RNA id: XM_021571988.2


Basic Information

Item Value
RNA id XM_021571988.2
length 1752
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC110496217
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40065260 ~ 40077268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGCTTTTGACGGGAAGAGCTATAACGGGACAGAAGCTTCATATATACATACTGGCATTGGACAGACGACAGCAAGAATAACACTGCTGTATTTTGAGAGCCAAAAACAGTATTGTTGCAACGCATCTATACATTTGCATTCTGCATTAGTTCATTCTGTCAAATTGCATCTGAGGAAGAAAAACATGTTCTACACGTGTGGTCCAAATGAGGCTATGGTGGTGTCAGgGTGCCTCCGTTCTCCTCCAGTAATGATTGCTGGAGGCAGAGTGTTTGTGCTTCCCTGTTTTCAGAAGATCCAGAGGATCTCCCTGAACATTCTGACGCTGAGCGTGAAGAGTGAGAAAGTCTACACCCGACGTGGGGTTCCCATCTCGGTCACTGGTATTGCCCAGATGAAGATCCAGGGGCAGAACAAGGAGATGCTGGCCGCAGCCTGTCAGATGTTCATGGGGAAGTCAGAGGGCGAGATCGCCCAAATCGCCCTGGAGACGCTGGAGGGCCACCAGAGGGCCATCATCGCCCACCTGACTGTGGAGGAGATCTACAGGGACCGTAAGAAGTTCTCAGAGGAGGTGTTCAAGGTGGCCTCGTCCGACCTGTTCAACATGGGCATCAGCGTGGTCAGCTACACGCTCAAAGACGTTCACGACGACCAGGACTACCTCCACTCCCTGGGGAAGTCCAGGACCGCCCAGGTGCAGAAAGACGCCCGCATCGGAGAGGCCCAGTTCAAGCGGGATGCTGTGATCAGGgagGCCCATGCCAAGCAGGAGAAGATCTCAGCCCAGCACGTCAATGAGATCCAGATGGCCATGGCTCAGAGGGACTATGAGCTGAAGAAAGCATCCTACGACATCGAGGTCAACACCAAGAAGGCAGAGTCTGAGATGGCCTACCAGCTACAGGTGGCCAAGACCAAGCAGCTCATCGAGGAGGAGAAGATGCAGGTCCAGGTGGTGGAGCGCTCTCAGCAGATCATGCTCCAGCAGCAGGAGATCACCCGCAAGGAGAAGGAGCTGGAGGCCAAGGTTAAGAAGCCTGCTGAGGCCACGAGATACCAAATCGAGAAGCTGGCCGAGGCCCAGCGTGCACAGCTCATTAtggaggctgaggctgaggcagAGTCCATTAGGaTTAAGGGTGATGCGGAGGCCTTTGCTGTGGAGGCGAAGGGGAGAGCCGAGGCGGAGCAGATGGCCAAGAAGGCCGAAGCCTTCCAGCAGTACAAGGAGGGAGCCATGGTGGACATGCTGCTGGAGCAACTACCACTAATGGCGGAAGAGATCAGCAGGCCTCTGGCGCAGGCTCAGAAGATCACCATGATTTCCAGCGGGGGTACCGAGGTGGGCGCGGCCAAGCTCACAGGAGAGGTGCTAGACATCATGACCCGCCTTCCGGCGACGGTGGAGAAACTGACGGGAGTCAACATCTCACAGGTGACAACTCATACGGTCTGAGGACTCCGGTGCTCAGGCAAACCTATTTCACAACCCTGCCTACTACCACAGCCTTTAACTCTCTCCTCAAGTATGTTATGCCAAAAAAAACATATGGTGCCCTACGTAATTATTGGGACCGTGAAGCATTTTTATCTTCTTTTGGCTCTATTCTCCAAaagtttggatttgaaatcaaacaatgactGAGGTTAACGTGCAGACTGTCagattttcatccatatcgggtgaaccgtttagaaattgcATATtgcattttggagtcacttttattgtagataagaatataata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1770962 lncRNA upstream 10834 40054197 ~ 40054426 (+) True G1547682
TU1770851 lncRNA upstream 158505 39903628 ~ 39906755 (+) True G1547588
TU1770850 lncRNA upstream 159004 39903222 ~ 39906256 (+) True G1547587
TU1770635 lncRNA upstream 193795 39868857 ~ 39871465 (+) True G1547400
TU1770616 lncRNA upstream 227487 39837449 ~ 39837773 (+) True G1547384
TU1770992 lncRNA downstream 8689 40085957 ~ 40088021 (+) True G1547711
TU1770979 lncRNA downstream 53278 40130546 ~ 40142406 (+) True LOC110496223
TU1771034 lncRNA downstream 124641 40201909 ~ 40202458 (+) True G1547743
TU1771036 lncRNA downstream 126612 40203880 ~ 40204439 (+) True G1547745
TU1771038 lncRNA downstream 128172 40205440 ~ 40205726 (+) True G1547747
XM_036952764.1 mRNA upstream 443075 39619719 ~ 39622185 (+) False LOC118941156
XM_036952763.1 mRNA upstream 443075 39619727 ~ 39622185 (+) True LOC118941156
XM_036951045.1 mRNA upstream 478398 39585870 ~ 39586862 (+) True LOC118940977
XM_021571960.2 mRNA upstream 708136 39326837 ~ 39357124 (+) False LOC110496201
XM_036952776.1 mRNA downstream 18560 40095828 ~ 40101459 (+) False kifc1
XM_036952777.1 mRNA downstream 18560 40095828 ~ 40101459 (+) False kifc1
XM_036952778.1 mRNA downstream 19078 40096346 ~ 40101459 (+) True kifc1
XM_021571996.2 mRNA downstream 26463 40103731 ~ 40110006 (+) False LOC110496221
XM_021571995.2 mRNA downstream 26464 40103732 ~ 40110006 (+) False LOC110496221
TU1770924 other upstream 24666 40035517 ~ 40040594 (+) True G1547652
TU1770566 other upstream 303757 39761213 ~ 39761503 (+) True G1547334
TU1770013 other upstream 595895 39467454 ~ 39469365 (+) True G1546817
TU1769903 other upstream 692779 39358411 ~ 39372481 (+) False G1546713
TU1769824 other upstream 919008 39133119 ~ 39146252 (+) True G1546641
TU1771006 other downstream 28727 40105995 ~ 40106776 (+) False LOC110496221
TU1771007 other downstream 29010 40106278 ~ 40106846 (+) True LOC110496221
TU1771032 other downstream 124641 40201909 ~ 40202458 (+) False G1547743
TU1771080 other downstream 249207 40326475 ~ 40327181 (+) True G1547788
TU1771113 other downstream 349840 40427108 ~ 40429520 (+) True G1547817

Expression Profile