTACTTGGGTTAGCGCTGGTAACCCCGGGGACTGATATGAACTGAACTATTTTAGCCGCACACAGGCTACTCTGGTGAACAGTACAAGTCTCGAAACGAGTTGGCTGACAGTGACGGGCTGCAGATTTTCTAACTTCCTGTACGAAGCACTTTCATATTGGGTTGTGAGTAAACCCTGCTGTTGATGGGGCTAAATGAAGGTGGTATTGGGAGAATTCGCCAAATTCTTATCTGCCGTAACACAATGTGCATCGCAATGCTCTCATCGCACAAGGCGATCTGCTTGAGCTTGATTCTATCCGGTGCGGTAAAGATGTCCACTCAAAAAAAGATGAGCGTGGGTTTTCTGCTTTCATTCTCTGTTGTGTTGATGCCGACTTTATTTTGTTCTTCTGTCTGACGACTTCGATTCATATATCTAACGATGTATCCGTATCGGTCCAAAACACGACGAGATTTCAGCTGTGGAGCAGGGACTGCTTGTTCCCGCCCTACTATAGCTCACCAGTTGCTCCTTCCGGATCTTGATTGGCTGACGTAGGACGGCTGGAGTAAAAGCCGGCTCTCCAGGAAGGAGGGTTTGCCACACCTGATGTATGGTCACAAAAGACTTCACGCCGTCTTCACTTTCACGCCGTCTTCACGCTCGCGGGAGAGCGTTACAGTTTGGATGTTTTCTCAACGTTATtagggaaaaaaataaaatctatttaaaaaTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1771616 lncRNA downstream 4208 40025236 ~ 40025442 (-) True G1548260
TU1771613 lncRNA downstream 7652 40021788 ~ 40021998 (-) True G1548257
TU1770872 lncRNA downstream 104657 39924639 ~ 39924993 (-) True G1547609
TU1770823 lncRNA downstream 171787 39857659 ~ 39857863 (-) True G1547561
TU1770820 lncRNA downstream 173329 39856095 ~ 39856321 (-) True G1547558
TU1771634 lncRNA upstream 18811 40053375 ~ 40053601 (-) True G1548270
TU1771691 lncRNA upstream 120274 40154838 ~ 40169209 (-) True G1548317
TU1771698 lncRNA upstream 136295 40170859 ~ 40182138 (-) True G1548323
TU1771700 lncRNA upstream 136925 40171489 ~ 40172837 (-) True G1548324
TU1771709 lncRNA upstream 172075 40206639 ~ 40207042 (-) True G1548331
XM_036952771.1 mRNA downstream 10109 39974235 ~ 40019541 (-) True pvrl2l
XM_036952772.1 mRNA downstream 10110 39933644 ~ 40019540 (-) False pvrl2l
XM_021571982.2 mRNA downstream 132314 39864987 ~ 39897336 (-) True atp1a3a
XM_021571981.2 mRNA downstream 204562 39755539 ~ 39825088 (-) False LOC110496210
XM_036952768.1 mRNA downstream 204562 39755539 ~ 39825088 (-) True LOC110496210
XM_021571986.2 mRNA upstream 3979 40038543 ~ 40048166 (-) False LOC110496214
XM_021571985.2 mRNA upstream 3979 40038543 ~ 40048437 (-) True LOC110496214
XM_021571987.2 mRNA upstream 21830 40056394 ~ 40063549 (-) True LOC110496215
XM_036952774.1 mRNA upstream 45651 40080215 ~ 40093771 (-) False LOC110496218
XM_021571989.2 mRNA upstream 45651 40080215 ~ 40093772 (-) False LOC110496218
TU1770684 other downstream 340969 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 381636 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 383117 39642855 ~ 39646533 (-) False LOC110496816
TU1770682 other downstream 398552 39625775 ~ 39631098 (-) True LOC110496208
TU1769526 other downstream 1241849 38776284 ~ 38787801 (-) True G1546396
TU1771745 other upstream 351406 40385970 ~ 40391883 (-) True G1548367
TU1771911 other upstream 605611 40640175 ~ 40685641 (-) True G1548517
TU1772024 other upstream 871123 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 1628872 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 1633696 41668260 ~ 41671514 (-) True LOC110496277

Expression Profile